View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0723_low_5 (Length: 318)

Name: NF0723_low_5
Description: NF0723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0723_low_5
NF0723_low_5
[»] chr6 (12 HSPs)
chr6 (146-277)||(27851213-27851344)
chr6 (146-269)||(20734157-20734279)
chr6 (146-269)||(2201139-2201261)
chr6 (146-269)||(22420987-22421109)
chr6 (146-240)||(34296979-34297072)
chr6 (148-277)||(25956569-25956697)
chr6 (157-216)||(19399830-19399889)
chr6 (157-216)||(18927896-18927954)
chr6 (147-216)||(25956715-25956783)
chr6 (148-208)||(31630622-31630681)
chr6 (130-165)||(27851338-27851373)
chr6 (167-214)||(27851129-27851176)
[»] chr8 (11 HSPs)
chr8 (133-277)||(41680819-41680962)
chr8 (147-277)||(21579917-21580046)
chr8 (143-269)||(32807285-32807410)
chr8 (147-277)||(29763579-29763707)
chr8 (146-244)||(42560237-42560334)
chr8 (148-274)||(39833887-39834013)
chr8 (159-208)||(18760615-18760664)
chr8 (148-216)||(27472391-27472458)
chr8 (148-216)||(38550086-38550153)
chr8 (147-216)||(1327119-1327187)
chr8 (157-216)||(3273212-3273270)
[»] scaffold1351 (1 HSPs)
scaffold1351 (146-277)||(1578-1708)
[»] chr7 (16 HSPs)
chr7 (146-269)||(9320439-9320561)
chr7 (157-277)||(30820977-30821096)
chr7 (157-277)||(38480249-38480368)
chr7 (146-269)||(11092757-11092879)
chr7 (146-252)||(11085036-11085141)
chr7 (157-277)||(36685971-36686090)
chr7 (146-244)||(15213744-15213841)
chr7 (148-252)||(15439322-15439425)
chr7 (147-216)||(8468386-8468454)
chr7 (147-216)||(14270138-14270206)
chr7 (148-216)||(45847735-45847802)
chr7 (218-277)||(17232666-17232725)
chr7 (147-208)||(17232588-17232648)
chr7 (198-277)||(9389705-9389783)
chr7 (218-271)||(8468471-8468524)
chr7 (157-216)||(37727648-37727707)
[»] scaffold0737 (1 HSPs)
scaffold0737 (147-269)||(6389-6510)
[»] chr5 (14 HSPs)
chr5 (147-277)||(12122232-12122361)
chr5 (157-277)||(21557766-21557885)
chr5 (146-272)||(24212385-24212510)
chr5 (157-277)||(21555100-21555219)
chr5 (146-246)||(35852666-35852765)
chr5 (146-240)||(36460219-36460312)
chr5 (148-277)||(5889124-5889252)
chr5 (157-277)||(31455089-31455211)
chr5 (157-277)||(31455702-31455824)
chr5 (160-277)||(30615768-30615883)
chr5 (176-271)||(17875232-17875326)
chr5 (157-216)||(29915177-29915235)
chr5 (147-216)||(5889269-5889337)
chr5 (217-277)||(21741559-21741619)
[»] chr3 (16 HSPs)
chr3 (157-277)||(31415416-31415535)
chr3 (146-255)||(11912955-11913063)
chr3 (157-277)||(31224675-31224794)
chr3 (146-251)||(6808175-6808279)
chr3 (146-277)||(15447710-15447837)
chr3 (147-216)||(49969963-49970032)
chr3 (173-272)||(12269620-12269718)
chr3 (218-277)||(18439864-18439923)
chr3 (167-216)||(20630210-20630259)
chr3 (198-277)||(1465419-1465497)
chr3 (157-216)||(1988953-1989012)
chr3 (157-244)||(49389772-49389859)
chr3 (147-216)||(18439941-18440009)
chr3 (174-216)||(30175304-30175346)
chr3 (178-216)||(40812058-40812096)
chr3 (147-216)||(12269529-12269597)
[»] chr2 (10 HSPs)
chr2 (146-277)||(24865480-24865610)
chr2 (146-277)||(22501001-22501131)
chr2 (146-277)||(22508935-22509065)
chr2 (146-277)||(7672268-7672392)
chr2 (146-217)||(2524439-2524510)
chr2 (157-216)||(6576446-6576505)
chr2 (157-216)||(24436263-24436321)
chr2 (176-244)||(22501128-22501195)
chr2 (176-244)||(22509062-22509129)
chr2 (176-216)||(24883673-24883713)
[»] chr4 (14 HSPs)
chr4 (147-277)||(33186114-33186243)
chr4 (146-252)||(15880734-15880839)
chr4 (148-277)||(13844584-13844712)
chr4 (157-272)||(46642884-46642997)
chr4 (147-216)||(52873251-52873319)
chr4 (148-208)||(362213-362272)
chr4 (157-216)||(9923369-9923427)
chr4 (157-216)||(11479432-11479490)
chr4 (157-196)||(14185252-14185291)
chr4 (157-216)||(35812211-35812269)
chr4 (167-216)||(13844498-13844547)
chr4 (198-267)||(15190360-15190428)
chr4 (147-216)||(46642793-46642861)
chr4 (198-277)||(15099383-15099461)
[»] scaffold0599 (2 HSPs)
scaffold0599 (146-255)||(4649-4757)
scaffold0599 (146-255)||(231-339)
[»] scaffold0071 (1 HSPs)
scaffold0071 (146-277)||(14352-14482)
[»] chr1 (13 HSPs)
chr1 (146-269)||(51274298-51274420)
chr1 (133-228)||(51326904-51326998)
chr1 (146-259)||(12328565-12328677)
chr1 (146-217)||(8885468-8885539)
chr1 (148-277)||(28194397-28194525)
chr1 (148-277)||(43697418-43697546)
chr1 (198-277)||(20636883-20636961)
chr1 (147-216)||(28194543-28194611)
chr1 (147-216)||(43543069-43543137)
chr1 (198-271)||(49261380-49261452)
chr1 (178-216)||(48301083-48301121)
chr1 (147-216)||(43697332-43697400)
chr1 (148-216)||(46382652-46382717)
[»] scaffold0395 (1 HSPs)
scaffold0395 (158-277)||(10907-11025)
[»] scaffold0815 (1 HSPs)
scaffold0815 (161-277)||(496-611)
[»] scaffold0116 (3 HSPs)
scaffold0116 (148-277)||(43732-43860)
scaffold0116 (148-277)||(47652-47780)
scaffold0116 (147-216)||(43878-43946)
[»] scaffold0434 (1 HSPs)
scaffold0434 (144-216)||(6767-6839)
[»] scaffold0061 (2 HSPs)
scaffold0061 (148-208)||(15439-15499)
scaffold0061 (148-208)||(24497-24557)
[»] scaffold0009 (2 HSPs)
scaffold0009 (218-270)||(85300-85352)
scaffold0009 (147-216)||(85207-85275)
[»] scaffold0100 (1 HSPs)
scaffold0100 (147-216)||(36142-36210)
[»] scaffold0080 (1 HSPs)
scaffold0080 (157-217)||(59327-59386)
[»] scaffold0810 (1 HSPs)
scaffold0810 (157-216)||(3004-3062)
[»] scaffold0004 (1 HSPs)
scaffold0004 (147-216)||(362964-363032)
[»] scaffold0001 (1 HSPs)
scaffold0001 (157-216)||(76962-77019)
[»] scaffold1137 (1 HSPs)
scaffold1137 (198-277)||(2300-2378)
[»] scaffold0802 (1 HSPs)
scaffold0802 (157-216)||(5478-5536)
[»] scaffold0335 (1 HSPs)
scaffold0335 (157-216)||(877-935)
[»] scaffold0513 (1 HSPs)
scaffold0513 (147-216)||(10963-11031)
[»] scaffold0371 (1 HSPs)
scaffold0371 (157-216)||(3136-3194)


Alignment Details
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 146 - 277
Target Start/End: Complemental strand, 27851344 - 27851213
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 245  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27851344 gatgatttaccttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaagattattattgatgg 27851245  T
Q  246 ttacttgatgtgtatgtttaaatgatgatgtc 277  Q
    ||||||| ||||||||||||||||||| ||||    
T  27851244 ttacttgttgtgtatgtttaaatgatgttgtc 27851213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 146 - 269
Target Start/End: Original strand, 20734157 - 20734279
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 245  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  20734157 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattattgatgg 20734255  T
Q  246 ttacttgatgtgtatgtttaaatg 269  Q
    | ||||| ||  ||||||||||||    
T  20734256 tgacttgctgcatatgtttaaatg 20734279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 146 - 269
Target Start/End: Complemental strand, 2201261 - 2201139
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 245  Q
    |||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  2201261 gatgatttactttgatgattaaatatgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattattgatgg 2201163  T
Q  246 ttacttgatgtgtatgtttaaatg 269  Q
