View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0722_low_12 (Length: 284)
Name: NF0722_low_12
Description: NF0722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0722_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 1669291 - 1669554
Alignment:
| Q |
1 |
ttttgcaacatcaaagtaagcttgcttcttatggctaaattgacagtaccatatctaactcatgttcatttannnnnnnagtttgcacaaaaggtgcttg |
100 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1669291 |
ttttgcatcatcaaagtaagcttgcttcttgtggctaaattgacagtaccatatctaactcatgttcatttctttttttagtttgcacaaaaggtgcttg |
1669390 |
T |
|
| Q |
101 |
atgaaatgtctacttcatatcaatattttttaatgtttatttatagcatctacttaaaagttagaactgaaaaatactttaatagtttgatttttcgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1669391 |
atgaaatgtctacttcatatcaatattttttaatgtttatttatagtatctacttataagttagaattgaaaaatactttaatagtttgatttttcgatt |
1669490 |
T |
|
| Q |
201 |
ctcttttattttaatactgttgtacatgattgttaatgcaggagaacaaggatgttgatgatgt |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1669491 |
ctcttttattttaatactgttgtacatgattgttaatgcaggagaacatggatgttgatgatgt |
1669554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 44273188 - 44272925
Alignment:
| Q |
1 |
ttttgcaacatcaaagtaagcttgcttcttatggctaaattgacagtaccatatctaactcatgttcatttannnnnnnagtttgcacaaaaggtgcttg |
100 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44273188 |
ttttgcatcatcaaagtaagcttgcttcttgtggctaaattgacagtaccatatctaactcatgttcatttctttttttagtttgcacaaaaggtgcttg |
44273089 |
T |
|
| Q |
101 |
atgaaatgtctacttcatatcaatattttttaatgtttatttatagcatctacttaaaagttagaactgaaaaatactttaatagtttgatttttcgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44273088 |
atgaaatgtctacttcatatcaatattttttaatgtttatttatagtatctacttataagttagaattgaaaaatactttaatagtttgatttttcgatt |
44272989 |
T |
|
| Q |
201 |
ctcttttattttaatactgttgtacatgattgttaatgcaggagaacaaggatgttgatgatgt |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44272988 |
ctcttttattttaatactgttgtacatgattgttaatgcaggagaacatggatgttgatgatgt |
44272925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 20872914 - 20872964
Alignment:
| Q |
80 |
agtttgcacaaaaggtgcttgatgaaatgtctacttcatatcaatattttt |
130 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
20872914 |
agtttgcacacaaggtgcttgatgaaatgtctacttcatatcaatattttt |
20872964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 26074412 - 26074149
Alignment:
| Q |
1 |
ttttgcaacatcaaagtaagcttgcttcttatggctaaattgacagtaccatatctaactcatgttcatttannnnnnnagtttgcacaaaaggtgcttg |
100 |
Q |
| |
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||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
26074412 |
ttttgcatcatcaaagtaagcttgcttcttgtggctaaattgacagtaccatatctaactcatgttcatttctttttttagtttgcacaaaaggtgcttg |
26074313 |
T |
|
| Q |
101 |
atgaaatgtctacttcatatcaatattttttaatgtttatttatagcatctacttaaaagttagaactgaaaaatactttaatagtttgatttttcgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
26074312 |
atgaaatgtctacttcatatcaatattttttaatgtttatttatagtatctacttataagttagaattgaaaaatactttaatagtttgattttttgatt |
26074213 |
T |
|
| Q |
201 |
ctcttttattttaatactgttgtacatgattgttaatgcaggagaacaaggatgttgatgatgt |
264 |
Q |
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|||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26074212 |
ctcttttactttaatactattgtacatgattgttaatgcaggagaacatggatgttgatgatgt |
26074149 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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