View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0723_low_2 (Length: 404)
Name: NF0723_low_2
Description: NF0723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0723_low_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 359
Target Start/End: Complemental strand, 5160213 - 5159867
Alignment:
| Q |
16 |
atcaaattgtattgatatgaaagaaaagtaggaatgacacttcctttgtccttgttgaggttgcaatttctaagaatgagtgacttcaattgaaatttag |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5160213 |
atcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttag |
5160114 |
T |
|
| Q |
116 |
gaaaccactttgttttttcagtatcaatatgtgctccaata---ctttgtgatgaaatatatagcacttgaagattggagtgattagccaaaatgctcaa |
212 |
Q |
| |
|
|||||||||||||||||||||| ||||| | | |||||||| ||| ||||||||||||||| || | ||||||||| |||||||||||| ||||||| |
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|
| T |
5160113 |
gaaaccactttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaagtgctcaa |
5160014 |
T |
|
| Q |
213 |
tgaaaatgatcctcccatataatttccatagaaggataagtatctcagggatgtgagattggtagtgaatgatggaaaattgccactaaataaattattg |
312 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||| ||| |||||||||||| || |||| |||||||| || ||||| || | |||||| |
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| T |
5160013 |
tgaaaatgatccttgcatgtaatttccatagaaggataagtatgccagtgatgtgagattgctaatgaaagatggaaactttccactgaacagattatta |
5159914 |
T |
|
| Q |
313 |
ctaagttcaagaactctgagatttgttaagttgcttaaacactcagg |
359 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
5159913 |
ctaagttcaagaactctgaggtttgttaagttgcttaaacactcagg |
5159867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 5195853 - 5195515
Alignment:
| Q |
18 |
caaattgtattgatatgaaagaaaagtaggaatgacacttcctttgtccttgttgaggttgcaatttctaagaatgagtgacttcaattgaaatttagga |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||| |||||||||||||||||||||||| |
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|
| T |
5195853 |
caaattatattgatatgaaagaaaagtaggaatgacacttccttcgtccttgtttaggttgcaatttctaacaataagtgacttcaattgaaatttagga |
5195754 |
T |
|
| Q |
118 |
aaccactttgttttttcagtatcaatatgtgctccaatact---ttgtgatgaaatatatagcacttgaagattggagtgattagccaaaatgctcaatg |
214 |
Q |
| |
|
|||||||||||||||||||| ||||| | | |||||||| | || ||||||||||||||| || | ||||||||| |||||||||||| ||||||||| |
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|
| T |
5195753 |
aaccactttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaagtgctcaatg |
5195654 |
T |
|
| Q |
215 |
aaaatgatcctcccatataatttccatagaaggataagtatctcagggatgtgagattggtagtgaatgatggaaaattgccactaaataaattattgct |
314 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||| ||| |||||||||||| || |||| ||||||||||| ||||| || | |||||| || |
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|
| T |
5195653 |
aaaatgatccttgcatgtaatttccatagaaggataagtatgccagtgatgtgagattgctaatgaaagatggaaaatttccactgaacagattattact |
5195554 |
T |
|
| Q |
315 |
aagttcaagaactctgagatttgttaagttgcttaaaca |
353 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5195553 |
aagttcaagaactctgaggtttgttaagttgcttaaaca |
5195515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 375
Target Start/End: Complemental strand, 5214021 - 5213659
Alignment:
| Q |
13 |
aatatcaaattgtattgatatgaaagaaaagtaggaatgacacttcctttgtccttgttgaggttgcaatttctaagaatgagtgacttcaattgaaatt |
112 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||| |
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|
| T |
5214021 |
aatatcaaactatattgatatgaaagaaaagtaggaatgacacttcctttgtccttgtttaagttgcaatttctaagaatgagtgtcttcaattgaaatt |
5213922 |
T |
|
| Q |
113 |
taggaaaccactttgttttttcagtatcaatatgtgctccaatactttgtgatgaaatatatagcacttgaagattggagtgattagccaaaatgctcaa |
212 |
Q |
| |
|
| || ||||||||||| |||||||| ||||| | ||| ||||| |||||||||||||||||||| || ||||||||||||||||||||| ||||||| |
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|
| T |
5213921 |
