View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0723_low_6 (Length: 275)

Name: NF0723_low_6
Description: NF0723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0723_low_6
NF0723_low_6
[»] scaffold0227 (2 HSPs)
scaffold0227 (38-193)||(25934-26089)
scaffold0227 (186-241)||(25841-25896)
[»] chr6 (3 HSPs)
chr6 (46-193)||(22804068-22804215)
chr6 (46-163)||(21627092-21627209)
chr6 (116-162)||(18379911-18379957)
[»] chr2 (2 HSPs)
chr2 (38-163)||(18939822-18939947)
chr2 (90-154)||(24378983-24379047)
[»] chr1 (1 HSPs)
chr1 (42-193)||(22462716-22462867)
[»] chr7 (2 HSPs)
chr7 (92-150)||(13650755-13650813)
chr7 (116-193)||(9707916-9707993)
[»] chr4 (1 HSPs)
chr4 (116-193)||(13574183-13574260)
[»] scaffold0175 (1 HSPs)
scaffold0175 (39-81)||(9468-9510)
[»] scaffold0066 (1 HSPs)
scaffold0066 (88-150)||(58935-58997)
[»] scaffold0261 (1 HSPs)
scaffold0261 (90-154)||(2944-3008)


Alignment Details
Target: scaffold0227 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 38 - 193
Target Start/End: Complemental strand, 26089 - 25934
Alignment:
Q  38 acatcatcacaccccactacaaccaaccaagagactgaaacatcaacctcacagaaagcctctaaagtagctcccatggaagttactttagaaagccctc 137  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26089 acatcatcacaccccactacaaccaaccaagagactgaaatatcaacctcacagaaagcctctaaagtagctcccatggaaattactttagaaagccctc 25990  T
Q  138 aacaacaaacacctaacacataaatgacccaaacaaatatcgctacacctgaacaa 193  Q
    ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  25989 aacaacaaacacctaacacataaatgaccaaaaaaaatatcactacacctgaacaa 25934  T

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Target: scaffold0227; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 25896 - 25841
Alignment:
Q  186 ctgaacaaacttcattcccttctattcctgaaaccatcagtaaacctgaccctatg 241  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25896 ctgaacaaactccattcccttctattcctgaaaccatcagtaaacctgaccctatg 25841  T

