View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0722_low_1 (Length: 698)
Name: NF0722_low_1
Description: NF0722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0722_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 35 - 678
Target Start/End: Complemental strand, 37744370 - 37743728
Alignment:
| Q |
35 |
atcaagttcaaaaaataaattctatttgcatatccttaccattcgattaacttgcttttctaaatatggtcaattcattgaattttttattcagcataat |
134 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37744370 |
atcaagttcaaaaaataaattatatttgcatatccttatcattcgattaacttgcttttctaaatatggtcaattcattgaattttttattcggcataac |
37744271 |
T |
|
| Q |
135 |
aggattgtgagtgcttaaacatccttatagtatatggtagtatatatgggcaaaggatgtttaacaacattaacaggcttttcttgaatcaaaactatag |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
37744270 |
aggattgtgagtgcttaaacatccttatagtatatggtagtatatatgggcaaaggatgtttaacaacattaacaggcttttcttaaatcaaaactaaag |
37744171 |
T |
|
| Q |
235 |
tatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccaaagttgatgtctcggaaacttgtggcacaacagtatcatctcgaggac |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37744170 |
tatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagttgatttctcggaaacttgtggcacaacagtatcatctcg-ggac |
37744072 |
T |
|
| Q |
335 |
aaatcaggagttgatattggaattaaatattcagttggcctctaaaagtcttcatgaacattgctgcatacagatgcagtacttggaggtacctcagtgt |
434 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37744071 |
aaatcaggagttgatatttgaattaaatattcagttggcctctaaaagtcttcatgaacattgctgcatacagatgcagtactaggaggtacctcagtgt |
37743972 |
T |
|
| Q |
435 |
agttctcctaaagagcataaagcagaaaatcaaatgannnnnnncttacaactctgaatgaaatatgaaggtcatcatggtcaacagttaaattaaaaat |
534 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37743971 |
agttctcctaaagagcataaagcagaaaatcaaatgatttttttcttacaactctgaatgaaatatgaaggtcatcatggtcaacagttaaattaaaaat |
37743872 |
T |
|
| Q |
535 |
acttcgtccattcctttttcttgtcattttaagattatttacgcggtccatatttatgagtttgttttccctttttattttcattcagagtcacagttcc |
634 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37743871 |
acttcgtccattcctttttcttgtcattttaagattatttacgcggtccatatttatgagtttgctttccctttttattttcattcagagtcacagttcc |
37743772 |
T |
|
| Q |
635 |
atatagtatatgctagcatgtgatttcattaaatttgatgatgt |
678 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37743771 |
atatagtatatgctagcatgtgatttcattaaatttgatgatgt |
37743728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 170 - 678
Target Start/End: Original strand, 34694158 - 34694680
Alignment:
| Q |
170 |
ggtagtatatatgggcaaaggatgtttaaca--------acattaacaggcttttcttgaatcaaaactatagtatcattgctcaatgcttgaaacttaa |
261 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34694158 |
ggtagcatatatgggcaaaggatgtttaacatttaacaaacattaacaggctt--cttgaatcaaaactatagtatcattgctcaatgcttgaaacttaa |
34694255 |
T |
|
| Q |
262 |
aaattctatcctaccatttaaaccaaagttgatgtctcggaaacttgtggcacaacagtatcatctcgaggacaaatcaggagttgatattggaattaaa |
361 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34694256 |
aaattctatcctaccatttaaaccagagctgatgtctcggaaacttgtggcacagcagtatcatctcgaggacaaatcaggagttgatattggaattaaa |
34694355 |
T |
|
| Q |
362 |
tattcagttggcctctaaaagtcttcatgaacattgctgcatacag----atgcagtacttggaggtacctcagtgtagttctcctaaagagcataaagc |
457 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34694356 |
tattcagttggcctccaaaagtcttcatgaacactgctgcatacagatgcatgcagtactaggaggtacctcagtgtagttctcctaaagagcataaagc |
34694455 |
T |
|
| Q |
458 |
agaaaatcaaatgannnnnnncttacaactctgaatgaaatatgaaggtcatcatggtcaacagttaaattaaaa----atacttcgtccattccttttt |
553 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34694456 |
agaaaatcaaatgatttttttcttacaactctgaatgaaatatgaaggtcatcatggtcaacagttaaattaaaaatatatacttcgtccattccttttt |
34694555 |
T |
|
| Q |
554 |
cttgtcattttaagattatttacgcggtccatatttatgagtttgttttccctttttattttcattcagagtcacagttccatatagtatatgctagcat |
653 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34694556 |
cttgtcattttaagattatttacgcagtccatatttatgagtttgctttccctttttattttcattcagagtcgcagttccatatagtatatgctagcat |
34694655 |
T |
|
| Q |
654 |
gtgatttcattaaatttgatgatgt |
