View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0723_low_10 (Length: 251)

Name: NF0723_low_10
Description: NF0723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0723_low_10
NF0723_low_10
[»] chr1 (10 HSPs)
chr1 (30-251)||(50912103-50912324)
chr1 (76-249)||(38138197-38138370)
chr1 (79-249)||(45984033-45984203)
chr1 (76-190)||(7891348-7891462)
chr1 (77-249)||(43044771-43044943)
chr1 (77-249)||(3300505-3300677)
chr1 (77-249)||(43067048-43067220)
chr1 (77-166)||(43076978-43077067)
chr1 (77-249)||(43083615-43083787)
chr1 (76-251)||(40035028-40035203)
[»] chr8 (2 HSPs)
chr8 (77-249)||(4619460-4619632)
chr8 (76-190)||(1846259-1846373)
[»] chr4 (2 HSPs)
chr4 (80-249)||(4231239-4231408)
chr4 (76-164)||(19964974-19965062)
[»] chr5 (1 HSPs)
chr5 (76-249)||(16348917-16349090)
[»] chr2 (4 HSPs)
chr2 (76-251)||(34690616-34690791)
chr2 (76-251)||(34713028-34713203)
chr2 (76-189)||(33860604-33860718)
chr2 (77-166)||(16231958-16232047)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 50912103 - 50912324
Alignment:
Q  30 aaatcccacaatgtcaccaggaatggcctcaataagagcttcgtcgtggggcaaaagtcaccaccattccacgtttcaagacaccggtctcaatacgtcc 129  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50912103 aaatcccacaatgtcaccaggaatggcctcaatgagagcttcgtcgtggggcaaaagtcaccaccattccacgtttcaagacaccggtctcaatacgtcc 50912202  T
Q  130 cacaggtacaattccaatttctccaatcttgtagacaacctgaagtggtaattggagaggcatgtgtgatggtctattaggctccttgatttgatcaaga 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50912203 cacaggtacaattccaatttctccaatcttgtagacaacctgaagtggtaatcggagaggcatgtgtgatggtctattaggctccttgatttgatcaaga 50912302  T
Q  230 gcttcaataagggtgggacctt 251  Q
    ||||||||||||||||||||||    
T  50912303 gcttcaataagggtgggacctt 50912324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 76 - 249
Target Start/End: Complemental strand, 38138370 - 38138197
Alignment:
Q  76 tggggcaaaagtcaccaccattccacgtttcaagacaccggtctcaatacgtcccacaggtacaattccaatttctccaatcttgtagacaacctgaagt 175  Q
    |||||||||||||||| |||||||  |||||||||||||| ||||||  ||||||||||| ||| |||||||| ||||||||||||||||| ||||||||    
T  38138370 tggggcaaaagtcaccgccattcctggtttcaagacaccgctctcaacccgtcccacaggcacagttccaattcctccaatcttgtagacatcctgaagt 38138271  T
Q  176 ggtaattggagaggcatgtgtgatggtctattaggctccttgatttgatcaagagcttcaataagggtgggacc 249  Q
    |||||| |||||||| ||| | || | || ||||||||||||||||| ||||||||||||| ||||||||||||    
T  38138270 ggtaatcggagaggcttgtctaatagcctcttaggctccttgatttggtcaagagcttcaagaagggtgggacc 38138197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 79 - 249
Target Start/End: Complemental strand, 45984203 - 45984033
Alignment:
Q  79 ggcaaaagtcaccaccattccacgtttcaagacaccggtctcaatacgtcccacaggtacaattccaatttctccaatcttgtagacaacctgaagtggt 178  Q
    ||||||||||| |||||||||| | ||||||  ||| ||||||| |||||||||||| ||| |||| ||| ||||||||||||||||| |||||||||||    
T  45984203 ggcaaaagtcagcaccattccagggttcaaggaaccagtctcaacacgtcccacaggcacagttccgattcctccaatcttgtagacatcctgaagtggt 45984104  T
Q  179 aattggagaggcatgtgtgatggtctattaggctccttgatttgatcaagagcttcaataagggtgggacc 249  Q
    | |  ||||||| ||| |||||| ||  ||||||| |||||||| |||| |||||||| |||||| |||||    
T  45984103 attctgagaggcttgtctgatggcctcataggctcgttgatttggtcaatagcttcaagaagggttggacc 45984033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 190
Target Start/End: Complemental strand, 7891462 - 7891348
Alignment:
