View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0724_high_4 (Length: 423)
Name: NF0724_high_4
Description: NF0724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0724_high_4 |
 |  |
|
[»] scaffold0252 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 4647467 - 4647063
Alignment:
Q |
1 |
tcaataaggattgtgcttgttcatatgtactctccaggaggaaggaatcaaattgaaagagttaatctttcaatcaagcttcaatgattattccaaaatt |
100 |
Q |
|
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
T |
4647467 |
tcaataaggattgtgcttgttcatatgtactctcaaggaggaaggaatcaaattgaaagagttaatctttcaatcaagcttcaacgattattccaaaatt |
4647368 |
T |
 |
Q |
101 |
aatatcatgcgcggaggatatgtccgtctggagaaagactcattgccacaatttaaagcgcgatattgacaattgttgcaaagaaatgcaagacacacgg |
200 |
Q |
|
|
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
T |
4647367 |
gatatcatgcgggaaggatatgtccgtctggagaaagactcattgccacaatttaaagcgcgatattgacaattgttgcaaagaaatgcaagacacgcgg |
4647268 |
T |
 |
Q |
201 |
ctgcaagctactagtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcc--tattggcatcaatgtgc |
298 |
Q |
|
|
|||||||||||| |||||||||||||| ||||||||||||| ||||||| ||||||||||||| ||||| ||||||||||| ||||||| |||| |||| |
|
|
T |
4647267 |
ctgcaagctactggtgaggaccaaactcgcatgtttgagctaaggaaacgcttgcaacggctgatgtcctaagacgatgcctatattggcgtcaacgtgc |
4647168 |
T |
 |
Q |
299 |
taaagctcactggtacaaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgat |
398 |
Q |
|
|
|||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| |
|
|
T |
4647167 |
taaagcacacttgtacaaggatggtgatagaaatacaaagttttttcatgcatcggcaacagctcggaaaaagttaaaccgtataacctctcttgatgat |
4647068 |
T |
 |
Q |
399 |
gatgt |
403 |
Q |
|
|
||||| |
|
|
T |
4647067 |
gatgt |
4647063 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 404
Target Start/End: Complemental strand, 17245580 - 17245446
Alignment:
Q |
270 |
caagacgatgcctattggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaa |
369 |
Q |
|
|
||||| ||||| ||||||| ||| |||| || |||| ||||||||||||||||||||||| || || |||||||||||||| || | |||| | |||| |
|
|
T |
17245580 |
caagatgatgcttattggcggcaacgtgcaaagactcattggtacaaggatggcgatagaaacaccaaattttttcatgcatctgctacagctcgtaaaa |
17245481 |
T |
 |
Q |
370 |
aggtaaaccgtataacctctcttgatgatgatgtc |
404 |
Q |
|
|
||||||| || || | |||||||| ||||||||| |
|
|
T |
17245480 |
aggtaaatcgcattatttctcttgacgatgatgtc |
17245446 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 4630838 - 4630780
Alignment:
Q |
24 |
tatgtactctccaggaggaaggaatcaaattgaaagagttaatctttcaatcaagcttc |
82 |
Q |
|
|
||||||||||| || |||||| ||||||||||||||||||||||||||||||||||| |
|
|
T |
4630838 |
tatgtactctcaagaaggaagctctcaaattgaaagagttaatctttcaatcaagcttc |
4630780 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 4846225 - 4846265
Alignment:
Q |
50 |
aaattgaaagagttaatctttcaatcaagcttcaatgatta |
90 |
Q |
|
|
||||||||||||||||||||||||||||||||||| ||||| |
|
|
T |
4846225 |
aaattgaaagagttaatctttcaatcaagcttcaacgatta |
4846265 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 4636750 - 4636708
Alignment:
Q |
48 |
tcaaattgaaagagttaatctttcaatcaagcttcaatgatta |
90 |
Q |
|
|
|||||||||||||||| |||||||||||||||||||| ||||| |
|
|
T |
4636750 |
tcaaattgaaagagtttatctttcaatcaagcttcaacgatta |
4636708 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 4661685 - 4661649
Alignment:
Q |
48 |
tcaaattgaaagagttaatctttcaatcaagcttcaa |
84 |
Q |
|
|