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Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 46 - 193
Target Start/End: Complemental strand, 22804215 - 22804068
Alignment:
Q  46 acaccccactacaaccaaccaagagactgaaacatcaacctcacagaaagcctctaaagtagctcccatggaagttactttagaaagccctcaacaacaa 145  Q
    |||||||||| ||||||||||||||  |||| |||| | | |||| ||||||||| | |||||| |    |||||||||||||||||||| |||||||||    
T  22804215 acaccccacttcaaccaaccaagagcgtgaatcatccaacccacaaaaagcctctgaggtagcttcagaagaagttactttagaaagcccccaacaacaa 22804116  T
Q  146 acacctaacacataaatgacccaaacaaatatcgctacacctgaacaa 193  Q
     |||| ||  || ||||  |||||||||||||| ||||||||||||||    
T  22804115 tcaccaaaatcacaaatagcccaaacaaatatcactacacctgaacaa 22804068  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 163
Target Start/End: Complemental strand, 21627209 - 21627092
Alignment:
Q  46 acaccccactacaaccaaccaagagactgaaacatcaacctcacagaaagcctctaaagtagctcccatggaagttactttagaaagccctcaacaacaa 145  Q
    |||||||||| |||| ||||||||| | ||||| || | |||| | |||||||||||||||||| |    |||||| ||||||||||||| |||||||||    
T  21627209 acaccccacttcaactaaccaagagcccgaaacgtctaactcaaaaaaagcctctaaagtagcttcagatgaagttgctttagaaagcccacaacaacaa 21627110  T
Q  146 acacctaacacataaatg 163  Q
    ||||| |||||| |||||    
T  21627109 acaccaaacacacaaatg 21627092  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 18379957 - 18379911
Alignment:
Q  116 gaagttactttagaaagccctcaacaacaaacacctaacacataaat 162  Q
    |||||||||||||||||||| ||||||||| |||| |||||| ||||    
T  18379957 gaagttactttagaaagcccccaacaacaagcaccaaacacacaaat 18379911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 18939947 - 18939822
Alignment:
Q  38 acatcatcacaccccactacaaccaaccaagagactgaaacatcaacctcacagaaagcctctaaagtagctcccatggaagttactttagaaagccctc 137  Q
    |||||||||||||| ||| |||||||||||||| |||||||||  | || ||| ||| ||||| |||||||| |    |||||| ||||||||||||| |    
T  18939947 acatcatcacacccaacttcaaccaaccaagagtctgaaacatgtaacttacaaaaatcctctgaagtagcttcagatgaagttgctttagaaagccccc 18939848  T
Q  138 aacaacaaacacctaacacataaatg 163  Q
    ||||||||||||| |||||| |||||    
T  18939847 aacaacaaacaccaaacacacaaatg 18939822  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 24379047 - 24378983
Alignment:
Q  90 agaaagcctctaaagtagctcccatggaagttactttagaaagccctcaacaacaaacacctaac 154  Q
    |||||| ||||||||||||| | |  |||||||||||||||||||| ||||||||| ||||||||    
T  24379047 agaaagtctctaaagtagcttctagtgaagttactttagaaagcccccaacaacaagcacctaac 24378983  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 193
Target Start/End: Original strand, 22462716 - 22462867
Alignment:
Q  42 catcacaccccactacaaccaaccaagagactgaaacatcaacctcacagaaagcctctaaagtagctcccatggaagttactttagaaagccctcaaca 141  Q
    ||||||||||||||||||||||||||||  ||||| |||| | | ||||||||| || | |||||||| |    ||||||| |||||||||||| |||||    
T  22462716 catcacaccccactacaaccaaccaagaacctgaatcatccaacccacagaaagactatgaagtagcttcagaagaagttattttagaaagcccccaaca 22462815  T
Q  142 acaaacacctaacacataaatgacccaaacaaatatcgctacacctgaacaa 193  Q
    |||| |||| ||  || |||  ||||||||||||||| || | |||||||||    
T  22462816 acaatcaccaaaatcacaaacaacccaaacaaatatccctgcccctgaacaa 22462867  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 13650813 - 13650755
Alignment:
Q  92 aaagcctctaaagtagctcccatggaagttactttagaaagccctcaacaacaaacacc 150  Q
    ||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||    
T  13650813 aaagcctctaaagtagctcctgatgaagttactttagaaagcccccaacaacaagcacc 13650755  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 9707916 - 9707993
Alignment:
Q  116 gaagttactttagaaagccctcaacaacaaacacctaacacataaatgacccaaacaaatatcgctacacctgaacaa 193  Q
    |||||| |||||||||||||  |||||||| |||| ||  || |||  ||||||||||||||| ||||||||||||||    
T  9707916 gaagttgctttagaaagccccaaacaacaatcaccaaaatcacaaacaacccaaacaaatatcactacacctgaacaa 9707993  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 13574183 - 13574260
Alignment:
Q  116 gaagttactttagaaagccctcaacaacaaacacctaacacataaatgacccaaacaaatatcgctacacctgaacaa 193  Q
    |||||| |||||||||||||  |||||||| |||| ||  || |||  ||||||||||||||| ||||||||||||||    
T  13574183 gaagttgctttagaaagccccaaacaacaatcaccaaaatcacaaacaacccaaacaaatatcactacacctgaacaa 13574260  T

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Target: scaffold0175 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 9468 - 9510
Alignment:
Q  39 catcatcacaccccactacaaccaaccaagagactgaaacatc 81  Q
    ||||||| ||||||||| |||||||||||||| ||||||||||    
T  9468 catcatctcaccccacttcaaccaaccaagagtctgaaacatc 9510  T

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Target: scaffold0066 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 58935 - 58997
Alignment:
Q  88 acagaaagcctctaaagtagctcccatggaagttactttagaaagccctcaacaacaaacacc 150  Q
    ||||||||||| | |||||||| | |  |||||||||||||||||||| ||||||||| ||||    
T  58935 acagaaagcctgtgaagtagcttctagtgaagttactttagaaagcccccaacaacaagcacc 58997  T

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Target: scaffold0261 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 2944 - 3008
Alignment:
Q  90 agaaagcctctaaagtagctcccatggaagttactttagaaagccctcaacaacaaacacctaac 154  Q
    ||||||||||||||| |||| | |  ||||||||||| |||||||| |||| |||| ||||||||    
T  2944 agaaagcctctaaagcagcttctagtgaagttactttggaaagcccccaactacaagcacctaac 3008  T

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