tgggtaaccactttgtcttttcagtttcaatgtttgcaccaatgctttgtgatgaaatatatagatgctggagattggagtgattagccaaagtgctcaa |
5213822 |
T |
|
| Q |
213 |
tgaaaatgatcctcccatataatttccatagaaggataagtatctcagggatgtgagattggtagtgaatgatggaaaattgccactaaataaattattg |
312 |
Q |
| |
|
||||||||||||| ||| ||||||||| ||| |||||||||| ||| ||||||||||| || |||| ||||||||||| ||||| || ||||||| | |
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|
| T |
5213821 |
tgaaaatgatccttgcatgtaatttccaaagagggataagtatgccagtgatgtgagattactaatgaaggatggaaaatttccactgaacaaattatag |
5213722 |
T |
|
| Q |
313 |
ctaagttcaagaactctgagatttgttaagttgcttaaacactcagggagttgcccgctaaac |
375 |
Q |
| |
|
|||||||||||||| | || ||||||||||||||||||||||| || |||||| |||||||| |
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|
| T |
5213721 |
ctaagttcaagaacattcaggtttgttaagttgcttaaacactcgggaagttgcgcgctaaac |
5213659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 356
Target Start/End: Complemental strand, 5182464 - 5182118
Alignment:
| Q |
10 |
aagaatatcaaattgtattgatatgaaagaaaagtaggaatgacacttcctttgtccttgttgaggttgcaatttctaagaatgagtgacttcaattgaa |
109 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||| ||||||||||| |
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|
| T |
5182464 |
aagaatatcaaattatattgatatgaaagaaaagtaggaatgacacctcctttctccttgtttaggttgcaatttctaagaatgagtgtcttcaattgaa |
5182365 |
T |
|
| Q |
110 |
atttaggaaaccactttgttttttcagtatcaatatgtgctccaatactttgtgatgaaatatatagcacttgaagattggagtgattagccaaaatgct |
209 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||| | ||||| | ||| | |||||||||||| |||||||| ||||||||||||||| |||| |
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|
| T |
5182364 |
atttgggaaaccactttgtcttttcagtttcaatgagaactccactgttttccggtgaaatatatagatgctgaagatttgagtgattagccaaagtgct |
5182265 |
T |
|
| Q |
210 |
caatgaaaatgatcctcccatataatttccatagaaggataagtatctcagggatgtgagattggtagtgaatgatggaaaattgccactaaataaatta |
309 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||| ||| |||||||||||| || |||| ||||||||||| ||||| || | |||| |
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|
| T |
5182264 |
caatgaaaatgatccttgcatgtaatttccatagaaggataagtatgccagtgatgtgagattgctaatgaaagatggaaaatttccactgaacagatta |
5182165 |
T |
|
| Q |
310 |
ttgctaagttcaagaactctgagatttgttaagttgcttaaacactc |
356 |
Q |
| |
|
|| ||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
5182164 |
ttactaagttcaagaactctaaggtttgttaagttgcttaaacactc |
5182118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 15 - 364
Target Start/End: Original strand, 4842395 - 4842747
Alignment:
| Q |
15 |
tatcaaattgtattgatatgaaagaaaagtaggaatgacacttcctttgtccttgttgaggttgcaatttctaagaatgagtgacttcaattgaaattta |
114 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||| | | |||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4842395 |
tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttcttcatgtttaggttgcaatttctaagaatgagggacttcaattgaaattta |
4842494 |
T |
|
| Q |
115 |
ggaaaccactttgttttttcagtatcaatatgtgctccaatac---tttgtgatgaaatatatagcacttgaagattggagtgattagccaaaatgctca |
211 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| ||||||||| ||| |||||||||||||| |||||||||||||||||||||||| || | | |
|
|
| T |
4842495 |
ggaaaccactttgttttttcagtttcaatgtgtactccaatactgtttttagatgaaatatatagatgctgaagattggagtgattagccaaattgataa |
4842594 |
T |
|
| Q |
212 |
atgaaaatgatcctcccatataatttccatagaaggataagtatctcagggatgtgagattggtagtgaatgatggaaaattgccactaaataaattatt |
311 |
Q |
| |
|
||||||||||||| ||| |||||| |||||| |||||| || ||| ||||||||||||||||||||| ||||||||||| |||| || | ||||| |
|
|
| T |
4842595 |
gtgaaaatgatccttgcatgtaattttcatagagtgataagaatgtcaaggatgtgagattggtagtgaaggatggaaaatttccaccgaacagattatg |
4842694 |
T |
|
| Q |
312 |
gctaagttcaagaactctgagatttgttaagttgcttaaacactcagggagtt |
364 |
Q |
| |
|
|||||| ||||||| |||||| ||||||||||| |||||||||||||| |||| |
|
|
| T |
4842695 |
