View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0723_low_4 (Length: 362)
Name: NF0723_low_4
Description: NF0723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0723_low_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 25 - 362
Target Start/End: Complemental strand, 40783458 - 40783121
Alignment:
| Q |
25 |
catcaggaccattaaacataaccaaagtcctagaaaaggcaggacaattcacaacattcatcaagctactaaaagcaacacaagtatccgaccgaatcaa |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40783458 |
catcaggaccattaaacataaccaaagtcctagaaaaggcaggacaattcacaacattcatcaagctactaaaagcaacacaagtatccgaccgaatcaa |
40783359 |
T |
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| Q |
125 |
ctcacaactcaacaactcaaatcaaggcctaacaatttttgcaccaacagataatgccttctcgagtctaaaatcaggaacactaaactcaatcagcaca |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40783358 |
ctcacaactcaacaactcaaatcaaggcctaacaatttttgcaccaacagataatgccttctcgagtctaaaatcaggaacactaaactcaatcagcaca |
40783259 |
T |
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| Q |
225 |
caaaaccaacttcaacttctacagtttcatattctaccaacactttacacaatatcacagtttcaaactgcaagtaaccctctacacacacaagctggaa |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40783258 |
caaaaccaacttcaacttctacagtttcatattctaccaacactttacacaatatcacagtttcaaactgcaagtaaccctctacacacacaagctggaa |
40783159 |
T |
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| Q |
325 |
acagtgatgatggagagtatcctcttaatgttactact |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
40783158 |
acagtgatgatggagagtatcctcttaatgttactact |
40783121 |
T |
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