    | ||||| ||  ||||| ||||||    
T  2201162 tgacttgctgcatatgtctaaatg 2201139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 146 - 269
Target Start/End: Complemental strand, 22421109 - 22420987
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 245  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||| |    
T  22421109 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattattgatag 22421011  T
Q  246 ttacttgatgtgtatgtttaaatg 269  Q
    | ||||| ||  ||||| ||||||    
T  22421010 tgacttgttgcatatgtctaaatg 22420987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 34296979 - 34297072
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattatt 240  Q
    |||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||    
T  34296979 gatgatttactttgatgattagatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattatt 34297072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 148 - 277
Target Start/End: Original strand, 25956569 - 25956697
Alignment:
Q  148 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggtt 247  Q
    |||||||  |||||||||||||||||||| || |||||| ||||||||  ||||||||| | ||| || | |||||||||||| ||||||||||||||||    
T  25956569 tgatttacgttgatgattaaatgtgaaaagatctatataatgtgaaagttgttgatatggagttgcaaat-gttatatatgaagattattattgatggtt 25956667  T
Q  248 acttgatgtgtatgtttaaatgatgatgtc 277  Q
    ||||| ||| ||||||||||||||| ||||    
T  25956668 acttgctgtatatgtttaaatgatgttgtc 25956697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 19399889 - 19399830
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  19399889 ttgatgattaaatgtgaaaatatttatatattgtgaaagatgttgatatgaagttgtaat 19399830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 18927954 - 18927896
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    |||||||||||||||||||  ||||||||||||||||||| ||||||||||| |||||||    
T  18927954 ttgatgattaaatgtgaaag-atttatatattgtgaaagatgttgatatgaagttgtaat 18927896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 25956715 - 25956783
Alignment:
Q  147 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| | ||||||||| |||||||    
T  25956715 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgctgatatgaagttgtaat 25956783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 31630622 - 31630681
Alignment:
Q  148 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaa 208  Q
    |||||||  ||||||||||| ||||| |||||||||||||||||||||| |||||||||||    
T  31630622 tgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaa 31630681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 165
Target Start/End: Complemental strand, 27851373 - 27851338
Alignment:
Q  130 cagagaggatgaataagatgatttatattgatgatt 165  Q
    ||||||||||||||||||||||||||||||||||||    
T  27851373 cagagaggatgaataagatgatttatattgatgatt 27851338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 27851176 - 27851129
Alignment:
Q  167 aatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgta 214  Q
    ||||||| |||||||||||||||||||||| | ||||||||| |||||    
T  27851176 aatgtgagaatatttatatattgtgaaagatgctgatatgaagttgta 27851129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 133 - 277
Target Start/End: Original strand, 41680819 - 41680962
Alignment:
Q  133 agaggatgaataagatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaa 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||| |||||||||||||  |    
T  41680819 agaggatgaataagatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagatattgatatcaaattgtaa-ttgttatatatgatga 41680917  T
Q  233 ttattattgatggttacttgatgtgtatgtttaaatgatgatgtc 277  Q
    |||||||||||||| ||||| ||  |||||||||||| |||||||    
T  41680918 ttattattgatggtgacttgctgcatatgtttaaatggtgatgtc 41680962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 147 - 277
Target Start/End: Original strand, 21579917 - 21580046
Alignment:
Q  147 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggt 246  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||    
T  21579917 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa-ttgttatatatgataattattattgatggt 21580015  T
Q  247 tacttgatgtgtatgtttaaatgatgatgtc 277  Q
     ||||| ||  ||||||||||||||| ||||    
T  21580016 gacttgctgcatatgtttaaatgatgttgtc 21580046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 143 - 269
Target Start/End: Complemental strand, 32807410 - 32807285
Alignment:
Q  143 taagatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattga 242  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||    
T  32807410 taagatgattaatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattattga 32807312  T
Q  243 tggttacttgatgtgtatgtttaaatg 269  Q
    |||| ||||| ||  ||||| ||||||    
T  32807311 tggtgacttgctgcatatgtctaaatg 32807285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 147 - 277
Target Start/End: Original strand, 29763579 - 29763707
Alignment:
Q  147 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggt 246  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||  |||||||| ||||||    
T  29763579 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa-ttgttatatatgatgattattatcgatggt 29763677  T
Q  247 tacttgatgtgtatgtttaaatgatgatgtc 277  Q
     | ||| ||  ||||||||||||||||||||    
T  29763678 ga-ttgctgcatatgtttaaatgatgatgtc 29763707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 146 - 244
Target Start/End: Original strand, 42560237 - 42560334
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatg 244  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||  |||||||||||||    
T  42560237 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaatacgttgatatgaaattgtaa-ttgttatatatgatgattattattgatg 42560334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 148 - 274
Target Start/End: Complemental strand, 39834013 - 39833887
Alignment:
Q  148 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggtt 247  Q
    |||||||  |||||||||||||||||||| || ||||||  ||||| |  ||||||||||| ||| || | |||||||||||| ||||||||||||||||    
T  39834013 tgatttacgttgatgattaaatgtgaaaagatctatataacgtgaatgttgttgatatgaagttgcaaatggttatatatgaagattattattgatggtt 39833914  T
Q  248 acttgatgtgtatgtttaaatgatgat 274  Q
    ||| | ||| |||||||||||||||||    
T  39833913 actcgctgtatatgtttaaatgatgat 39833887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 18760664 - 18760615
Alignment:
Q  159 gatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaa 208  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  18760664 gatgattaaatgtgaaaagatttatatattgtgaaagatgttgatatgaa 18760615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 27472391 - 27472458
Alignment:
Q  148 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    |||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  27472391 tgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 27472458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 38550086 - 38550153
Alignment:
Q  148 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    |||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  38550086 tgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 38550153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 1327119 - 1327187