gctaaggtcaagaattctgaggtttgttaagttacttaaacactcaggaagtt |
4842747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 15 - 364
Target Start/End: Complemental strand, 5173130 - 5172778
Alignment:
| Q |
15 |
tatcaaattgtattgatatgaaagaaaagtaggaatgacacttcctttgtccttgttgaggttgcaatttctaagaatgagtgacttcaattgaaattta |
114 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5173130 |
tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagggacttcaattgaaattta |
5173031 |
T |
|
| Q |
115 |
ggaaaccactttgttttttcagtatcaatatgtgctccaatac---tttgtgatgaaatatatagcacttgaagattggagtgattagccaaaatgctca |
211 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| ||||| | | ||| |||||||||| ||| ||||||||||||||||||||||||||| | | |
|
|
| T |
5173030 |
ggaaaccactttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatgtagatgctgaagattggagtgattagccaaaatgataa |
5172931 |
T |
|
| Q |
212 |
atgaaaatgatcctcccatataatttccatagaaggataagtatctcagggatgtgagattggtagtgaatgatggaaaattgccactaaataaattatt |
311 |
Q |
| |
|
||||||||||||| ||| |||||| |||||| |||||| || ||| |||||||||||| || |||| ||||||||||| ||||| |||| ||||| |
|
|
| T |
5172930 |
gtgaaaatgatccttgcatgtaattttcatagagtgataagaatgtcaaggatgtgagattactaatgaaggatggaaaatttccactgaatagattatg |
5172831 |
T |
|
| Q |
312 |
gctaagttcaagaactctgagatttgttaagttgcttaaacactcagggagtt |
364 |
Q |
| |
|
|||||| ||||||| |||||| ||||||||||| |||||||||||||| |||| |
|
|
| T |
5172830 |
gctaaggtcaagaattctgaggtttgttaagttacttaaacactcaggaagtt |
5172778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 10 - 293
Target Start/End: Original strand, 4856867 - 4857149
Alignment:
| Q |
10 |
aagaatatcaaattgtattgatatgaaagaaaagtaggaatgacacttcctttgtccttgttgaggttgcaatttctaagaatgagtgacttcaattgaa |
109 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4856867 |
aagaataccaaattatattgatatgaaagaaaagtaggaatgacacttccttcgtccatgtttaggttgcaatttctaagaatgagtgtcttcaattgaa |
4856966 |
T |
|
| Q |
110 |
atttaggaaaccactttgttttttcagtatcaatatgtgctccaatactttgtgatgaaatatatagcacttgaagattggagtgattagccaaaatgct |
209 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||| | ||||| | ||| | |||||||||||| |||||||| ||||||||||||||| || | |
|
|
| T |
4856967 |
atttgggaaaccactttgtcttttcagtttcaatgagaactccactgttttccggtgaaatatatagatgctgaagatttgagtgattagccaaagtggt |
4857066 |
T |
|
| Q |
210 |
caatgaaaatgatcctcccatataatttccatagaaggataagtatctcagggatgtgagattggtagtgaatgatggaaaatt |
293 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||| |||| ||||| || |||||||||||||||||||| ||||||||||| |
|
|
| T |
4857067 |
caatgaaaatgatccttgcatgtaatttccatagatggat-agtatgcaagagatgtgagattggtagtgaaggatggaaaatt |
4857149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 7142390 - 7142267
Alignment:
| Q |
18 |
caaattgtattgatatgaaagaaaagtaggaatgacacttcctttgtccttgttgaggttgcaatttctaagaatgagtgacttcaattgaaatttagga |
117 |
Q |
| |
|
|||||| | ||||||||||| |||| ||||||||||| ||||||||||| |||| ||||||||||| ||| || |||| | | ||||||| ||||| |
|
|
| T |
7142390 |
caaattatgttgatatgaaaaaaaactaggaatgacatttcctttgtccatgttttggttgcaatttttaa-cataagtgtatgtagttgaaatctagga |
7142292 |
T |
|
| Q |
118 |
aaccactttgttttttcagtatcaa |
142 |
Q |
| |
|
||||||||||| |||||||| |||| |
|
|
| T |
7142291 |
aaccactttgtattttcagtttcaa |
7142267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 225
Target Start/End: Complemental strand, 5202887 - 5202785
Alignment:
| Q |
123 |
ctttgttttttcagtatcaatatgtgctccaatactttgtgatgaaatatatagcacttgaagattggagtgattagccaaaatgctcaatgaaaatgat |
222 |
Q |
| |
|
||||||||||| ||| ||||| ||| ||||||| |||| ||| ||||||||||| | ||||| || |||||||||||||| |||| | |||||||| | |
|
|
| T |
5202887 |
ctttgttttttaagtttcaatgtgttctccaatgctttctgaggaaatatatagatcctgaagcgtgaagtgattagccaaagtgcttactgaaaatggt |
5202788 |
T |
|
| Q |
223 |
cct |
225 |
Q |
| |
|
||| |
|
|
| T |
5202787 |
cct |
5202785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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