View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0720_low_5 (Length: 308)
Name: NF0720_low_5
Description: NF0720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0720_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 5774523 - 5774756
Alignment:
| Q |
1 |
cagcagctgatgttctggcacaagcttgtgatatcttacattaaccagcaattcagcctcctgcaagcacgcacacactaacaacagttacctcaaccat |
100 |
Q |
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| T |
5774523 |
cagcagctgatgttctggcacaagcttgtgatatcttacattaaccagcaattcagcctcctgcaagcacgcatacactaacaacagttacctcaaccat |
5774622 |
T |
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| Q |
101 |
aaacaaccaccacagaatttgattgatcgatcgatcgaatgatgaattacctgaaaaacttccaaatgatatttggagtcgaactgagagatactgttcc |
200 |
Q |
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| T |
5774623 |
aaacaaccaccacagaatttgattgattgatcgat----tgatgaattacctgaaaaacttccaaatgaaatttggagtcgaactgagagatactgttcc |
5774718 |
T |
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| Q |
201 |
atgccatgttagtaaggctggtctggcaaacgatgatg |
238 |
Q |
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| T |
5774719 |
atgccatgttagtaaggctggtctggcaaacgatgatg |
5774756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 5768252 - 5768476
Alignment:
| Q |
1 |
cagcagctgatgttctggcacaagcttgtgatatcttacattaaccagcaattcagcctcctgcaagcacgcacacactaacaacagttacctcaaccat |
100 |
Q |
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||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||| |
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| T |
5768252 |
cagcacctgatgttctggcacaagctcgtgatatcttacgttaaccagcaattcagcctccttcaagaacgcatacactaacaacggttacctcaaccat |
5768351 |
T |
|
| Q |
101 |
aaacaaccaccacagaatttgattgatcgatcgatcgaatgatgaattacctgaaaaacttccaaatgatatttggagtcgaactgagagatactgttcc |
200 |
Q |
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||||||||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||||||| |||||||||||| | ||||| |
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| T |
5768352 |
taacaaccaccacaaaatttgattgattgatggat----tgatgaattacctgaaaaacttccaaatgaaatttggagtcgatttcagaga--------- |
5768438 |
T |
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| Q |
201 |
atgccatgttagtaaggctggtctggcaaacgatgatg |
238 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
5768439 |
gtgccatgttagtaaggctggtctggcaaacgatgatg |
5768476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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