Alignment:
Q  147 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||||  ||||||||||| ||||| ||||||||||||||||||| || ||||||||||| |||||||    
T  1327119 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaacgatgttgatatgaagttgtaat 1327187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 3273270 - 3273212
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    |||||||||||||||||||  ||||||||||||||||| | |||| |||||| |||||||    
T  3273270 ttgatgattaaatgtgaaag-atttatatattgtgaaaaatgttggtatgaagttgtaat 3273212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1351 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold1351
Description:

Target: scaffold1351; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 146 - 277
Target Start/End: Complemental strand, 1708 - 1578
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 245  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||  ||||||||||||||    
T  1708 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa-ttgttatataagatgattattattgatgg 1610  T
Q  246 ttacttgatgtgtatgtttaaatgatgatgtc 277  Q
    | ||||||||  ||||||||||||||| ||||    
T  1609 tgacttgatgcatatgtttaaatgatgttgtc 1578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 7e-40; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 146 - 269
Target Start/End: Original strand, 9320439 - 9320561
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 245  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  9320439 gatgatttattttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattattgatgg 9320537  T
Q  246 ttacttgatgtgtatgtttaaatg 269  Q
    | ||||| ||  ||||| ||||||    
T  9320538 tgacttgttgcatatgtctaaatg 9320561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 157 - 277
Target Start/End: Original strand, 30820977 - 30821096
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgt 256  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||  ||||||||||||||| ||||| ||     
T  30820977 ttgatgattaaatgtgaaaatatttatatattgtgaaatacgttgatatgaagttgtaa-ttgttatatatgatgattattattgatggtaacttgctgc 30821075  T
Q  257 gtatgtttaaatgatgatgtc 277  Q
     ||||||||||||||| ||||    
T  30821076 atatgtttaaatgatgttgtc 30821096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 157 - 277
Target Start/End: Complemental strand, 38480368 - 38480249
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgt 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||  ||||||||||||||| ||||| ||     
T  38480368 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa-ttgttatatatgatgattattattgatggtgacttgctgc 38480270  T
Q  257 gtatgtttaaatgatgatgtc 277  Q
     ||| ||||||||||| ||||    
T  38480269 atatatttaaatgatgttgtc 38480249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 146 - 269
Target Start/End: Complemental strand, 11092879 - 11092757
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 245  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||  ||||||||||||||    
T  11092879 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagatgttgatatgaaattgtaa-ttgttatatatgatgattattattgatgg 11092781  T
Q  246 ttacttgatgtgtatgtttaaatg 269  Q
    | ||||| ||  || |||||||||    
T  11092780 tgacttgttgcatacgtttaaatg 11092757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 146 - 252
Target Start/End: Complemental strand, 11085141 - 11085036
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 245  Q
    |||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  11085141 gatgatttactttgatgattaaatgtgaaactatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattattgatgg 11085043  T
Q  246 ttacttg 252  Q
    | |||||    
T  11085042 tgacttg 11085036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 157 - 277
Target Start/End: Original strand, 36685971 - 36686090
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgt 256  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| |||||||||||||  ||||||||||||||| ||||| ||     
T  36685971 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgctgatatgaagttttaa-ttgttatatatgatgattattattgatggtgacttgctgc 36686069  T
Q  257 gtatgtttaaatgatgatgtc 277  Q
     ||||||||||||||| ||||    
T  36686070 atatgtttaaatgatgttgtc 36686090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 146 - 244
Target Start/End: Complemental strand, 15213841 - 15213744
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatg 244  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||  |||||||||||||    
T  15213841 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacattgatatgaaattgtaa-ttgttatatatgatgattattattgatg 15213744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 252
Target Start/End: Complemental strand, 15439425 - 15439322
Alignment:
Q  148 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggtt 247  Q
    |||||||  |||||||||||||||||||| || ||||   ||||||||  ||||||||||| |||||||| |||||||||||| ||||||||||||||||    
T  15439425 tgatttacgttgatgattaaatgtgaaaagatctatactatgtgaaagttgttgatatgaagttgtaatt-gttatatatgaagattattattgatggtt 15439327  T
Q  248 acttg 252  Q
    |||||    
T  15439326 acttg 15439322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 8468454 - 8468386
Alignment:
Q  147 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  8468454 atgatttactttgatgattaa-tgtgataatatttatatattgtgaaagatgttgatatgaagttgtaat 8468386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 14270138 - 14270206
Alignment:
Q  147 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  14270138 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 14270206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 45847735 - 45847802
Alignment:
Q  148 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    |||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  45847735 tgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 45847802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 17232725 - 17232666
Alignment:
Q  218 tgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 277  Q
    ||||| ||||||| ||||||| ||||||||||||| ||| ||||||||||||||||||||    
T  17232725 tgttacatatgaagattattaatgatggttacttgttgtatatgtttaaatgatgatgtc 17232666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 17232648 - 17232588
Alignment:
Q  147 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaa 208  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| |||||||||||    
T  17232648 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaa 17232588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 9389705 - 9389783
Alignment:
Q  198 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 277  Q
    ||||||||||| ||| |||| | |||| ||||| ||||||| ||||||||||||| ||| ||||||||||||||| ||||    
T  9389705 gttgatatgaagttgaaatt-gatatacatgaagattattaatgatggttacttgctgtatatgtttaaatgatgttgtc 9389783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 8468524 - 8468471
Alignment:
Q  218 tgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgat 271  Q
    ||||| ||||||| ||||||| ||||||||||||| ||| ||||||||||||||    
T  8468524 tgttacatatgaagattattaatgatggttacttgttgtatatgtttaaatgat 8468471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 37727648 - 37727707
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    |||||||||||||||||||| || |||||| ||||||||  || |||||||| |||||||    
T  37727648 ttgatgattaaatgtgaaaagatctatataatgtgaaagttgtagatatgaagttgtaat 37727707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 147 - 269
Target Start/End: Original strand, 6389 - 6510
Alignment:
Q  147 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggt 246  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||    
T  6389 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattattgatggt 6487  T
Q  247 tacttgatgtgtatgtttaaatg 269  Q
     ||||| ||  ||||||||||||    
T  6488 gacttgctgcatatgtttaaatg 6510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 147 - 277
Target Start/End: Original strand, 12122232 - 12122361
Alignment:
Q  147 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggt 246  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||  |||||||||||||||    
T  12122232 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa-ttgttatatatgatgattattattgatggt 12122330  T
Q  247 tacttgatgtgtatgtttaaatgatgatgtc 277  Q
     |||||  |  ||||||||||||||||||||    
T  12122331 gacttgcggcatatgtttaaatgatgatgtc 12122361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 157 - 277
Target Start/End: Original strand, 21557766 - 21557885
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgt 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||  |||||||||||| || ||||| ||     
T  21557766 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa-ttgttatatatgatgattattattgatagtgacttgctgc 21557864  T
Q  257 gtatgtttaaatgatgatgtc 277  Q
     ||||||||||||||| ||||    
T  21557865 atatgtttaaatgatgttgtc 21557885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 146 - 272
Target Start/End: Complemental strand, 24212510 - 24212385
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 245  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||  |||| |||||||||    
T  24212510 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa-ttgttatatatgatgattaatattgatgg 24212412  T
Q  246 ttacttgatgtgtatgtttaaatgatg 272  Q
    | ||||| ||  ||||| |||||||||    
T  24212411 tgacttgctgcatatgtctaaatgatg 24212385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 157 - 277
Target Start/End: Original strand, 21555100 - 21555219
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgt 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || || |||||| |||||||||||||  ||||||||||||||| ||||| ||     
T  21555100 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgacataaagttgtaa-ttgttatatatgatgattattattgatggtgacttgctgc 21555198  T
Q  257 gtatgtttaaatgatgatgtc 277  Q
     ||||||||||||||| ||||    
T  21555199 atatgtttaaatgatgttgtc 21555219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 246
Target Start/End: Complemental strand, 35852765 - 35852666
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 245  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||  ||||||||||||||    
T  35852765 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatacgatgattattattgatgg 35852667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 146 - 240
Target Start/End: Complemental strand, 36460312 - 36460219
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattatt 240  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||    
T  36460312 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattatt 36460219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 148 - 277
Target Start/End: Original strand, 5889124 - 5889252
Alignment:
Q  148 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggtt 247  Q
    |||||||  |||||||||||||||||||| || |||||| ||||||||  ||||||||| | ||| |||| |||||| ||||| ||||||||||||||||    
T  5889124 tgatttacgttgatgattaaatgtgaaaagatctatataatgtgaaagttgttgatatgtagttgcaatt-gttatacatgaagattattattgatggtt 5889222  T
Q  248 acttgatgtgtatgtttaaatgatgatgtc 277  Q
    ||||| ||| ||||||||||||||| ||||    
T  5889223 acttgctgtatatgtttaaatgatgttgtc 5889252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 157 - 277
Target Start/End: Complemental strand, 31455211 - 31455089
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaa---attattattgatggttacttga 253  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| || |||||| | |||||| |||| |   ||||||||||||||| ||||||    
T  31455211 ttgatgattaaatgtgaaaatatttatatattgtgaaaaacgttgatattaagttgtaa-tcgttataaatgatattgattattattgatggtgacttga 31455113  T
Q  254 tgtgtatgtttaaatgatgatgtc 277  Q
    ||  ||||||||||||||| ||||    
T  31455112 tgcatatgtttaaatgatgttgtc 31455089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 157 - 277
Target Start/End: Complemental strand, 31455824 - 31455702
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaa---attattattgatggttacttga 253  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| | |||||| |||| |   ||||||||||||||| |||||     
T  31455824 ttgatgattaaatgtgaaaatatttatatattgtgaaaaacgttgatatgaagttgtaa-tcgttataaatgatattgattattattgatggtgacttgc 31455726  T
Q  254 tgtgtatgtttaaatgatgatgtc 277  Q
    ||  ||||||||||||||| ||||    
T  31455725 tgcatatgtttaaatgatgttgtc 31455702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 160 - 277
Target Start/End: Complemental strand, 30615883 - 30615768
Alignment:
Q  160 atgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgta 259  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||  |||  ||||||| ||||||| ||||| ||  ||    
T  30615883 atgattaaatgtgaaaatatt-atatattgtgaaagacgttgatatgaagttgtaa-ttgttataattgatgattattaatgatggtgacttgctgcata 30615786  T
Q  260 tgtttaaatgatgatgtc 277  Q
    |||||||| |||||||||    
T  30615785 tgtttaaacgatgatgtc 30615768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 176 - 271
Target Start/End: Complemental strand, 17875326 - 17875232
Alignment:
Q  176 atatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgat 271  Q
    ||||||||||| ||  ||||||||||||||||| || ||||| |||||||||||  ||||||||||||||| ||||| ||  ||||||||||||||    
T  17875326 atatttatataatgataaagacgttgatatgaagttctaatt-gttatatatgatgattattattgatggtgacttgctgcatatgtttaaatgat 17875232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 29915177 - 29915235
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  29915177 ttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 29915235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 5889269 - 5889337
Alignment:
Q  147 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| | ||||||||| |||||||    
T  5889269 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgctgatatgaagttgtaat 5889337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 21741559 - 21741619
Alignment:
Q  217 ttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 277  Q
    |||||||| ||||| ||||||| ||||||||||||| ||| ||||||||||||||| ||||    