Q  76 tggggcaaaagtcaccaccattccacgtttcaagacaccggtctcaatacgtcccacaggtacaattccaatttctccaatcttgtagacaacctgaagt 175  Q
    |||||||||||||| |||||||||| ||||||||| ||| | |||||  ||||||||||| |||||||||||| ||||||||||||||||| | ||||||    
T  7891462 tggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattccaattcctccaatcttgtagacatcttgaagt 7891363  T
Q  176 ggtaattggagaggc 190  Q
    |||||| ||||||||    
T  7891362 ggtaatcggagaggc 7891348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 43044771 - 43044943
Alignment:
Q  77 ggggcaaaagtcaccaccattccacgtttcaagacaccggtctcaatacgtcccacaggtacaattccaatttctccaatcttgtagacaacctgaagtg 176  Q
    ||||||||||| || ||||||||| |||| | |||||| ||||| | ||| |||||||| ||| |||||||| ||||||||||||||||| |||||||||    
T  43044771 ggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagttccaattcctccaatcttgtagacatcctgaagtg 43044870  T
Q  177 gtaattggagaggcatgtgtgatggtctattaggctccttgatttgatcaagagcttcaataagggtgggacc 249  Q
    ||| | |||| ||| ||| ||| || || |||||||| |||||||| ||||| || |||| |||||| |||||    
T  43044871 gtagtcggaggggcttgtctgaaggcctcttaggctcattgatttggtcaagggcctcaagaagggttggacc 43044943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 3300505 - 3300677
Alignment:
Q  77 ggggcaaaagtcaccaccattccacgtttcaagacaccggtctcaatacgtcccacaggtacaattccaatttctccaatcttgtagacaacctgaagtg 176  Q
    ||||||||||| || ||||||||| |||| | |||||| ||||| | ||| |||||||| ||| | |||||| ||||||||||||||||| ||||||| |    
T  3300505 ggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtcccaattcctccaatcttgtagacatcctgaagcg 3300604  T
Q  177 gtaattggagaggcatgtgtgatggtctattaggctccttgatttgatcaagagcttcaataagggtgggacc 249  Q
    |||   |||| ||| ||| |||||| || |||||||| |||||||| |||||||| |||| |||||| |||||    
T  3300605 gtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaagggtaggacc 3300677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 43067220 - 43067048
Alignment:
Q  77 ggggcaaaagtcaccaccattccacgtttcaagacaccggtctcaatacgtcccacaggtacaattccaatttctccaatcttgtagacaacctgaagtg 176  Q
    ||||||||||| || ||||||||| |||| | |||||| ||||| | ||| |||||||| ||| |||||||| ||||||||||||||||| | |||||||    
T  43067220 ggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagttccaattcctccaatcttgtagacatcttgaagtg 43067121  T
Q  177 gtaattggagaggcatgtgtgatggtctattaggctccttgatttgatcaagagcttcaataagggtgggacc 249  Q
    ||| | |||| ||| ||| ||| || || |||||||| |||||||| ||||| || |||| |||||| |||||    
T  43067120 gtagtcggaggggcttgtctgaaggcctcttaggctcgttgatttggtcaagggcctcaagaagggttggacc 43067048  T

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Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 43077067 - 43076978
Alignment:
Q  77 ggggcaaaagtcaccaccattccacgtttcaagacaccggtctcaatacgtcccacaggtacaattccaatttctccaatcttgtagaca 166  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||| |||| ||||||||||| |||||||| ||| || ||||||||||    
T  43077067 ggggcaaaagtcaccaccattccaggtttcaagacaccagtctcaacacgtgccacaggtacagttccaattcctctaaacttgtagaca 43076978  T

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Target: chr1; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 43083615 - 43083787
Alignment:
Q  77 ggggcaaaagtcaccaccattccacgtttcaagacaccggtctcaatacgtcccacaggtacaattccaatttctccaatcttgtagacaacctgaagtg 176  Q
    ||||||||||| |  ||||||||| |||| | |||||| ||||| | ||| |||||||| ||| |||||||| ||||||||||||||||| | |||||||    
T  43083615 ggggcaaaagtgataaccattccaggttttatgacaccagtctcgacacgccccacaggcacagttccaattcctccaatcttgtagacatcttgaagtg 43083714  T
