View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0723_low_3 (Length: 365)

Name: NF0723_low_3
Description: NF0723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0723_low_3
NF0723_low_3
[»] chr3 (4 HSPs)
chr3 (10-343)||(9787719-9788052)
chr3 (10-343)||(3589743-3590076)
chr3 (132-211)||(19607508-19607587)
chr3 (76-199)||(4576856-4576979)
[»] chr8 (5 HSPs)
chr8 (10-343)||(44506151-44506484)
chr8 (11-353)||(18176545-18176888)
chr8 (11-343)||(24956232-24956566)
chr8 (102-199)||(29564316-29564413)
chr8 (295-335)||(29564186-29564226)
[»] chr4 (5 HSPs)
chr4 (10-343)||(10012587-10012921)
chr4 (10-343)||(10019728-10020062)
chr4 (18-199)||(14641023-14641204)
chr4 (102-199)||(26110467-26110564)
chr4 (295-335)||(14640893-14640933)
[»] chr1 (2 HSPs)
chr1 (12-135)||(38318572-38318695)
chr1 (11-339)||(32604339-32604669)
[»] chr2 (3 HSPs)
chr2 (11-339)||(21023109-21023439)
chr2 (102-199)||(7230198-7230295)
chr2 (301-335)||(7230068-7230102)
[»] scaffold0005 (2 HSPs)
scaffold0005 (18-199)||(176088-176269)
scaffold0005 (295-335)||(176359-176399)
[»] chr5 (1 HSPs)
chr5 (126-198)||(6790379-6790451)


Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 10 - 343
Target Start/End: Original strand, 9787719 - 9788052
Alignment:
Q  10 catcatcagattcaataatttcatgagccacatctgcaatagtattttttccagtagactctaatggcacacccatagctggtgcccatgcacattgact 109  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  9787719 catcatcagattcaataatttcatgagccacatctgcagtagtattttttctaatagactctaatggcacacccatagctggtgcccatgcacattgact 9787818  T
Q  110 agttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctgtgtaaccaat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9787819 agttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaattttgcatatttcacattctcctgtgtaaccaat 9787918  T
Q  210 aaaaataaataaaattgaggctatctaaattctcctatttattttcaatgaataaaatttaaagttcgtagtactaacccttatcttagcatcccaccaa 309  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9787919 aaaaataaataaaatttaggctatctaaattctcctatttattttcaatgaataaaatttaaagttcgtagtactaacccttatcttagcatcccaccaa 9788018  T
Q  310 gcagaatcagcatcaatatttcctatctgatgat 343  Q
    ||||||||||||||||||||||||||||||||||    
T  9788019 gcagaatcagcatcaatatttcctatctgatgat 9788052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 10 - 343
Target Start/End: Complemental strand, 3590076 - 3589743
Alignment:
Q  10 catcatcagattcaataatttcatgagccacatctgcaatagtattttttccagtagactctaatggcacacccatagctggtgcccatgcacattgact 109  Q
    ||||||||||||||||||||||||| ||||||||||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3590076 catcatcagattcaataatttcatgggccacatctgtggtagtattttttccagcagactctaatggcacacccatagctggtgcccatgcacattgact 3589977  T
Q  110 agttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctgtgtaaccaat 209  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3589976 agttgccacaatctctccaaatatgaattccaattcatctcgaaatttcaaaccttgaaatcgaaatttcgcatatttcacattctcctgtgtaaccaat 3589877  T
Q  210 aaaaataaataaaattgaggctatctaaattctcctatttattttcaatgaataaaatttaaagttcgtagtactaacccttatcttagcatcccaccaa 309  Q
    |||| || |||||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  3589876 aaaattagataaaatttaggctatctaaattctcctacttactttcaatgaataaaaattaaagttcatagtactaacccttatcttagcatcccaccaa 3589777  T
Q  310 gcagaatcagcatcaatatttcctatctgatgat 343  Q
    ||||||||| ||||||||||||||||||||||||    
T  3589776 gcagaatcaacatcaatatttcctatctgatgat 3589743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 19607508 - 19607587
Alignment:
Q  132 atgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctgtgtaaccaataa 211  Q