T  21741559 ttgttatacatgaagattattaatgatggttacttgttgtatatgtttaaatgatgttgtc 21741619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 157 - 277
Target Start/End: Complemental strand, 31415535 - 31415416
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgt 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||  ||||||||||||||| ||||| ||     
T  31415535 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa-ttgttatatatgatgattattattgatggtgacttgctgc 31415437  T
Q  257 gtatgtttaaatgatgatgtc 277  Q
     ||||||||||||||| ||||    
T  31415436 atatgtttaaatgatgttgtc 31415416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 146 - 255
Target Start/End: Complemental strand, 11913063 - 11912955
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 245  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||     
T  11913063 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgattattattattgatgt 11912965  T
Q  246 ttacttgatg 255  Q
    | ||||||||    
T  11912964 tgacttgatg 11912955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 157 - 277
Target Start/End: Original strand, 31224675 - 31224794
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgt 256  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||  ||||||||||||||| ||||| ||     
T  31224675 ttgatgattaaatgtgaaaatatttatataatgtgaaagacgttgatatgaagttgtaa-ttgttatatatgatgattattattgatggtgacttgctgc 31224773  T
Q  257 gtatgtttaaatgatgatgtc 277  Q
     ||||||||||||||| ||||    
T  31224774 atatgtttaaatgatgttgtc 31224794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 146 - 251
Target Start/End: Complemental strand, 6808279 - 6808175
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 245  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |  ||||||||||||||    
T  6808279 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatataatgattattattgatgg 6808181  T
Q  246 ttactt 251  Q
    | ||||    
T  6808180 tgactt 6808175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 15447710 - 15447837
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 245  Q
    |||||||||  |||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||| ||||||||||||   ||||||||||||||    
T  15447710 gatgatttactttgatgattaaatgtgaaaatattcatataatgtgaaagacgttgatatgaagttgtaa-ttgttatatatg---attattattgatgg 15447805  T
Q  246 ttacttgatgtgtatgtttaaatgatgatgtc 277  Q
    | ||||||||  ||||||||||||||| ||||    
T  15447806 tgacttgatgcatatgtttaaatgatgttgtc 15447837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 49969963 - 49970032
Alignment:
Q  147 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  49969963 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagatgttgatatgaagttgtaat 49970032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 272
Target Start/End: Complemental strand, 12269718 - 12269620
Alignment:
Q  173 aaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatg 272  Q
    |||| ||||||||||||||||||  ||||||||||| ||||| ||| ||| ||||||| | |||||| | |||||||||| ||| |||||||||||||||    
T  12269718 aaaagatttatatattgtgaaagttgttgatatgaagttgtatttt-ttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatg 12269620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 18439864 - 18439923
Alignment:
Q  218 tgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 277  Q
    ||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  18439864 tgttatatatgaagattattattgatggttacttgttgtatatgtttaaatgatgttgtc 18439923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 20630210 - 20630259
Alignment:
Q  167 aatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  20630210 aatgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 20630259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 1465419 - 1465497
Alignment:
Q  198 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 277  Q
    ||||||||||| ||| |||| |||||| ||||| ||||||| ||||||||||||| | | ||||||||||||||| ||||    
T  1465419 gttgatatgaagttgaaatt-gttatacatgaagattattaatgatggttacttgctctatatgtttaaatgatgttgtc 1465497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 1988953 - 1989012
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    |||||||||||||||||||| || |||||| ||||||||  ||||||||||| |||||||    
T  1988953 ttgatgattaaatgtgaaaagatctatataatgtgaaagttgttgatatgaagttgtaat 1989012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 244
Target Start/End: Original strand, 49389772 - 49389859
Alignment:
Q  157 ttgatgattaaatgtgaaaatattt--atatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatg 244  Q
    |||||||||||||||||||||||||  |||||||||| |||  ||||||||||| |||||| ||||||||| |||  |||||| ||||||    
T  49389772 ttgatgattaaatgtgaaaatatttagatatattgtg-aagttgttgatatgaagttgtaa-ttgttatatttgatgattattgttgatg 49389859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 18439941 - 18440009
Alignment:
Q  147 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||||  ||||||||||| ||||| ||||| |||||||||||||||| | ||||||||| |||||||    
T  18439941 atgatttactttgatgattaa-tgtgagaatatctatatattgtgaaagatgatgatatgaagttgtaat 18440009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 30175304 - 30175346
Alignment:
Q  174 aaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||||||||| ||||||||| ||||||||||| |||||||    
T  30175304 aaatatttatatactgtgaaagatgttgatatgaagttgtaat 30175346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 40812096 - 40812058
Alignment:
Q  178 atttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  40812096 atttatatattgtgaaagatgttgatatgaagttgtaat 40812058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 12269597 - 12269529
Alignment:
Q  147 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||||  ||||||||||| ||||| || ||||||| ||| |||| |||||||||||||| |||||||    
T  12269597 atgatttaagttgatgattaa-tgtgagaagatttataaattttgaaggacgttgatatgaagttgtaat 12269529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 24865480 - 24865610
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 245  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||| ||  ||||||||||||||    
T  24865480 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagatgttgatatgaagttgtaa-ttgttatataagatgattattattgatgg 24865578  T
Q  246 ttacttgatgtgtatgtttaaatgatgatgtc 277  Q
    | ||||||||  ||||||||||||||| ||||    
T  24865579 tgacttgatgcatatgtttaaatgatgttgtc 24865610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 146 - 277
Target Start/End: Complemental strand, 22501131 - 22501001
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 245  Q
    |||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||| ||  |||| |||||||||    
T  22501131 gatgatttactttgatgattaaatgtgaaaatatttatataatgtgaaagacgttgatatgaagttgtaa-ttgttatataagatgattaatattgatgg 22501033  T
Q  246 ttacttgatgtgtatgtttaaatgatgatgtc 277  Q
    | ||||| ||  ||||||||||||||| ||||    
T  22501032 taacttgctgcatatgtttaaatgatgctgtc 22501001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 146 - 277
Target Start/End: Complemental strand, 22509065 - 22508935