Q  177 gtaattggagaggcatgtgtgatggtctattaggctccttgatttgatcaagagcttcaataagggtgggacc 249  Q
    ||| | |||| ||| ||| ||| || || |||||||| |||||||| ||||| || |||| |||||| |||||    
T  43083715 gtagtcggaggggcttgtctgaaggcctcttaggctcgttgatttggtcaagtgcctcaagaagggttggacc 43083787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 251
Target Start/End: Complemental strand, 40035203 - 40035028
Alignment:
Q  76 tggggcaaaagtcaccaccattccacgtttcaagacaccggtctcaatacgtcccacaggtacaattccaatttctccaatcttgtagacaacctgaagt 175  Q
    |||||||||||||||  |||||||  ||||||||||||| |||  || ||| || ||||| || | ||||||| |||||||| |||| |||  ||| | |    
T  40035203 tggggcaaaagtcacagccattcctggtttcaagacaccagtcataacacgaccaacaggcacgactccaattcctccaatcatgtaaacagactggatt 40035104  T
Q  176 ggtaattggagaggcatgtgtgatggtctattaggctccttgatttgatcaagagcttcaataagggtgggacctt 251  Q
    |||||| |||||||| | | |||||| || || ||  | |||||||| || | |||||||| ||||||||||||||    
T  40035103 ggtaatcggagaggcttatctgatggcctcttcggtactttgatttggtcgatagcttcaaaaagggtgggacctt 40035028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 4619460 - 4619632
Alignment:
Q  77 ggggcaaaagtcaccaccattccacgtttcaagacaccggtctcaatacgtcccacaggtacaattccaatttctccaatcttgtagacaacctgaagtg 176  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||| || ||||||||| ||| |||||||| ||||||||||||||||| || ||||||    
T  4619460 ggggcaaaagtcaccatcattccaggtttcaagacaccggtctcaacacatcccacaggcacagttccaattcctccaatcttgtagacatcccgaagtg 4619559  T
Q  177 gtaattggagaggcatgtgtgatggtctattaggctccttgatttgatcaagagcttcaataagggtgggacc 249  Q
    ||||| |||||||| ||| |||||| ||||||||||| |||||||| ||||||||||||| ||||||||||||    
T  4619560 gtaatcggagaggcttgtttgatggcctattaggctcgttgatttggtcaagagcttcaagaagggtgggacc 4619632  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 190
Target Start/End: Original strand, 1846259 - 1846373
Alignment:
Q  76 tggggcaaaagtcaccaccattccacgtttcaagacaccggtctcaatacgtcccacaggtacaattccaatttctccaatcttgtagacaacctgaagt 175  Q
    |||||||||||||| |||||||||| ||||||||| ||| | |||||  ||||||||||| |||||||||||| ||||||||||||||||| | ||||||    
T  1846259 tggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattccaattcctccaatcttgtagacatcttgaagt 1846358  T
Q  176 ggtaattggagaggc 190  Q
    |||||| ||||||||    
T  1846359 ggtaatcggagaggc 1846373  T

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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 249
Target Start/End: Original strand, 4231239 - 4231408
Alignment:
Q  80 gcaaaagtcaccaccattccacgtttcaagacaccggtctcaatacgtcccacaggtacaattccaatttctccaatcttgtagacaacctgaagtggta 179  Q
    ||||||||||||||||||||| |||||| |  ||| ||||||| |||||||||||| ||| |||||||| ||||||||||||||||| ||||||| ||||    
T  4231239 gcaaaagtcaccaccattccaggtttcatggtaccagtctcaacacgtcccacaggaacagttccaattcctccaatcttgtagacatcctgaagaggta 4231338  T
Q  180 attggagaggcatgtgtgatggtctattaggctccttgatttgatcaagagcttcaataagggtgggacc 249  Q
     | |||| ||| ||| |||||| || |||||||| ||||||||||||||||| |||| ||| || |||||    
T  4231339 gtcggaggggcttgtctgatggcctcttaggctcattgatttgatcaagagcctcaagaagtgttggacc 4231408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 19965062 - 19964974
Alignment:
Q  76 tggggcaaaagtcaccaccattccacgtttcaagacaccggtctcaatacgtcccacaggtacaattccaatttctccaatcttgtaga 164  Q
    |||||||||| ||| |||||| ||| || |||||  ||| ||| |||||||||||||||| ||| |||| ||| |||||| ||||||||    
