View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0721_low_2 (Length: 453)

Name: NF0721_low_2
Description: NF0721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0721_low_2
NF0721_low_2
[»] chr1 (8 HSPs)
chr1 (16-431)||(6270310-6270725)
chr1 (101-181)||(43413539-43413620)
chr1 (114-181)||(30389694-30389762)
chr1 (103-181)||(29152995-29153074)
chr1 (101-181)||(36699894-36699975)
chr1 (101-181)||(36715998-36716079)
chr1 (101-181)||(51162001-51162082)
chr1 (333-393)||(6261600-6261660)
[»] chr7 (2 HSPs)
chr7 (103-180)||(43094518-43094596)
chr7 (101-181)||(9157565-9157646)
[»] chr4 (1 HSPs)
chr4 (100-170)||(16476476-16476547)
[»] chr3 (1 HSPs)
chr3 (106-180)||(47117739-47117814)
[»] chr2 (6 HSPs)
chr2 (103-181)||(21646886-21646965)
chr2 (103-177)||(41670286-41670361)
chr2 (101-181)||(33891838-33891919)
chr2 (103-181)||(5998058-5998137)
chr2 (141-181)||(7634595-7634635)
chr2 (106-181)||(42460859-42460935)
[»] chr5 (5 HSPs)
chr5 (101-181)||(36977613-36977693)
chr5 (103-181)||(32270234-32270313)
chr5 (101-174)||(865807-865881)
chr5 (101-182)||(9771645-9771727)
chr5 (141-181)||(15936877-15936917)
[»] chr8 (1 HSPs)
chr8 (101-181)||(41636599-41636680)
[»] chr6 (1 HSPs)
chr6 (101-181)||(13193021-13193102)


Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 431
Target Start/End: Original strand, 6270310 - 6270725
Alignment:
Q  16 atggagaatcttgaagagactgtcacacaaatcttgcaggttcaaaatccgtttgttattttctaaaaatggtttttattattcaaaaagttatttcaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6270310 atggagaatcttgaagagactgtcacacaaatcttgcaggttcaaaatccgtttgttattttctaaaaatggtttttattattcaaaaagttatttcaaa 6270409  T
Q  116 ctcatttcttataaattaaacagtaattttgagattcggtaacttaaatattcattgtttgagattcagcataataagtattttgacattcagtaactta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6270410 ctcatttcttataaattaaacagtaattttgagattcggtaacttaaatattcattgtttgagattcagcataataagtattttgacattcagtaactta 6270509  T
Q  216 aatattcttgcaggttccgatgcaagctcatatacttgctgatatcaaccatgtaagagccgagatgacggagcggtttgaccggattgaggagtcgaac 315  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6270510 aatattcttgcaggttccgatgcaagcttatatacttgctgatatcaaccatgtaagagccgagatgacggagcggtttgaccggattgaggagtcgaac 6270609  T
Q  316 cggaggatggagcggttttttggagggatgaagattggcgtgggtggtgttgggtgggttgaggaagttgtgaggtctagtgaggaagatgagggtagtt 415  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  6270610 cggaggatggagcggttttttggagggatgaagattggcgttggtggtgttgggtgggttgagggagctgtgaggtctagtgaggaagatgagggtagtt 6270709  T
Q  416 tggggaatttggattt 431  Q
    ||||||||||||||||    
T  6270710 tggggaatttggattt 6270725  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 43413620 - 43413539
Alignment:
Q  101 aaaagttatttcaaactcatttcttataaattaaacagta-attttgagattcggtaacttaaatattcattgtttgagatt 181  Q
    ||||| ||||||||||||||||  ||||| ||||| |  | ||||||| ||||  |||||||||||||||||||||||||||    
T  43413620 aaaaggtatttcaaactcatttgatataagttaaaaaagagattttgatattcactaacttaaatattcattgtttgagatt 43413539  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 30389762 - 30389694
Alignment:
Q  114 aactcatttcttataaattaaac-agtaattttgagattcggtaacttaaatattcattgtttgagatt 181  Q
    ||||||||| ||||||||||||  ||||||||||| |||| | |||||| |||||||||||| ||||||    
T  30389762 aactcatttgttataaattaaaagagtaattttgacattcagcaacttagatattcattgttagagatt 30389694  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 181
Target Start/End: Complemental strand, 29153074 - 29152995
Alignment:
Q  103 aagttatttcaaactcatttcttataaattaaacagta-attttgagattcggtaacttaaatattcattgtttgagatt 181  Q
    ||||||||||||||||||||  ||||| ||||| |  | ||||||| ||||  ||||||| |||||||||||||||||||    
T  29153074 aagttatttcaaactcatttggtataagttaaaaaaaatattttgacattcactaacttatatattcattgtttgagatt 29152995  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 36699894 - 36699975
Alignment:
Q  101 aaaagttatttcaaactcatttcttataaatt-aaacagtaattttgagattcggtaacttaaatattcattgtttgagatt 181  Q
    ||||||||||||||||||||||  ||||| || ||| ||  ||||||| ||||  ||| |||||||||||||||| ||||||    
T  36699894 aaaagttatttcaaactcatttgatataagttaaaaaagagattttgacattcactaatttaaatattcattgttcgagatt 36699975  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 36715998 - 36716079
Alignment:
Q  101 aaaagttatttcaaactcatttcttataaatt-aaacagtaattttgagattcggtaacttaaatattcattgtttgagatt 181  Q
    ||||||||||||||||||||||  ||||| || ||| ||  ||||||| ||||  ||| |||||||||||||||| ||||||    
T  36715998 aaaagttatttcaaactcatttgatataagttaaaaaagagattttgacattcactaatttaaatattcattgttcgagatt 36716079  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 51162082 - 51162001
Alignment:
Q  101 aaaagttatttcaaactcatttcttataaattaaacagta-attttgagattcggtaacttaaatattcattgtttgagatt 181  Q
    ||||||||||||||| ||||||  ||||| ||||| |  | ||||||| ||||  |||||||||||||||||||| ||||||    
T  51162082 aaaagttatttcaaattcatttgatataagttaaaaaagagattttgacattcactaacttaaatattcattgttcgagatt 51162001  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 393
Target Start/End: Original strand, 6261600 - 6261660
Alignment:
Q  333 ttttggagggatgaagattggcgtgggtggtgttgggtgggttgaggaagttgtgaggtct 393  Q
    |||||| | |||||||||||||||||| ||||  ||||||||  |||||| ||||||||||    
T  6261600 ttttggtgagatgaagattggcgtgggaggtggagggtgggtgcaggaagctgtgaggtct 6261660  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 43094518 - 43094596
Alignment:
Q  103 aagttatttcaaactcatttcttataaattaaacagta-attttgagattcggtaacttaaatattcattgtttgagat 180  Q
    |||||||||||||||||||| |||||| ||||| | || ||||||| ||||  |||||||||||||||||||| |||||    
T  43094518 aagttatttcaaactcatttgttataagttaaaaaatagattttgatattcactaacttaaatattcattgttcgagat 43094596  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 9157565 - 9157646
Alignment:
Q  101 aaaagttatttcaaactcatttcttataaattaaacagta-attttgagattcggtaacttaaatattcattgtttgagatt 181  Q
    ||||||||||||||||||||||  ||||| ||||| |  | ||||||| ||||  |||||||||||||||||||||||||||    
T  9157565 aaaagttatttcaaactcatttgatataagttaaaaaagagattttgacattcactaacttaaatattcattgtttgagatt 9157646  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 170
Target Start/End: Complemental strand, 16476547 - 16476476
Alignment:
Q  100 aaaaagttatttcaaactcatttcttataaattaaacagta-attttgagattcggtaacttaaatattcat 170  Q
    ||||||||||||||||||||||| |||||||||||| | || ||||||| |||   ||||||||||||||||    
T  16476547 aaaaagttatttcaaactcatttattataaattaaaaaatagattttgacatttactaacttaaatattcat 16476476  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 180
Target Start/End: Complemental strand, 47117814 - 47117739
Alignment:
Q  106 ttatttcaaactcatttcttataaattaaacagtaa-ttttgagattcggtaacttaaatattcattgtttgagat 180  Q
    |||||||||||||||||  ||||||||||| | ||| |||||| ||||  ||||||||||||||||||| ||||||    
T  47117814 ttatttcaaactcatttagtataaattaaaaaataaattttgacattcattaacttaaatattcattgtctgagat 47117739  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 21646886 - 21646965
Alignment:
Q  103 aagttatttcaaactcatttcttataaatt-aaacagtaattttgagattcggtaacttaaatattcattgtttgagatt 181  Q
    |||||||||||||||||||| ||||||||| ||| ||  ||||||| ||||  |||| ||||||||||||||| ||||||    
T  21646886 aagttatttcaaactcatttgttataaattaaaaaagatattttgacattcactaacctaaatattcattgttcgagatt 21646965  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 41670361 - 41670286
Alignment:
Q  103 aagttatttcaaactcatttcttataaattaaacagta-attttgagattcggtaacttaaatattcattgtttga 177  Q
    ||||||||||||||||||||  ||||| ||||| | || ||||||| ||||  |||||||||||||||||||||||    
T  41670361 aagttatttcaaactcatttgatataagttaaaaaatagattttgacattcattaacttaaatattcattgtttga 41670286  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 33891919 - 33891838
Alignment:
Q  101 aaaagttatttcaaactcatttcttataaattaaacagta-attttgagattcggtaacttaaatattcattgtttgagatt 181  Q