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 245  Q
    |||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||| ||  |||| |||||||||    
T  22509065 gatgatttactttgatgattaaatgtgaaaatatttatataatgtgaaagacgttgatatgaagttgtaa-ttgttatataagatgattaatattgatgg 22508967  T
Q  246 ttacttgatgtgtatgtttaaatgatgatgtc 277  Q
    | ||||| ||  ||||||||||||||| ||||    
T  22508966 taacttgctgcatatgtttaaatgatgctgtc 22508935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 7672268 - 7672392
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 245  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||       || |||||||||| ||  ||||||||||||||    
T  7672268 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatg-------aagttgttatataagatgattattattgatgg 7672360  T
Q  246 ttacttgatgtgtatgtttaaatgatgatgtc 277  Q
    | ||||||||  || |||||||||||| ||||    
T  7672361 tgacttgatgcatacgtttaaatgatgctgtc 7672392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 2524439 - 2524510
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatt 217  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2524439 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatcaaattgtaatt 2524510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 6576505 - 6576446
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    |||||||||||| ||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  6576505 ttgatgattaaaagtgaaaaaatttatatattgtgaaagatgttgatatgaagttgtaat 6576446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 24436321 - 24436263
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    |||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||    
T  24436321 ttgatgattaaatgtgaaag-atttatatattgtgaaagatgttgatatgaaattgtaat 24436263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 22501195 - 22501128
Alignment:
Q  176 atatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatg 244  Q
    ||||||||||| ||||||||||||||||||||| |||||| |||||||||| ||  |||| ||||||||    
T  22501195 atatttatataatgtgaaagacgttgatatgaagttgtaa-ttgttatataagatgattaatattgatg 22501128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 22509129 - 22509062
Alignment:
Q  176 atatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatg 244  Q
    ||||||||||| ||||||||||||||||||||| |||||| |||||||||| ||  |||| ||||||||    
T  22509129 atatttatataatgtgaaagacgttgatatgaagttgtaa-ttgttatataagatgattaatattgatg 22509062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 24883713 - 24883673
Alignment:
Q  176 atatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||||||||||||||||| ||||||||||| |||||||    
T  24883713 atatttatatattgtgaaagatgttgatatgaagttgtaat 24883673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 147 - 277
Target Start/End: Complemental strand, 33186243 - 33186114
Alignment:
Q  147 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggt 246  Q
    ||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||  |||||||||||||||    
T  33186243 atgatttactttgatgattaaatgtgaaaatatttatatattatgaaagacgttgatatgaagttgtaa-ttgttatatatgatgattattattgatggt 33186145  T
Q  247 tacttgatgtgtatgtttaaatgatgatgtc 277  Q
     ||||| ||  | ||||||||||||||||||    
T  33186144 gacttgctgcatttgtttaaatgatgatgtc 33186114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 146 - 252
Target Start/End: Complemental strand, 15880839 - 15880734
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 245  Q
    |||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  15880839 gatgatttactttgattattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattattgatgg 15880741  T
Q  246 ttacttg 252  Q
    | |||||    
T  15880740 tgacttg 15880734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 148 - 277
Target Start/End: Complemental strand, 13844712 - 13844584
Alignment:
Q  148 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggtt 247  Q
    |||||||  ||||||||||||||||||||||| |||||| ||||||||  ||||||||| | ||| || | |||||||||||| ||||||||||||||||    
T  13844712 tgatttacgttgatgattaaatgtgaaaatatctatataatgtgaaagttgttgatatggagttgcaaat-gttatatatgaagattattattgatggtt 13844614  T
Q  248 acttgatgtgtatgtttaaatgatgatgtc 277  Q
    ||||| ||| ||||||||||||||| ||||    
T  13844613 acttgttgtatatgtttaaatgatgttgtc 13844584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 157 - 272
Target Start/End: Complemental strand, 46642997 - 46642884
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgt 256  Q
    ||||||||||| || ||||| ||||||||||||||||||  ||| ||||||| |||||||| |||| ||||||| | |||||||| |||||||||| |||    
T  46642997 ttgatgattaa-tgcgaaaagatttatatattgtgaaagttgttaatatgaagttgtaatt-gttacatatgaagaatattattggtggttacttgttgt 46642900  T
Q  257 gtatgtttaaatgatg 272  Q
     |||||||||||||||    
T  46642899 atatgtttaaatgatg 46642884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 52873251 - 52873319
Alignment:
Q  147 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  52873251 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 52873319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 362272 - 362213
Alignment:
Q  148 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaa 208  Q
    |||||||  ||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  362272 tgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagacgttgatatgaa 362213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 9923427 - 9923369
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    |||||||||||||||||||  ||||||||||||||||||| ||||||||||| |||||||    
T  9923427 ttgatgattaaatgtgaaag-atttatatattgtgaaagatgttgatatgaagttgtaat 9923369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 11479432 - 11479490
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    |||||||||||||||||||  ||||||||||||||||||| ||||||||||| |||||||    
T  11479432 ttgatgattaaatgtgaaag-atttatatattgtgaaagatgttgatatgaagttgtaat 11479490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 14185291 - 14185252
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaaga 196  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  14185291 ttgatggttaaatgtgaaaatatttatatattgtgaaaga 14185252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 35812211 - 35812269
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    |||||||||||||||| ||  ||||||||||||||||||| ||||||||||| |||||||    
T  35812211 ttgatgattaaatgtggaag-atttatatattgtgaaagatgttgatatgaagttgtaat 35812269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 13844547 - 13844498
Alignment:
Q  167 aatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||| |||||||||||||||||||||| | ||||||||| |||||||    
T  13844547 aatgtgagaatatttatatattgtgaaagatgctgatatgaagttgtaat 13844498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 267
Target Start/End: Complemental strand, 15190428 - 15190360
Alignment:
Q  198 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaa 267  Q
    ||||||||||| ||| |||| |||||| ||||| ||||||| ||||||||||||| ||| ||||||||||    