T  19965062 tggggcaaaattcatcaccatcccaggtgtcaagtaaccagtcacaatacgtcccacaggcacatttccgattcctccaaccttgtaga 19964974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 76 - 249
Target Start/End: Original strand, 16348917 - 16349090
Alignment:
Q  76 tggggcaaaagtcaccaccattccacgtttcaagacaccggtctcaatacgtcccacaggtacaattccaatttctccaatcttgtagacaacctgaagt 175  Q
    ||||| ||||||||||||||||||| ||||||||||||| |||   | || |||  |||  | |  ||||||| ||||||||||||||||| ||||||||    
T  16348917 tggggaaaaagtcaccaccattccaggtttcaagacaccagtcctgacacatcctgcagccaaagctccaattcctccaatcttgtagacaccctgaagt 16349016  T
Q  176 ggtaattggagaggcatgtgtgatggtctattaggctccttgatttgatcaagagcttcaataagggtgggacc 249  Q
    |||||| |||||||| ||| |||| | || |||||||| |||||| | ||||||||||||| ||||||||||||    
T  16349017 ggtaatcggagaggcttgtctgatagcctcttaggctcgttgattcggtcaagagcttcaagaagggtgggacc 16349090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 251
Target Start/End: Original strand, 34690616 - 34690791
Alignment:
Q  76 tggggcaaaagtcaccaccattccacgtttcaagacaccggtctcaatacgtcccacaggtacaattccaatttctccaatcttgtagacaacctgaagt 175  Q
    |||||||||||||| |||||||||| ||||||| ||||| ||||||| |||||| ||||||||| ||||||   |||||||||||||||||   ||||||    
T  34690616 tggggcaaaagtcagcaccattccaggtttcaacacaccagtctcaacacgtccgacaggtacagttccaacacctccaatcttgtagacatgttgaagt 34690715  T
Q  176 ggtaattggagaggcatgtgtgatggtctattaggctccttgatttgatcaagagcttcaataagggtgggacctt 251  Q
    |||| |   | |||| ||  ||| || || |||||||| | |||||| ||||||||||||| |||||| |||||||    
T  34690716 ggtagtctcaaaggcttgcctgaaggcctcttaggctcgtcgatttggtcaagagcttcaagaagggtaggacctt 34690791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 251
Target Start/End: Original strand, 34713028 - 34713203
Alignment:
Q  76 tggggcaaaagtcaccaccattccacgtttcaagacaccggtctcaatacgtcccacaggtacaattccaatttctccaatcttgtagacaacctgaagt 175  Q
    |||||||||||||| |||||||||| ||||||| ||||| ||||||| |||||| ||||||||| ||||||   |||||||||||||||||   ||||||    
T  34713028 tggggcaaaagtcagcaccattccaggtttcaacacaccagtctcaacacgtccgacaggtacagttccaacacctccaatcttgtagacatgttgaagt 34713127  T
Q  176 ggtaattggagaggcatgtgtgatggtctattaggctccttgatttgatcaagagcttcaataagggtgggacctt 251  Q
    |||| |   | |||| ||  ||| || || |||||||| | |||||| ||||||||||||| |||||| |||||||    
T  34713128 ggtagtctcaaaggcttgcctgaaggcctcttaggctcgtcgatttggtcaagagcttcaagaagggtaggacctt 34713203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 189
Target Start/End: Original strand, 33860604 - 33860718
Alignment:
Q  76 tggggcaaaagtcaccaccattccacgtttcaagacaccggtctcaatacgtcccacaggtacaattccaatttctccaatc-ttgtagacaacctgaag 174  Q
    |||||||||||||||| |||||||| ||||||||  ||| ||| ||| |||||| ||| | ||| |||| ||| |||||||| ||||||||| | |||||    
T  33860604 tggggcaaaagtcaccgccattccaggtttcaagtgaccagtcacaacacgtcctacatgcacatttccgattcctccaatctttgtagacaccatgaag 33860703  T
Q  175 tggtaattggagagg 189  Q
    ||||| | |||||||    
T  33860704 tggtattcggagagg 33860718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 16231958 - 16232047
Alignment:
Q  77 ggggcaaaagtcaccaccattccacgtttcaagacaccggtctcaatacgtcccacaggtacaattccaatttctccaatcttgtagaca 166  Q
    |||||||||||||  ||||||||  | || || || || ||||||| |||||||||||||||| |||||||  |||||||||||||||||    
T  16231958 ggggcaaaagtcagtaccattccgggctttaataccccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagaca 16232047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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