View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0722_low_16 (Length: 257)
Name: NF0722_low_16
Description: NF0722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0722_low_16 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 18639743 - 18639987
Alignment:
| Q |
13 |
tgagatggacatcatcacaagatttggacaaaaactacagtttagagatagagctttatataatcacagtggtggtgcaatttgatcaattttattgtga |
112 |
Q |
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| T |
18639743 |
tgagattgacataatcacaagatttggacaaaaactacagttaagagatagagctttatataatcacagtggtggtgcaatttgatcaattttattgtga |
18639842 |
T |
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| Q |
113 |
atgaaagcatgcacttagaaagtggatttcacttagaattaaatagagttgtagaaaatagtggattattagcatataaaaggagttaaaacataaggta |
212 |
Q |
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| T |
18639843 |
atgaaagcatgcacttagaaagtggatttcacttagaattaaatagagttgtagaaaatagtggattattagcatataaaaggagttaaaacataaggta |
18639942 |
T |
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| Q |
213 |
ttatagcatttgtagcgtgattagcaaaaagaataaagaattacc |
257 |
Q |
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| T |
18639943 |
ttatagcatttgtagcgtgattagcaaaaagaataaagaattacc |
18639987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 61 - 227
Target Start/End: Complemental strand, 18632258 - 18632092
Alignment:
| Q |
61 |
tagagctttatataatcacagtggtggtgcaatttgatcaattttattgtgaatgaaagcatgcacttagaaagtggatttcacttagaattaaatagag |
160 |
Q |
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| T |
18632258 |
tagagctttttataatcacaacggcagcgtaatttgatcgatcttacggtgaatagaagcatgcacttaggaagtggatttcacttagaattaaacggag |
18632159 |
T |
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| Q |
161 |
ttgtagaaaatagtggattattagcatataaaaggagttaaaacataaggtattatagcatttgtag |
227 |
Q |
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| T |
18632158 |
ttgtagaaaataatgaattgttagcatataaaaggagttaaaacataaggtattttagcatttgtag |
18632092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 1837629 - 1837450
Alignment:
| Q |
13 |
tgagatggacatcatcacaagatttggacaaaaactacagtttagagatagagctttatataatcacagtggtggtgcaatttgatcaattttattgtga |
112 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1837629 |
tgagattgacataatcacaagatttggacaaaaactacagttcagagatagagctttatataatcacagtggtggtgcaatttgatcaattttattgtga |
1837530 |
T |
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| Q |
113 |
atgaaagcatgcacttagaaagtggatttcacttagaattaaatagagttgtagaaaatagtggattattagcatataaa |
192 |
Q |
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| T |
1837529 |
atggaagcatgcacttagaaagtggatttcacttagaattaaatagagttgtagaaaatagtggattgttagcatataaa |
1837450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 41384411 - 41384488
Alignment:
| Q |
180 |
attagcatataaaaggagttaaaacataaggtattatagcatttgtagcgtgattagcaaaaagaataaagaattacc |
257 |
Q |
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| T |
41384411 |
attagcatataaaaggagttaaaagataaggtattttagcatttattgcgagattagcaaaaagaataaagaattacc |
41384488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 41384265 - 41384379
Alignment:
| Q |
13 |
tgagatggacatcatcacaagatttggacaaaaactacagtttagagatagagctttatataatcacagtggtggtgcaatttgatcaattttattgtga |
112 |
Q |
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| T |
41384265 |
tgagattgacataatcacgggatttggacaaaaactacagtttagag------cttcatataatcacagtggcagcgtaatttgatcaattttgcagtga |
41384358 |
T |
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| Q |
113 |
atgaaagcatgcacttagaaa |
133 |
Q |
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| T |
41384359 |
atcgaagcatgcacttagaaa |
41384379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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