T  15190428 gttgatatgaagttgaaatt-gttatacatgaagattattaatgatggttacttgctgtatatgtttaaa 15190360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 46642861 - 46642793
Alignment:
Q  147 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||||  ||||||||||| ||||| || ||||||| | ||||||||||||||||||||| |||||||    
T  46642861 atgatttaatttgatgattaa-tgtgagaagatttataaactgtgaaagacgttgatatgaagttgtaat 46642793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 277
Target Start/End: Complemental strand, 15099461 - 15099383
Alignment:
Q  198 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 277  Q
    ||||||||||| ||| |||| |||||| || || ||||||| ||||||||||||| ||| |||||||||| |||| ||||    
T  15099461 gttgatatgaagttgaaatt-gttatacataaagattattaatgatggttacttgctgtatatgtttaaaagatgttgtc 15099383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 146 - 255
Target Start/End: Complemental strand, 4757 - 4649
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 245  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||     
T  4757 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgattattattattgatgt 4659  T
Q  246 ttacttgatg 255  Q
    | ||||||||    
T  4658 tgacttgatg 4649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 146 - 255
Target Start/End: Complemental strand, 339 - 231
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 245  Q
    |||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||     
T  339 gatgatttactttgatgattatatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgattattattattgatgt 241  T
Q  246 ttacttgatg 255  Q
    | ||||||||    
T  240 tgacttgatg 231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 146 - 277
Target Start/End: Complemental strand, 14482 - 14352
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 245  Q
    |||||||||  |||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||| |||||||||| ||  ||||||||||||||    
T  14482 gatgatttactttgatgattaaatgtgaaaatattcatataatgtgaaagacgttgatatgaagttgtaa-ttgttatataagatgattattattgatgg 14384  T
Q  246 ttacttgatgtgtatgtttaaatgatgatgtc 277  Q
    | ||||||||  ||||||||||||||| ||||    
T  14383 tgacttgatgcatatgtttaaatgatgttgtc 14352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 146 - 269
Target Start/End: Original strand, 51274298 - 51274420
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 245  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||| ||  ||||||||||||||    
T  51274298 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagatgttgatatgaagttgtaa-ttgttatataagatgattattattgatgg 51274396  T
Q  246 ttacttgatgtgtatgtttaaatg 269  Q
    | ||||||||  ||||||||||||    
T  51274397 tgacttgatgcatatgtttaaatg 51274420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 51326998 - 51326904
Alignment:
Q  133 agaggatgaataagatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatg 228  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||| ||||||||||||    
T  51326998 agaggatgaataagatgattaatattgatgattaaatgtgaacatatttatatattatgaaagacgttgatatgaagttgtaa-ttgttatatatg 51326904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 146 - 259
Target Start/End: Original strand, 12328565 - 12328677
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 245  Q
    |||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||  ||||||||||||||    
T  12328565 gatgatttactttgatgattaaatttgaaaatatttatatattgtgaaagacgttgatatgaagatgtaa-ttgttatatatgatgattattattgatgg 12328663  T
Q  246 ttacttgatgtgta 259  Q
    | ||||| ||||||    
T  12328664 tgacttgctgtgta 12328677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 8885539 - 8885468
Alignment:
Q  146 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatt 217  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8885539 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatt 8885468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 148 - 277
Target Start/End: Original strand, 28194397 - 28194525
Alignment:
Q  148 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggtt 247  Q
    |||||||  |||||||||||||||||||| || |||||| ||||||||  ||||||||| | ||| || | |||||||||||| ||||||||||||||||    
T  28194397 tgatttacgttgatgattaaatgtgaaaaaatctatataatgtgaaagttgttgatatgtagttgcaaat-gttatatatgaagattattattgatggtt 28194495  T
Q  248 acttgatgtgtatgtttaaatgatgatgtc 277  Q
    ||||| ||| ||||||||||||||| ||||    
T  28194496 acttgctgtatatgtttaaatgatgttgtc 28194525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 148 - 277
Target Start/End: Complemental strand, 43697546 - 43697418
Alignment:
Q  148 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggtt 247  Q
    |||||||  |||||||||||||||||||| || |||||| ||||||||  ||||||||| | ||| || | |||||||||||| |||||||||| |||||    
T  43697546 tgatttaagttgatgattaaatgtgaaaagatctatatagtgtgaaagttgttgatatggagttgcaaat-gttatatatgaagattattattgttggtt 43697448  T
Q  248 acttgatgtgtatgtttaaatgatgatgtc 277  Q
    ||||| ||| |||||||| |||||| ||||    
T  43697447 acttgctgtatatgtttatatgatgctgtc 43697418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 198 - 277
Target Start/End: Complemental strand, 20636961 - 20636883
Alignment:
Q  198 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 277  Q
    ||||| ||||| |||||||| |||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  20636961 gttgacatgaagttgtaatt-gttatacatgaatattattattgatggttacttgctgtatatgtttaaatgatgttgtc 20636883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 28194543 - 28194611
Alignment:
Q  147 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  28194543 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 28194611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 43543137 - 43543069
Alignment:
Q  147 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  43543137 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 43543069  T

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Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 49261452 - 49261380
Alignment:
Q  198 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgat 271  Q
    ||||||||||| |||||||| |||||| ||||| ||||||||||||||||||||| | | ||||||||||||||    
T  49261452 gttgatatgaagttgtaatt-gttatacatgaagattattattgatggttacttgttatatatgtttaaatgat 49261380  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 48301121 - 48301083
Alignment:
Q  178 atttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  48301121 atttatatattgtgaaagatgttgatatgaagttgtaat 48301083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 43697400 - 43697332
Alignment:
Q  147 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||||  ||||||||||| ||||| | |||| ||||||||||||||| | ||||||||| |||||||    
T  43697400 atgatttactttgatgattaa-tgtgagattattgatatattgtgaaagatgctgatatgaagttgtaat 43697332  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 46382652 - 46382717
Alignment:
Q  148 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    |||||||  ||||||||||| ||||| ||||||||||  |||||||||| ||||||||||| |||||||    
T  46382652 tgatttactttgatgattaa-tgtgagaatatttata--ttgtgaaagatgttgatatgaagttgtaat 46382717  T

