View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0722_low_2 (Length: 643)
Name: NF0722_low_2
Description: NF0722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0722_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 30 - 626
Target Start/End: Complemental strand, 38765899 - 38765317
Alignment:
| Q |
30 |
tattgtgcatatgtcatgagccaaaggaggattaatacttgacgggttttcttttccctgtaaggtacgtttcgtgttgatcataatataataatagaga |
129 |
Q |
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| T |
38765899 |
tattgtgcatatgtcatgagccaaaggaggattaatacttgacgggttttcttttccctgtaaggtacgtttcgtgttgatcataata----------ga |
38765810 |
T |
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| Q |
130 |
gagaaatagaagaaacattataatgcatgtttggatannnnnnnctccttttcataatgcttccgtttacttaactctaaatagactagactaatggagt |
229 |
Q |
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| T |
38765809 |
gagaaatagaagaaacattataatgcatgtttggatatttttttctccttttcataatgcttccgtttacttcactccaaatagactagactaatggagt |
38765710 |
T |
|
| Q |
230 |
acgtctcactttaattttctcaaactcacacgactcatacaaactaataaaaagtaggttaataaaatctatgaacgtacatgtcactttaatttcaaat |
329 |
Q |
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| T |
38765709 |
acgtctcactttaattttctcaaactcacacgacttatacaaattaataaaaagtaggttgataaaatctatcaacgtacatgtcactttaatttcaaat |
38765610 |
T |
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| Q |
330 |
atatggttatgctccgttattgcggatcaagactcccttaaatcacgaggtcaacatcattgatcacatgaatttcaagcactatattgtgaacttaatc |
429 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38765609 |
atatagttatgctccgttattgcggatcaagactctcttaaatcacgaggtcgacatcattgatcacatgaatttcaagcactatattgtgaatttaatc |
38765510 |
T |
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| Q |
430 |
tagagaaatctcaattgtggacaattcattttcccctataccactcctttcaggttggattattttatttttcaatttttccaaatagctagaaacatta |
529 |
Q |
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| T |
38765509 |
cagagaaatctcaattgtggacaattcattttcccctataccactcctttcaggttggattattttatttttcaatttttccaaatagctagaaacatta |
38765410 |
T |
|
| Q |
530 |
atcgttccatacataaattaaatgatagtaaattcctgaaataacatacacctacattttgtacgaattgattccatgtatatggtttaattccagc |
626 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38765409 |
atcgttc----cataaattaaatgatagtaaattcctgaaataacatacacctaccttttgtacgaattgattccatgtatatggtttaattccagc |
38765317 |
T |
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