|||||||||||||||| |||||||||||||||||||| |
|
|
T |
4661685 |
tcaaattgaaagagttgatctttcaatcaagcttcaa |
4661649 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 4666822 - 4666786
Alignment:
Q |
48 |
tcaaattgaaagagttaatctttcaatcaagcttcaa |
84 |
Q |
|
|
||||||||||||||||||||||||||| ||||||||| |
|
|
T |
4666822 |
tcaaattgaaagagttaatctttcaattaagcttcaa |
4666786 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 4672587 - 4672527
Alignment:
Q |
24 |
tatgtactctccaggaggaaggaatcaaattgaaagagttaatctttcaatcaagcttcaa |
84 |
Q |
|
|
||||||||||| || |||||| |||||||||||||||||||||||| || ||||||||| |
|
|
T |
4672587 |
tatgtactctcaagaaggaagctctcaaattgaaagagttaatctttctattaagcttcaa |
4672527 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 4653416 - 4653375
Alignment:
Q |
39 |
aggaaggaatcaaattgaaagagttaatctttcaatcaagct |
80 |
Q |
|
|
|||||| | |||||||||||||||||||||| |||||||||| |
|
|
T |
4653416 |
aggaagcactcaaattgaaagagttaatcttacaatcaagct |
4653375 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 4643558 - 4643522
Alignment:
Q |
48 |
tcaaattgaaagagttaatctttcaatcaagcttcaa |
84 |
Q |
|
|
|||| ||||||||| |||||||||||||||||||||| |
|
|
T |
4643558 |
tcaacttgaaagagctaatctttcaatcaagcttcaa |
4643522 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 4697398 - 4697430
Alignment:
Q |
48 |
tcaaattgaaagagttaatctttcaatcaagct |
80 |
Q |
|
|
||||||||||||| ||||||||||||||||||| |
|
|
T |
4697398 |
tcaaattgaaagacttaatctttcaatcaagct |
4697430 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 184 - 400
Target Start/End: Original strand, 4846 - 5062
Alignment:
Q |
184 |
aaatgcaagacacacggctgcaagctactagtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgccta |
283 |
Q |
|
|
||||||||||||||||| |||| ||| || | ||||| |||| | | ||| |||| ||| |||||| ||||||| || ||||||||||||||||||| |
|
|
T |
4846 |
aaatgcaagacacacggatgcatgcttctggggaggatcaaaatcgtatgcttgaacttcggaaacgtatgcaacgcttgttgtcccaagacgatgccta |
4945 |
T |
 |
Q |
284 |
ttggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtata |
383 |
Q |
|
|
||||| |||| |||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||| |||||||||||||| |||||| |
|
|
T |
4946 |
ttggcgtcaacgtgctaaaactcactggtacaaggatggtgatagaaatacgaagttttttcatgcctcggcaacagcctggaaaaaggtaaatcgtata |
5045 |
T |
 |
Q |
384 |
acctctcttgatgatga |
400 |
Q |
|
|
|| |||||||||||||| |
|
|
T |
5046 |
acatctcttgatgatga |
5062 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 184 - 402
Target Start/End: Original strand, 25101607 - 25101825
Alignment:
Q |
184 |
aaatgcaagacacacggctgcaagctactagtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgccta |
283 |
Q |
|
|
|||||||||||| ||| ||| | ||| || | |||||||||| ||||| |||| ||||||||| | ||||| | | ||||||||||||||||||| |
|
|
T |
25101607 |
aaatgcaagacaaacgactgtatgcttctggggaggaccaaaaccgcatgcttgaccttaggaaatgcatgcaaagcttaatgtcccaagacgatgccta |
25101706 |
T |
 |
Q |
284 |
ttggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtata |
383 |
Q |
|
|
||||| |||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| ||| ||| |||||||||||||| ||||| |
|
|
T |
25101707 |
ttggcgtcaacgtgctaaagctcactggtataaggatggcgacagaaatacaaagttttttcatgcctcgacaacagcccggaaaaaggtaaactgtata |
25101806 |
T |
 |
Q |
384 |
acctctcttgatgatgatg |
402 |
Q |
|
|
||||| ||| ||||||||| |
|
|
T |
25101807 |
acctcccttcatgatgatg |
25101825 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 216 - 400
