View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0722_low_9 (Length: 320)
Name: NF0722_low_9
Description: NF0722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0722_low_9 |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 3455444 - 3455746
Alignment:
| Q |
18 |
acatcatcaaattgtcttcatcttccccactagactcattcaaatccacaaagttaggcatatcaaccttgacagacatattagtaacattatgctccac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3455444 |
acatcatcaaattgtcttcatcttccccactagactcattcaaatccacaaagttaggcatatcaaccttgacagacatattagtaacattatgctcaac |
3455543 |
T |
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| Q |
118 |
aaaaatctgtccatcaattccttcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatcc |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455544 |
aaaaatttgtccatcaattccttcacccacagcatagatggcaatctcatctgcaatgctgtctagatcaacttgaacaaagtcattctcaatcctatcc |
3455643 |
T |
|
| Q |
218 |
attttacaccacagcctaatctcatggtcttgataaccccagctacacacaagttgcctaataacacctactttccaagcatctggaactaagtcagaca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455644 |
attttacaccacagcctaatctcatggtcttgataaccccagctacacacaagttgcctaataacacctactttccaagcatctggaactaagtcagaca |
3455743 |
T |
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| Q |
318 |
caa |
320 |
Q |
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||| |
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| T |
3455744 |
caa |
3455746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 46239213 - 46238911
Alignment:
| Q |
18 |
acatcatcaaattgtcttcatcttccccactagactcattcaaatccacaaagttaggcatatcaaccttgacagacatattagtaacattatgctccac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46239213 |
acatcatcaaattgtcttcatcttccccactagactcattcaaatccacaaagttaggcatatcaaccttgacagacatattagtaacattatgctcaac |
46239114 |
T |
|
| Q |
118 |
aaaaatctgtccatcaattccttcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatcc |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46239113 |
aaaaatttgtccatcaattccttcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatcc |
46239014 |
T |
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| Q |
218 |
attttacaccacagcctaatctcatggtcttgataaccccagctacacacaagttgcctaataacacctactttccaagcatctggaactaagtcagaca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46239013 |
attttacaccacagcctaatctcatggtcttgataaccccagctacaaacaagttgcctaataacacctactttccaagcatctggaactaagtcagaca |
46238914 |
T |
|
| Q |
318 |
caa |
320 |
Q |
| |
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||| |
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| T |
46238913 |
caa |
46238911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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