    |||||||| ||||||||||||||||| || |||||||| |||||||| | |||||| |||||||| ||  ||||||||||    
T  19607508 atgaattctaattcatcacgaaattctaatccttgaaaacgaaattttgaatattttacattctcgtgcataaccaataa 19607587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 199
Target Start/End: Original strand, 4576856 - 4576979
Alignment:
Q  76 gcacacccatagctggtgcccatgcacattgactagttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaa 175  Q
    |||| |||| |||||||| ||||   ||||| || |||||||||||||| |||||||| |||| |||||| || | ||||||||| ||||||  | ||||    
T  4576856 gcacccccaaagctggtgtccattggcattggcttgttgccacaatctccccaaatataaatttcaattcctcgcaaaattccaatccttgactttgaaa 4576955  T
Q  176 tttcgcatatttcacattctcctg 199  Q
     ||  |||| ||||||||||||||    
T  4576956 attttcatagttcacattctcctg 4576979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 10 - 343
Target Start/End: Complemental strand, 44506484 - 44506151
Alignment:
Q  10 catcatcagattcaataatttcatgagccacatctgcaatagtattttttccagtagactctaatggcacacccatagctggtgcccatgcacattgact 109  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44506484 catcatcagattcaataatttcacgagccacatctgcagtagtattttttccagtagactctaatggcacacccatagctggtgcacatgcacattgact 44506385  T
Q  110 agttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctgtgtaaccaat 209  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44506384 agttgccacaatctctccaaatatgaattccaattcatcacaaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcatgtgtaaccaat 44506285  T
Q  210 aaaaataaataaaattgaggctatctaaattctcctatttattttcaatgaataaaatttaaagttcgtagtactaacccttatcttagcatcccaccaa 309  Q
    ||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  44506284 aaaaatagataaaatttaggctatctaaattctcctatttactttcaatgaataaaaattaaagttcatagtactaacccttatcttagcatcccaccaa 44506185  T
Q  310 gcagaatcagcatcaatatttcctatctgatgat 343  Q
    |||||||||||||||||||||||||| |||||||    
T  44506184 gcagaatcagcatcaatatttcctatatgatgat 44506151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 353
Target Start/End: Original strand, 18176545 - 18176888
Alignment:
Q  11 atcatcagattcaataatttcatgagccacatctgcaatagtattttttccagtagactctaatggcacacccatagctggtgcccatgcacattgacta 110  Q
    |||||| || ||||| ||||| || | |||||||| | |||||||||| ||| || | || ||||||||||||| ||| |||| ||||   | ||||||     
T  18176545 atcatcggagtcaattatttcttgtggcacatctgtagtagtatttttgccactacaatcaaatggcacacccaaagcaggtgaccattggcgttgactt 18176644  T
Q  111 gttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctgtgtaaccaata 210  Q
    |||||||     ||||||||||||| || || ||||||| ||||||| ||||||||| | |||||||| |||||||| |||||||||||  |||||||||    
T  18176645 gttgccattgcatctccaaatatgattttcagttcatcatgaaattctaaaccttgatagcgaaattttgcatatttgacattctcctgcataaccaata 18176744  T
Q  211 aaaataaataaaattgaggctatctaaattctcctatt-tattttcaatgaat-aaaatttaaagttcgtagtactaacccttatcttagcatcccacca 308  Q
    | || |||||| ||| || | | | ||||| || ||||  ||||||| || || |||||| ||  ||  || |||| |  ||||||||||||||| ||||    
T  18176745 acaagaaataatattcagacaaaccaaattatcttattcaattttcactggataaaaattcaatatttataatactcagtcttatcttagcatcctacca 18176844  T
Q  309 agcagaatcagcatcaatatttcctatctgatgatgtccatctca 353  Q
     | || |||| ||||||||||||||||||| |||| |||||||||    
T  18176845 tgaagcatcaacatcaatatttcctatctggtgat-tccatctca 18176888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 24956566 - 24956232
Alignment:
Q  11 atcatcagattcaataatttcatgagccacatctgcaatagtattttttccagtagactctaatggcacacccatagctggtgcccatgcacattgacta 110  Q
    ||||||||| ||||| ||||| || | |||||||| | ||||||||||  || |||| || ||||| ||||||| ||| |||| || |   | ||||||     
