View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0720_low_3 (Length: 334)

Name: NF0720_low_3
Description: NF0720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0720_low_3
NF0720_low_3
[»] chr7 (11 HSPs)
chr7 (60-244)||(22896784-22896968)
chr7 (60-244)||(22879152-22879336)
chr7 (60-244)||(22892468-22892652)
chr7 (60-244)||(22813542-22813726)
chr7 (150-244)||(22808225-22808319)
chr7 (139-244)||(22887892-22887997)
chr7 (139-243)||(22874522-22874626)
chr7 (139-244)||(22803930-22804035)
chr7 (139-244)||(22870428-22870533)
chr7 (139-243)||(22838646-22838750)
chr7 (139-244)||(22829625-22829730)
[»] chr1 (1 HSPs)
chr1 (169-243)||(21152016-21152090)


Alignment Details
Target: chr7 (Bit Score: 161; Significance: 8e-86; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 60 - 244
Target Start/End: Original strand, 22896784 - 22896968
Alignment:
Q  60 cagagagaagtgaatcagcaatagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcaaaaaattcttggta 159  Q
    ||||||||||||||||||||||||||||||| || || |||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22896784 cagagagaagtgaatcagcaatagacacagaggtgtgtgacattgtgttgcccatagaagaaggataagacaaaggaaagtcctcaaaaaattcttggta 22896883  T
Q  160 cccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggtaaaggtatatccctttccaaatactgtacaacttgt 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22896884 cccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggtaaaggtatatccctttccaaatactgtacaacttgt 22896968  T

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Target: chr7; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 60 - 244
Target Start/End: Original strand, 22879152 - 22879336
Alignment:
Q  60 cagagagaagtgaatcagcaatagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcaaaaaattcttggta 159  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||     
T  22879152 cagagagaagtgaatcagcaagagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcaaaaaaatatttgtt 22879251  T
Q  160 cccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggtaaaggtatatccctttccaaatactgtacaacttgt 244  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  22879252 cccaaaagttaatccagaagaagataaactaggcaaagacaaatctggcaaaggtatatccctctccaaatactgcacaacttgt 22879336  T

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Target: chr7; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 60 - 244
Target Start/End: Original strand, 22892468 - 22892652
Alignment:
Q  60 cagagagaagtgaatcagcaatagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcaaaaaattcttggta 159  Q
    ||||||||| ||| || |||||||||||||| || || |||||| | ||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22892468 cagagagaattgagtcggcaatagacacagaagtctgtgacattgtgttgcccatagaggaaggataagacaaaggaaagtcctcaaaaaattcttggta 22892567  T
Q  160 cccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggtaaaggtatatccctttccaaatactgtacaacttgt 244  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  22892568 cccaaaagttaatccagaagaagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatactgcacaacttgt 22892652  T

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Target: chr7; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 60 - 244
Target Start/End: Original strand, 22813542 - 22813726
Alignment:
Q  60 cagagagaagtgaatcagcaatagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcaaaaaattcttggta 159  Q
    |||||||||||||||||| |||||| ||||| ||||| |||||| |||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||    
T  22813542 cagagagaagtgaatcagaaatagaaacagaagtatgtgacattgtcttgtccatggaagaaggatacgacaaaggaaagtcctcaaaatattcttggta 22813641  T
Q  160 cccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggtaaaggtatatccctttccaaatactgtacaacttgt 244  Q
    |||||||||||| ||||||||||||||||||||| ||| ||||||||| |||||||||||||  ||||||||||| |||||||||    
T  22813642 cccaaaagttaatccagaagaagataaactaagcgaaggcaaatctggcaaaggtatatcccgctccaaatactgcacaacttgt 22813726  T

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Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 150 - 244
Target Start/End: Original strand, 22808225 - 22808319
Alignment:
Q  150 attcttggtacccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggtaaaggtatatccctttccaaatactgtacaacttgt 244  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||| ||||||||||| |||||||||    
T  22808225 attcttggtacccaaaagttaaaccagaagaagataaactaagcgaagacaaatctggcaaagctatatccctctccaaatactgcacaacttgt 22808319  T