    ||||||||||||||||||||||  ||||| ||||| |  | ||||||| ||||  |||||||||||||||||||| ||||||    
T  33891919 aaaagttatttcaaactcatttgatataagttaaaaaagagattttgacattcactaacttaaatattcattgttcgagatt 33891838  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 181
Target Start/End: Complemental strand, 5998137 - 5998058
Alignment:
Q  103 aagttatttcaaactcatttcttataaattaaacagta-attttgagattcggtaacttaaatattcattgtttgagatt 181  Q
    ||||||||||||||||||||  ||||| ||||| |  | ||||||| ||||  |||||||||||||||||||| ||||||    
T  5998137 aagttatttcaaactcatttaatataagttaaaaaagagattttgacattcactaacttaaatattcattgttcgagatt 5998058  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 7634595 - 7634635
Alignment:
Q  141 attttgagattcggtaacttaaatattcattgtttgagatt 181  Q
    ||||||| ||||  |||||||||||||||||||||||||||    
T  7634595 attttgatattcactaacttaaatattcattgtttgagatt 7634635  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 181
Target Start/End: Original strand, 42460859 - 42460935
Alignment:
Q  106 ttatttcaaactcatttcttataaatta-aacagtaattttgagattcggtaacttaaatattcattgtttgagatt 181  Q
    ||||||||||||||||| |||||| ||| || ||  ||||||| ||||  |||| ||||||||||||||| ||||||    
T  42460859 ttatttcaaactcatttgttataagttataaaagatattttgacattcattaacctaaatattcattgttcgagatt 42460935  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 36977693 - 36977613
Alignment:
Q  101 aaaagttatttcaaactcatttcttataaattaaacagtaattttgagattcggtaacttaaatattcattgtttgagatt 181  Q
    ||||||||||||||||||||||  ||||  | ||| ||  ||||||| ||||  |||||||||||||||||||| ||||||    
T  36977693 aaaagttatttcaaactcatttaatatagttaaaaaagagattttgacattcactaacttaaatattcattgttcgagatt 36977613  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 32270234 - 32270313
Alignment:
Q  103 aagttatttcaaactcatttcttataaattaaacagta-attttgagattcggtaacttaaatattcattgtttgagatt 181  Q
    ||||||||||||||||||||  ||||| ||||| |  | ||||||| ||||  |||||||||||||||||||| ||||||    
T  32270234 aagttatttcaaactcatttgatataagttaaaaaagagattttgacattcactaacttaaatattcattgttcgagatt 32270313  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 865881 - 865807
Alignment:
Q  101 aaaagttatttcaaactcatttcttataaatt-aaacagtaattttgagattcggtaacttaaatattcattgtt 174  Q
    ||||||||||||||||||||||  ||||| || ||| ||  ||||||| ||||  ||||||||||||||||||||    
T  865881 aaaagttatttcaaactcatttaatataagttaaaaaagagattttgacattcactaacttaaatattcattgtt 865807  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 182
Target Start/End: Original strand, 9771645 - 9771727
Alignment:
Q  101 aaaagttatttcaaactcatttcttataaatt-aaacagtaattttgagattcggtaacttaaatattcattgtttgagattc 182  Q
    ||||||||||||||||||||||  | |||||| ||| ||  ||||||| ||||  |||||||||||||||| ||| |||||||    
T  9771645 aaaagttatttcaaactcatttgatttaaattaaaaaagagattttgacattcactaacttaaatattcatcgttcgagattc 9771727  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 15936877 - 15936917
Alignment:
Q  141 attttgagattcggtaacttaaatattcattgtttgagatt 181  Q
    ||||||| ||||  |||||||||||||||||||||||||||    
T  15936877 attttgacattcattaacttaaatattcattgtttgagatt 15936917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 41636680 - 41636599
Alignment:
Q  101 aaaagttatttcaaactcatttcttataaattaaacagta-attttgagattcggtaacttaaatattcattgtttgagatt 181  Q
    ||||||||||| ||||||||||  ||||| ||||| |  | ||||||| ||||  |||||||||||||||||||| ||||||    
T  41636680 aaaagttatttgaaactcatttaatataagttaaaaaagagattttgacattcactaacttaaatattcattgttcgagatt 41636599  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 13193102 - 13193021
Alignment:
Q  101 aaaagttatttcaaactcatttcttataaattaaacagta-attttgagattcggtaacttaaatattcattgtttgagatt 181  Q
    ||||||||||||||||||||||  ||||| ||||| | || |||| || ||||  || ||||||||||||||||| ||||||    
T  13193102 aaaagttatttcaaactcatttgatataagttaaaaaatagatttcgacattcactagcttaaatattcattgttcgagatt 13193021  T

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