T  24956566 atcatcagagtcaattatttcttgtggcacatctgtagtagtatttttgtcactagattcaaatggtacacccaaagcaggtgaccgttggcgttgactt 24956467  T
Q  111 gttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctgtgtaaccaata 210  Q
    ||||||||    || |||||||||||||||| ||||||||||||||| ||||||||| | |||||||| |||||||| |||||| ||||  |||| ||||    
T  24956466 gttgccactgcatccccaaatatgaattccagttcatcacgaaattctaaaccttgatagcgaaattttgcatattttacattcccctgcataacgaata 24956367  T
Q  211 aaaataaataaaattgaggctatctaaattctcctatt-tattttcaatgaat-aaaatttaaagttcgtagtactaacccttatcttagcatcccacca 308  Q
    | || ||||||  || || | | | |||||||| ||||  |||||||  | || |||| | ||  || |||  ||| || ||||||||||||||||||||    
T  24956366 acaagaaataatgttcagacaaaccaaattctcttattcaattttcacgggataaaaaatcaatatttgtaacactcactcttatcttagcatcccacca 24956267  T
Q  309 agcagaatcagcatcaatatttcctatctgatgat 343  Q
     | || |||| ||||||||||||||||||| ||||    
T  24956266 tgaagcatcaacatcaatatttcctatctggtgat 24956232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 29564413 - 29564316
Alignment:
Q  102 cattgactagttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctg 199  Q
    |||||||| |||| |||||||||||||||||| |||| |||||| |||||||||| ||| | ||||  | ||||||| ||||||||||||||||||||    
T  29564413 cattgacttgttgtcacaatctctccaaatataaatttcaattcctcacgaaatttcaatctttgactttgaaattttgcatatttcacattctcctg 29564316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 29564226 - 29564186
Alignment:
Q  295 ttagcatcccaccaagcagaatcagcatcaatatttcctat 335  Q
    ||||| ||||||||||||| |||| ||||||||||||||||    
T  29564226 ttagcctcccaccaagcaggatcatcatcaatatttcctat 29564186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 10 - 343
Target Start/End: Original strand, 10012587 - 10012921
Alignment:
Q  10 catcatcagattcaataatttcatgagccacatctgcaatagtattttttcc-agtagactctaatggcacacccatagctggtgcccatgcacattgac 108  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||    
T  10012587 catcgtcagattcaataatttcatgggccacatctgcaatagtatttttttctagtagactctaatggcacacccatagttggtgcccatgcacattgac 10012686  T
Q  109 tagttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctgtgtaaccaa 208  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10012687 tagttgccacaatctctccaaatatgaatttcaattcatcacgaaatttcaaaccttgaaatcgaaatttctcatatttcacattctcctgtgtaaccaa 10012786  T
Q  209 taaaaataaataaaattgaggctatctaaattctcctatttattttcaatgaataaaatttaaagttcgtagtactaacccttatcttagcatcccacca 308  Q
    |||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||| ||||||||||||| |||| |||||    
T  10012787 taaaaatagataaaatttaggctatctaaattctcctatttactttcaatgaataaaaattaaagttcatagtaccaacccttatcttatcatcgcacca 10012886  T
Q  309 agcagaatcagcatcaatatttcctatctgatgat 343  Q
    |||||||||| ||||||||||||||||||||||||    
T  10012887 agcagaatcaacatcaatatttcctatctgatgat 10012921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 10 - 343
Target Start/End: Original strand, 10019728 - 10020062
Alignment:
Q  10 catcatcagattcaataatttcatgagccacatctgcaatagtattttttcc-agtagactctaatggcacacccatagctggtgcccatgcacattgac 108  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||    
T  10019728 catcgtcagattcaataatttcatgggccacatctgcaatagtatttttttctagtagactctaatggcacacccatagttggtgcccatgcacattgac 10019827  T
Q  109 tagttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctgtgtaaccaa 208  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10019828 tagttgccacaatctctccaaatatgaatttcaattcatcacgaaatttcaaaccttgaaatcgaaatttctcatatttcacattctcctgtgtaaccaa 10019927  T