Target Start/End: Original strand, 8562975 - 8563159
Alignment:
Q |
216 |
gaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtaca |
315 |
Q |
|
|
||||| |||||| ||||| |||||||| |||||| ||||||| |||| |||||||||||||||||||||| |||| |||||||| |||||| ||| | |
|
|
T |
8562975 |
gaggatcaaactcgcatggttgagcttcggaaacgtatgcaacgattgctatcccaagacgatgcctattggcgtcaacgtgctaaaactcactagtata |
8563074 |
T |
 |
Q |
316 |
aggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatga |
400 |
Q |
|
|
||||||| || ||||||||||||||||||||||| ||||||| | || |||| |||||||| || |||| ||||||||| ||||| |
|
|
T |
8563075 |
aggatggtgacagaaatacaaagttttttcatgcctcggcaacaactcggaagaaggtaaatcgcataaactctcttgacgatga |
8563159 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 216 - 402
Target Start/End: Complemental strand, 6009199 - 6009013
Alignment:
Q |
216 |
gaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtaca |
315 |
Q |
|
|
||||||||| | ||||||| ||||| |||||| |||||||||||||||||||||| ||||| ||||||| |||| | || ||| | || ||||| | |
|
|
T |
6009199 |
gaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctgctgtcccaagatgatgcttattggcgtcaacgcgcaaaaacccattggtata |
6009100 |
T |
 |
Q |
316 |
aggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg |
402 |
Q |
|
|
|| |||| || | ||||| ||||||||||| || ||||||| ||| | || |||||||| |||||||| |||||||||||||||| |
|
|
T |
6009099 |
agtatggtgaccgtaataccaagttttttcacgcttcggcaacggctcgaaagaaggtaaatcgtataacttctcttgatgatgatg |
6009013 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 402
Target Start/End: Original strand, 17783823 - 17783976
Alignment:
Q |
253 |
tgcaacggctgctgtcccaagacgatgcctatt----ggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatg |
348 |
Q |
|
|
|||||||||||||||||||||| ||||| |||| ||| |||| || ||| | || ||||| ||||||||||| | ||||| |||||||||||| |
|
|
T |
17783823 |
tgcaacggctgctgtcccaagatgatgcttattaattggcgtcaacacgcaaaaacccattggtataaggatggcgaccgtaatacctagttttttcatg |
17783922 |
T |
 |
Q |
349 |
catcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg |
402 |
Q |
|
|
| ||||||| ||| | || |||||||| ||||||||||||||||||||||||| |
|
|
T |
17783923 |
cttcggcaacggctcgaaagaaggtaaatcgtataacctctcttgatgatgatg |
17783976 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 402
Target Start/End: Original strand, 19085342 - 19085495
Alignment:
Q |
253 |
tgcaacggctgctgtcccaagacgatgcctatt----ggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatg |
348 |
Q |
|
|
|||||||||||||||||||||| ||||| |||| ||| |||| || ||| | || ||||| ||||||||||| | ||||| |||||||||||| |
|
|
T |
19085342 |
tgcaacggctgctgtcccaagatgatgcttattaattggcgtcaacacgcaaaaacccattggtataaggatggcgaccgtaatacctagttttttcatg |
19085441 |
T |
 |
Q |
349 |
catcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg |
402 |
Q |
|
|
| ||||||| ||| | || |||||||| ||||||||||||||||||||||||| |
|
|
T |
19085442 |
cttcggcaacggctcgaaagaaggtaaatcgtataacctctcttgatgatgatg |
19085495 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 402
Target Start/End: Original strand, 19092450 - 19092603
Alignment:
Q |
253 |
tgcaacggctgctgtcccaagacgatgcctatt----ggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatg |
348 |
Q |
|
|
|||||||||||||||||||||| ||||| |||| ||| |||| || ||| | || ||||| ||||||||||| | ||||| |||||||||||| |
|
|
T |
19092450 |
tgcaacggctgctgtcccaagatgatgcttattaattggcgtcaacacgcaaaaacccattggtataaggatggcgaccgtaatacctagttttttcatg |