678 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
34694656 |
ttgatttcattaaatttgatgatgt |
34694680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 170 - 678
Target Start/End: Original strand, 34716570 - 34717092
Alignment:
| Q |
170 |
ggtagtatatatgggcaaaggatgtttaaca--------acattaacaggcttttcttgaatcaaaactatagtatcattgctcaatgcttgaaacttaa |
261 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34716570 |
ggtagcatatatgggcaaaggatgtttaacatttaacaaacattaacaggctt--cttgaatcaaaactatagtatcattgctcaatgcttgaaacttaa |
34716667 |
T |
|
| Q |
262 |
aaattctatcctaccatttaaaccaaagttgatgtctcggaaacttgtggcacaacagtatcatctcgaggacaaatcaggagttgatattggaattaaa |
361 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34716668 |
aaattctatcctaccatttaaaccagagctgatgtctcggaaacttgtggcacagcagtatcatctcgaggacaaatcaggagttgatattggaattaaa |
34716767 |
T |
|
| Q |
362 |
tattcagttggcctctaaaagtcttcatgaacattgctgcatacag----atgcagtacttggaggtacctcagtgtagttctcctaaagagcataaagc |
457 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34716768 |
tattcagttggcctccaaaagtcttcatgaacactgctgcatacagatgcatgcagtactaggaggtacctcagtgtagttctcctaaagagcataaagc |
34716867 |
T |
|
| Q |
458 |
agaaaatcaaatgannnnnnncttacaactctgaatgaaatatgaaggtcatcatggtcaacagttaaattaaaa----atacttcgtccattccttttt |
553 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34716868 |
agaaaatcaaatgatttttttcttacaactctgaatgaaatatgaaggtcatcatggtcaacagttaaattaaaaatatatacttcgtccattccttttt |
34716967 |
T |
|
| Q |
554 |
cttgtcattttaagattatttacgcggtccatatttatgagtttgttttccctttttattttcattcagagtcacagttccatatagtatatgctagcat |
653 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34716968 |
cttgtcattttaagattatttacgcagtccatatttatgagtttgctttccctttttattttcattcagagtcgcagttccatatagtatatgctagcat |
34717067 |
T |
|
| Q |
654 |
gtgatttcattaaatttgatgatgt |
678 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
34717068 |
ttgatttcattaaatttgatgatgt |
34717092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 38 - 174
Target Start/End: Original strand, 34693010 - 34693144
Alignment:
| Q |
38 |
aagttcaaaaaataaattctatttgcatatccttaccattcgattaacttgcttttctaaatatggtcaattcattgaattttttattcagcataatagg |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
34693010 |
aagttcaaaaaataaattctatttgcatattcttatcattcgattaacttgcttt-ctaaatatggtcaattcattgaatttt-tattcagcataacagg |
34693107 |
T |
|
| Q |
138 |
attgtgagtgcttaaacatccttatagtatatggtag |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34693108 |
attgtgagtgcttaaacatccttatagtatatggtag |
34693144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 38 - 174
Target Start/End: Original strand, 34715422 - 34715556
Alignment:
| Q |
38 |
aagttcaaaaaataaattctatttgcatatccttaccattcgattaacttgcttttctaaatatggtcaattcattgaattttttattcagcataatagg |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
34715422 |
aagttcaaaaaataaattctatttgcatattcttatcattcgattaacttgcttt-ctaaatatggtcaattcattgaatttt-tattcagcataacagg |
34715519 |
T |
|
| Q |
138 |
attgtgagtgcttaaacatccttatagtatatggtag |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34715520 |
attgtgagtgcttaaacatccttatagtatatggtag |
34715556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 197 - 552
Target Start/End: Complemental strand, 9747695 - 9747340
Alignment:
| Q |
197 |
aacaacattaacaggcttttcttgaatcaaaactatagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccaaagttgatgt |
296 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||| |||| || |||||| |
|
|
| T |
9747695 |
aacaacattaaccggcttttcttaaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattctatcgtaccatttagaccagagctgatgt |
9747596 |
T |
|
| Q |
297 |
ctcggaaa-cttgtggcacaacagtatcatctc--gaggacaaatcaggagttgatattggaattaaatattcagttggcctctaaaagtcttcatgaac |
393 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||||||||| || |
|
|
| T |
9747595 |
ctcggaaaacttgtggcacagcagtatcatctcttgaggacaaatcaggagttgatattggacttaaatattcggttcgcctccaaaagtcttcatggac |
9747496 |
T |
|
| Q |
394 |
attgctgcatacagatgcagtacttggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatgannnnnnncttacaactctgaat |
493 |
Q |
| |
|
| ||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