Q  209 taaaaataaataaaattgaggctatctaaattctcctatttattttcaatgaataaaatttaaagttcgtagtactaacccttatcttagcatcccacca 308  Q
    |||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||| ||||||||||||| |||| |||||    
T  10019928 taaaaatagataaaatttaggctatctaaattctcctatttactttcaatgaataaaaattaaagttcatagtaccaacccttatcttatcatcgcacca 10020027  T
Q  309 agcagaatcagcatcaatatttcctatctgatgat 343  Q
    |||||||||| ||||||||||||||||||||||||    
T  10020028 agcagaatcaacatcaatatttcctatctgatgat 10020062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 14641204 - 14641023
Alignment:
Q  18 gattcaataatttcatgagccacatctgcaatagtattttttccagtagactctaatggcacacccatagctggtgcccatgcacattgactagttgcca 117  Q
    ||||||||||||||  | | ||||||  |||||| |||||| ||| |||| ||   |||||| || | |||||||| ||||   |||||||| |||| ||    
T  14641204 gattcaataatttctagtggcacatcatcaatagcatttttgccactagattcatgtggcacccctaaagctggtgtccattggcattgacttgttgtca 14641105  T
Q  118 caatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctg 199  Q
    |||||||||||||||| |||| |||||| |||||||||||||| ||||||  | ||||||| ||||||||||||||||||||    
T  14641104 caatctctccaaatataaatttcaattcctcacgaaattccaatccttgactttgaaattttgcatatttcacattctcctg 14641023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 26110564 - 26110467
Alignment:
Q  102 cattgactagttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctg 199  Q
    |||| ||| |||| |||||||||||||||||| |||| |||||| |||||||||||||| ||||||  | ||||||| ||||||||||||||||||||    
T  26110564 cattaacttgttgtcacaatctctccaaatataaatttcaattcctcacgaaattccaatccttgactttgaaattttgcatatttcacattctcctg 26110467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 14640933 - 14640893
Alignment:
Q  295 ttagcatcccaccaagcagaatcagcatcaatatttcctat 335  Q
    ||||| ||||||||||||| ||||||||||| |||||||||    
T  14640933 ttagcctcccaccaagcaggatcagcatcaacatttcctat 14640893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 38318572 - 38318695
Alignment:
Q  12 tcatcagattcaataatttcatgagccacatctgcaatagtattttttccagtagactctaatggcacacccatagctggtgcccatgcacattgactag 111  Q
    |||| |||||||||||||||||| ||||||| |||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  38318572 tcattagattcaataatttcatgcgccacatatgcagtagtattttttccagtagattctaatgtcacacccatagctggtgcccatgcacattgactag 38318671  T
Q  112 ttgccacaatctctccaaatatga 135  Q
    |||||| |||||| ||||||||||    
T  38318672 ttgccataatctccccaaatatga 38318695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 339
Target Start/End: Complemental strand, 32604669 - 32604339
Alignment:
Q  11 atcatcagattcaataatttcatgagccacatctgcaatagtattttttccagtagactctaatggcacacccatagctggtgcccatgcacattgacta 110  Q
    ||||||||| ||||| ||||| || | ||||| || | |||||||||| ||| |||| |||||||||||||||| ||| |||| ||||     ||||||     
T  32604669 atcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgccattagattctaatggcacacccaaagccggtgtccattggtgttgactt 32604570  T
Q  111 gttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctgtgtaaccaata 210  Q
    ||||||||    || | | |||||||||||||||||||| |||| |||||||||||| | ||||||||   |||||| |||||||||||  |||||||||    
T  32604569 gttgccactgcatccctatatatgaattccaattcatcaagaaactccaaaccttgataacgaaattttaaatattttacattctcctgcataaccaata 32604470  T
Q  211 aaaataaataaaattgaggctatctaaattctcctattta-ttttcaatgaataaaatttaaag-ttcgtagtactaacccttatcttagcatcccacca 308  Q
    | || ||| || ||| | |  | | ||||||| ||||| | ||||||  | |||||| |||||  ||  || |||| |||||||||||||||||||||||    
T  32604469 acaagaaaaaatatttatgaaaacgaaattctactattcaattttcacaggataaaagttaaatatttataatactcacccttatcttagcatcccacca 32604370  T
