View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0721_low_1 (Length: 489)
Name: NF0721_low_1
Description: NF0721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0721_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 26 - 465
Target Start/End: Complemental strand, 19171605 - 19171166
Alignment:
| Q |
26 |
atcaacagtaatatgactattaactctcactttaaacttatggtcccaccacaaaactctagcggtgccagcaatatcaacagccgcatcaagaaccatc |
125 |
Q |
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| T |
19171605 |
atcaacagtaatatgactattaactctcactttaaacttatggtcccaccacaaaactctagcggtgccagcaatatcaacagctgcatcaagaaccatc |
19171506 |
T |
|
| Q |
126 |
tcccttttcgctacgtcagacattactcggctcgcgtgtttcgcgagccgaagagctttaagccgagccggaagtctcagtaactgacatgacctcggtg |
225 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
19171505 |
tcccttttcgccacgtcagacattactcggctcgcgtgtttcgcgagccgaagagctttaagccgggcaggaagtctcagtaactgacatgacctcggtg |
19171406 |
T |
|
| Q |
226 |
gctgagacccggcttggaccggagctgaaccgaggagagaaccttcgtagaaaattgacatggttgttgatgagtagttaattggggctatgtttggatt |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
19171405 |
gctgagacccggcttggaccggagctgaaccgaggagagaaccttcgtagaaaattgacatggttgttgatgagtagttaattggagctatgtttggatt |
19171306 |
T |
|
| Q |
326 |
ggtgacatggacagttagaagaacttctgcgtctacaacggggaggcttggttttaaggaggtgaagttgatggagatgagatggaatgttgggtctttt |
425 |
Q |
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|||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
19171305 |
ggtgacatggacggttaaaagaacttctgcgtctacgacggggaggcttggttttaaggaagtgaagttgatggagatgagatgaaatgttgggtctttt |
19171206 |
T |
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| Q |
426 |
ggttttgctgagagaattgatgttgctgctactgctgatg |
465 |
Q |
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| T |
19171205 |
ggttttgctgagagaattgatgttgctgctactgctgatg |
19171166 |
T |
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