9747495 |
actgctgcacacagatgcaggactaggaggtacctcagtgtagttctcctaaagagcatatagcagaaaatcaaatgatttttta--tacaactctgaat |
9747398 |
T |
|
| Q |
494 |
gaaatatgaaggtcatcatggtcaacagttaaattaaaaatacttcgtccattcctttt |
552 |
Q |
| |
|
||||||| |||||| |||||| ||||||||||| |||||||| | ||||||||||||| |
|
|
| T |
9747397 |
gaaatataaaggtcgtcatgggcaacagttaaa-taaaaatattctgtccattcctttt |
9747340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 213 - 471
Target Start/End: Original strand, 10289829 - 10290092
Alignment:
| Q |
213 |
ttttcttgaatcaaaactatagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccaaagttgatgtctcggaaac--ttgtg |
310 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||| | |||||||| |||| ||||| |
|
|
| T |
10289829 |
ttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtg |
10289928 |
T |
|
| Q |
311 |
gcacaacagtatcatctcgag--gacaaatcaggagtt-gatattggaattaaatattcagttggcctctaaaagtcttcatgaacattgctgcatacag |
407 |
Q |
| |
|
|||||||||||| | || | |||| |||||||||| ||||||||| |||||||||| || ||||| ||||||||||||||||| ||||||| ||| |
|
|
| T |
10289929 |
gcacaacagtattgtttcttgctgacagatcaggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcatgaacactgctgcacacat |
10290028 |
T |
|
| Q |
408 |
atgcagtacttggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatga |
471 |
Q |
| |
|
|||||| ||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10290029 |
atgcaggactaggaggtacctcggtgtagttctcctaaagagcatgtagcagaaaatcaaatga |
10290092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 350 - 471
Target Start/End: Original strand, 10298094 - 10298213
Alignment:
| Q |
350 |
attggaattaaatattcagttggcctctaaaagtcttcatgaacattgctgcatacagatgcagtacttggaggtacctcagtgtagttctcctaaagag |
449 |
Q |
| |
|
|||||| ||||| |||| || ||||| | ||||||||||||||| ||||||| ||| ||| | ||| |||||||||||||||||||||||| |||||| |
|
|
| T |
10298094 |
attggatttaaacattcgattcgcctccagaagtcttcatgaacactgctgcacaca--tgctggactaggaggtacctcagtgtagttctccaaaagag |
10298191 |
T |
|
| Q |
450 |
cataaagcagaaaatcaaatga |
471 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
10298192 |
catatagcagaaaatcaaatga |
10298213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 256 - 328
Target Start/End: Original strand, 10298010 - 10298083
Alignment:
| Q |
256 |
acttaaaaattctatcctaccatttaaaccaaagttgatgtctcggaaa-cttgtggcacaacagtatcatctc |
328 |
Q |
| |
|
|||||| |||| ||| |||||||||||||| || ||||||||| |||| ||||||||||||||||||| |||| |
|
|
| T |
10298010 |
acttaagaattttattgtaccatttaaaccagagctgatgtctctgaaaacttgtggcacaacagtatcgtctc |
10298083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 44 - 149
Target Start/End: Original strand, 48772067 - 48772172
Alignment:
| Q |
44 |
aaaaaataaattctatttgcatatccttaccattcgattaacttgc-ttttctaaatatggtcaattcattgaattttttattcagcataataggattgt |
142 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
48772067 |
aaaaaataaattctatttgcatattcttatcattcgattaacttgctttttctaaatatggtcaattcattgaa-tttttattcagcataacaggattgt |
48772165 |
T |
|
| Q |
143 |
gagtgct |
149 |
Q |
| |
|
||||||| |
|
|
| T |
48772166 |
gagtgct |
48772172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 48776330 - 48776246
Alignment:
| Q |
38 |
aagttcaaaaaataaattctatttgcatatccttaccattcgattaac-ttgcttttctaaatatggtcaattcattgaattttt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48776330 |
aagttcaaaaaataaattctatttgcatattcttatcattcgattaactttgcttttttaaatatggtcaattcattgaattttt |
48776246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 38 - 149
Target Start/End: Original strand, 16079958 - 16080069
Alignment:
| Q |
38 |
aagttcaaaaaataaattctatttgcatatccttaccattcgattaac-ttgcttttctaaatatggtcaattcattgaattttttattcagcataatag |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| |||||||||||||| ||||||| |||||||||||||||| || |
|
|
| T |
16079958 |
aagttcaaaaaataaattctatttgcatattcttatcattcgattaactttgcttttttaaatatggtcaatacattgaa-tttttattcagcataacag |
16080056 |
T |
|
| Q |
137 |
gattgtgagtgct |
149 |
Q |
| |
|
||||||||||||| |
|
|
| T |
16080057 |
gattgtgagtgct |
16080069 |
T |
|
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