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Target: chr7; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 22887892 - 22887997
Alignment:
Q  139 gtcctcaaaaaattcttggtacccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggtaaaggtatatccctttccaaatactgtaca 238  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||||| |||||||||||||||    
T  22887892 gtcctcaacaaataattggtacccaaaagttaaaccagaagaagataaactaagcgaagaaaaatctggcaaaggtgtatccctctccaaatactgtaca 22887991  T
Q  239 acttgt 244  Q
    ||||||    
T  22887992 acttgt 22887997  T

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Target: chr7; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 22874522 - 22874626
Alignment:
Q  139 gtcctcaaaaaattcttggtacccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggtaaaggtatatccctttccaaatactgtaca 238  Q
    |||||||| | |||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| |||||||||||||| ||||||||||| |||    
T  22874522 gtcctcaacacattcttggtacccaaaagttaaaccaaaagaagataaactaagcgaagaaaaatctggcaaaggtatatccctctccaaatactgcaca 22874621  T
Q  239 acttg 243  Q
    |||||    
T  22874622 acttg 22874626  T

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Target: chr7; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 22803930 - 22804035
Alignment:
Q  139 gtcctcaaaaaattcttggtacccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggtaaaggtatatccctttccaaatactgtaca 238  Q
    |||||||| || |||||||| |||||||||||| ||| | ||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||| |||    
T  22803930 gtcctcaacaagttcttggtgcccaaaagttaatccataggaagataaactaagcaatgacaaatctggtaaaggtaaatccctctccaaatactgcaca 22804029  T
Q  239 acttgt 244  Q
    ||||||    
T  22804030 acttgt 22804035  T

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Target: chr7; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 22870428 - 22870533
Alignment:
Q  139 gtcctcaaaaaattcttggtacccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggtaaaggtatatccctttccaaatactgtaca 238  Q
    |||||||| || |||||||| |||||||||||| ||| | ||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| |||    
T  22870428 gtcctcaacaagttcttggtgcccaaaagttaatccataggaagataaactaagcaatgacaaagctggtaaaggtatatccctctccaaatactgcaca 22870527  T
Q  239 acttgt 244  Q
    ||||||    
T  22870528 acttgt 22870533  T

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Target: chr7; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 22838646 - 22838750
Alignment:
Q  139 gtcctcaaaaaattcttggtacccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggtaaaggtatatccctttccaaatactgtaca 238  Q
    |||||||| | |||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| || ||||||||| | ||||||||||| |||    
T  22838646 gtcctcaacacattcttggtacccaaaagttaaaccaaaagtagataaactaagcgaagacaaatctggaaagggtatatccgtctccaaatactgcaca 22838745  T
Q  239 acttg 243  Q
    |||||    
T  22838746 acttg 22838750  T

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Target: chr7; HSP #11
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 22829625 - 22829730
Alignment:
Q  139 gtcctcaaaaaattcttggtacccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggtaaaggtatatccctttccaaatactgtaca 238  Q
    |||||||| | || ||||||||||||||  ||||||||||||||||||||||||| || |||||| ||| |||||||||||||| ||||||||||| |||    
T  22829625 gtcctcaacagatacttggtacccaaaaaataaaccagaagaagataaactaagcgaaaacaaatatggcaaaggtatatccctctccaaatactgcaca 22829724  T
Q  239 acttgt 244  Q
    ||||||    
T  22829725 acttgt 22829730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 21152090 - 21152016
Alignment:
Q  169 taaaccagaagaagataaactaagcaaagacaaatctggtaaaggtatatccctttccaaatactgtacaacttg 243  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||||||||||| ||||||||||| ||||||||    
T  21152090 taaaccagaagaagataaactaagtgaagacaaatctggcaaaggtatatccctctccaaatactgcacaacttg 21152016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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