Q  309 agcagaatcagcatcaatatttcctatctga 339  Q
     | || |||||||||||||||||||||||||    
T  32604369 tgaagcatcagcatcaatatttcctatctga 32604339  T

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Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 339
Target Start/End: Original strand, 21023109 - 21023439
Alignment:
Q  11 atcatcagattcaataatttcatgagccacatctgcaatagtattttttccagtagactctaatggcacacccatagctggtgcccatgcacattgacta 110  Q
    ||||||||| ||||| ||||| || | ||||| || | |||||||||| ||| |||| |||||||||||||||| ||| |||| ||||     ||||||     
T  21023109 atcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgccattagattctaatggcacacccaaagccggtgtccattggtgttgactt 21023208  T
Q  111 gttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctgtgtaaccaata 210  Q
    ||||||||    || | | |||||||||||||||||||| |||| |||||||||||| | ||||||||   |||||| |||||||||||  |||||||||    
T  21023209 gttgccactgcatccctatatatgaattccaattcatcaagaaactccaaaccttgataacgaaattttaaatattttacattctcctgcataaccaata 21023308  T
Q  211 aaaataaataaaattgaggctatctaaattctcctatt-tattttcaatgaataaaatttaaa-gttcgtagtactaacccttatcttagcatcccacca 308  Q
    | || ||| || ||| | |  | | ||||||| |||||  |||||||  |||||||| |||||  ||  || |||| | ||||||||||||||||||| |    
T  21023309 acaagaaaaaatatttatgaaaacgaaattctactattcaattttcacagaataaaaattaaatatttataatactcagccttatcttagcatcccacga 21023408  T
Q  309 agcagaatcagcatcaatatttcctatctga 339  Q
     | |  |||||||||||||||||||||||||    
T  21023409 tgaaacatcagcatcaatatttcctatctga 21023439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 7230295 - 7230198
Alignment:
Q  102 cattgactagttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctg 199  Q
    |||||||| |||| |||||||||||||||||| |||| |||||| |||||||||| ||| ||||||  | ||||||| ||||||||||||||||||||    
T  7230295 cattgacttgttgtcacaatctctccaaatataaatttcaattcctcacgaaatttcaatccttgactttgaaattttgcatatttcacattctcctg 7230198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 335
Target Start/End: Complemental strand, 7230102 - 7230068
Alignment:
Q  301 tcccaccaagcagaatcagcatcaatatttcctat 335  Q
    ||||||||||||| |||||||||||||||||||||    
T  7230102 tcccaccaagcaggatcagcatcaatatttcctat 7230068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 176088 - 176269
Alignment:
Q  18 gattcaataatttcatgagccacatctgcaatagtattttttccagtagactctaatggcacacccatagctggtgcccatgcacattgactagttgcca 117  Q
    ||||||||||||||  | | ||||||  |||||| |||||| ||| |||| ||   |||||| || | |||||||| ||||   |||||||| |||| ||    
T  176088 gattcaataatttctagtggcacatcatcaatagcatttttgccactagattcatgtggcacccctaaagctggtgtccattggcattgacttgttgtca 176187  T
Q  118 caatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctg 199  Q
    |||||||||||||||| |||| |||||| |||||||||||||| ||||||  | ||||||| ||||||||||||||||||||    
T  176188 caatctctccaaatataaatttcaattcctcacgaaattccaatccttgactttgaaattttgcatatttcacattctcctg 176269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 176359 - 176399
Alignment:
Q  295 ttagcatcccaccaagcagaatcagcatcaatatttcctat 335  Q
    ||||| ||||||||||||| ||||||||||| |||||||||    
T  176359 ttagcctcccaccaagcaggatcagcatcaacatttcctat 176399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 6790451 - 6790379
Alignment:
Q  126 ccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcct 198  Q
    |||||||||  |||||| |||||||||||||| || |||||| |||||||| | ||| ||||  |||||||||    
T  6790451 ccaaatatgtgttccaactcatcacgaaattctaatccttgatatcgaaatcttgcaaattttgcattctcct 6790379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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