View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0720_low_10 (Length: 254)
Name: NF0720_low_10
Description: NF0720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0720_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 3384871 - 3385102
Alignment:
| Q |
1 |
cgtcattcgtggttttcttagaattaagtatttatcttcattcatatcatatgaaccta--------aacatagcaaaatttaatcaataaactttaact |
92 |
Q |
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| T |
3384871 |
cgtcattcgtggttttcttagaattaagtatttatcttcattcatatcatatgaacctagaaaattaaacatagcaaaatttaatcaataaactttaact |
3384970 |
T |
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| Q |
93 |
aacactaacaaagaatggaaatcagtagcaaactaacaaacaataaacttttattcatttgaaaagnnnnnnnnncctttattcattcaaatggctagga |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3384971 |
aacactaacaaagaatggaaatcagtagcaaactaacaaacaataaacttttattcatttgaaaa---aaaaaaacctttattcattcaaatggctagga |
3385067 |
T |
|
| Q |
193 |
aataaacaaagtttgttcataaaatatacacaact |
227 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
3385068 |
aataaacaaagtttgttcataaaatatacacaact |
3385102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 1489796 - 1489910
Alignment:
| Q |
109 |
ggaaatcagtagcaaactaacaaacaataaacttttattcatttgaaaagnnnnnnnnncctttattcattcaaatggctaggaaataaacaaagtttgt |
208 |
Q |
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|||||| |||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
1489796 |
ggaaattagtagcaaactagcgaacaataaacttttattcatttgaaaa---aaaaaaacctttattcattcaaaaagctaggaaataaacaaagtttgt |
1489892 |
T |
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| Q |
209 |
tcataaaatatacacaac |
226 |
Q |
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|||||||||||||||||| |
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| T |
1489893 |
tcataaaatatacacaac |
1489910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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