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Target: scaffold0395 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 158 - 277
Target Start/End: Complemental strand, 11025 - 10907
Alignment:
Q  158 tgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtg 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||  |||||||||||| || ||||| ||      
T  11025 tgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaatttttaa-ttgttatatatgatgattattattgattgtgacttgctgca 10927  T
Q  258 tatgtttaaatgatgatgtc 277  Q
    ||||||||||||||| ||||    
T  10926 tatgtttaaatgatgttgtc 10907  T

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Target: scaffold0815 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 611 - 496
Alignment:
Q  161 tgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtat 260  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||  ||||||||||||||| ||||| ||  |||    
T  611 tgattaaatgagaaaatatttatatattgtgaaagacgttgatatgaaattataa-ttgttatatatgatgattattattgatggtgacttgctgcatat 513  T
Q  261 gtttaaatgatgatgtc 277  Q
    ||| |||||||| ||||    
T  512 gttaaaatgatgttgtc 496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 148 - 277
Target Start/End: Original strand, 43732 - 43860
Alignment:
Q  148 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggtt 247  Q
    |||||||  |||||||||||||||||||| || |||||| ||||||||  ||||||||| | ||| || | |||||||||||| ||||||||||||||||    
T  43732 tgatttacgttgatgattaaatgtgaaaagatctatataatgtgaaagttgttgatatggagttgcaaat-gttatatatgaagattattattgatggtt 43830  T
Q  248 acttgatgtgtatgtttaaatgatgatgtc 277  Q
    ||||| ||| ||||||||||||||| ||||    
T  43831 acttgctgtatatgtttaaatgatgttgtc 43860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 148 - 277
Target Start/End: Original strand, 47652 - 47780
Alignment:
Q  148 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggtt 247  Q
    |||||||  |||||||||||||||||||| || |||||| ||||||||  ||||||||| | ||| || | |||||||||||| ||||||||||||||||    
T  47652 tgatttacgttgatgattaaatgtgaaaagatctatataatgtgaaagttgttgatatgtagttgcaaat-gttatatatgaagattattattgatggtt 47750  T
Q  248 acttgatgtgtatgtttaaatgatgatgtc 277  Q
    ||||| ||| ||||||||||||||| ||||    
T  47751 acttgttgtatatgtttaaatgatgttgtc 47780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 43878 - 43946
Alignment:
Q  147 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| | ||||||||| |||||||    
T  43878 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgctgatatgaagttgtaat 43946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 6767 - 6839
Alignment:
Q  144 aagatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  6767 aagatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatggagttgtaat 6839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 15439 - 15499
Alignment:
Q  148 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaa 208  Q
    |||||||  |||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  15439 tgatttaagttgatgattaaatgtgaaaatatttatatattgtgaaaaatgttgatatgaa 15499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 24497 - 24557
Alignment:
Q  148 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaa 208  Q
    |||||||  |||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  24497 tgatttaagttgatgattaaatgtgaaaatatttatatattgtgaaaaatgttgatatgaa 24557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 85352 - 85300
Alignment:
Q  218 tgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatga 270  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  85352 tgttatatatgaagattattattgatggttacttgatgtatatgtttaaatga 85300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 85275 - 85207
Alignment:
Q  147 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  85275 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 85207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 36142 - 36210
Alignment:
Q  147 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  36142 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 36210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 59327 - 59386
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatt 217  Q
    |||||||||||||||||||  ||||||||||||||||||| ||||||||||| ||||||||    
T  59327 ttgatgattaaatgtgaaag-atttatatattgtgaaagatgttgatatgaagttgtaatt 59386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0810
Description:

Target: scaffold0810; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 3062 - 3004
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  3062 ttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 3004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 363032 - 362964
Alignment:
Q  147 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||||  ||||||||||| ||||| |||||||||||||| ||||||| ||||||||||| |||||||    
T  363032 atgatttactttgatgattaa-tgtgagaatatttatatattttgaaagatgttgatatgaagttgtaat 362964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 77019 - 76962
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    |||||||||||||||||||||  ||||||||||||||||| || |||||||| |||||||    
T  77019 ttgatgattaaatgtgaaaat--ttatatattgtgaaagatgtggatatgaagttgtaat 76962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1137 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1137
Description:

Target: scaffold1137; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 2300 - 2378
Alignment:
Q  198 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 277  Q
    ||||||||||| ||| |||| ||| || ||||| ||||||| ||||||||||||| ||| ||||||||||||||| ||||    
T  2300 gttgatatgaagttgaaatt-gttgtacatgaagattattaatgatggttacttgttgtatatgtttaaatgatgctgtc 2378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 5478 - 5536
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    |||||||||||||||||||  ||||||||||||||||||  ||||||||||| |||||||    
T  5478 ttgatgattaaatgtgaaag-atttatatattgtgaaaggtgttgatatgaagttgtaat 5536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 935 - 877
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    |||||||||||||||||||  ||| ||||||||||||||| ||||||||||| |||||||    
T  935 ttgatgattaaatgtgaaag-attaatatattgtgaaagatgttgatatgaagttgtaat 877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0513 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0513
Description:

Target: scaffold0513; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 10963 - 11031
Alignment:
Q  147 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    ||||||||  ||||||||| | ||||| |||||||||||||||| ||||| ||||||||||| |||||||    
T  10963 atgatttactttgatgattta-tgtgagaatatttatatattgtaaaagatgttgatatgaagttgtaat 11031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 3194 - 3136
Alignment:
Q  157 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 216  Q
    |||||||||||||||||||  |||||||||| |||||| | ||||||||||| |||||||    
T  3194 ttgatgattaaatgtgaaag-atttatatatcgtgaaaaatgttgatatgaagttgtaat 3136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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