19092549 |
T |
 |
Q |
349 |
catcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg |
402 |
Q |
|
|
| ||||||| ||| | || |||||||| ||||||||||||||||||||||||| |
|
|
T |
19092550 |
cttcggcaacggctcgaaagaaggtaaatcgtataacctctcttgatgatgatg |
19092603 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 214 - 402
Target Start/End: Complemental strand, 15993585 - 15993397
Alignment:
Q |
214 |
gtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggta |
313 |
Q |
|
|
||||||||||| | ||||||| ||||| |||||| |||||||||||||||||||||| ||||| ||||||| |||| | || ||| | || ||||| |
|
|
T |
15993585 |
gtgaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctgctgtcccaagatgatgcttattggcgtcaacgcgcaaaaacccattggta |
15993486 |
T |
 |
Q |
314 |
caaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg |
402 |
Q |
|
|
||||||||||| | ||||| ||||||||||| || ||||| | ||| | || |||||||| |||||||| |||||||||||||||| |
|
|
T |
15993485 |
taaggatggcgaccgtaataccaagttttttcacgcttcggctacggctcgaaagaaggtaaatcgtataacttctcttgatgatgatg |
15993397 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 402
Target Start/End: Original strand, 14502697 - 14502883
Alignment:
Q |
216 |
gaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtaca |
315 |
Q |
|
|
||||||||| | ||||||| ||||| |||||| |||||||||||||||||||||| ||||| ||||||| |||| | || ||| | || ||||| | |
|
|
T |
14502697 |
gaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctgctgtcccaagatgatgcttattggcgtcaacgcgcaaaaacccattggtata |
14502796 |
T |
 |
Q |
316 |
aggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg |
402 |
Q |
|
|
|||||||||| | ||||| ||||||||||| || ||||| | ||| | || |||||||| |||||||| |||||||||||||||| |
|
|
T |
14502797 |
aggatggcgaccgtaataccaagttttttcacgcttcggctacggctcgaaagaaggtaaatcgtataacttctcttgatgatgatg |
14502883 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 402
Target Start/End: Original strand, 22289352 - 22289538
Alignment:
Q |
216 |
gaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtaca |
315 |
Q |
|
|
||||||||| | ||||||| ||||| |||||| |||||||||||||||||||||| ||||| ||||||| |||| | || ||| | || ||||| | |
|
|
T |
22289352 |
gaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctgctgtcccaagatgatgcttattggcgtcaacgcgcaaaaacccattggtata |
22289451 |
T |
 |
Q |
316 |
aggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg |
402 |
Q |
|
|
|||||||||| | ||||| ||||||||||| || ||||| | ||| | || |||||||| |||||||| |||||||||||||||| |
|
|
T |
22289452 |
aggatggcgaccgtaataccaagttttttcacgcttcggctacggctcgaaagaaggtaaatcgtataacttctcttgatgatgatg |
22289538 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 399
Target Start/End: Original strand, 28243619 - 28243804
Alignment:
Q |
214 |
gtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggta |
313 |
Q |
|
|
||||||||||| | ||||||| ||||| |||||| |||||||||| ||||||||| | ||||| ||||||| |||| ||| ||| |||| ||||| |
|
|
T |
28243619 |
gtgaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctactgtcccaatatgatgcttattggcttcaacatgcaaaaactcattggta |
28243718 |
T |
 |
Q |
314 |
caaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatg |
399 |
Q |
|
|
|||||||| | | ||||| ||||||||||| || ||||| | |||||| || |||||||| | |||||||||||||||||||| |
|
|
T |
28243719 |
taaggatggtaaccgtaataccaagttttttcacgcttcggctacagcttgaaagaaggtaaatcttataacctctcttgatgatg |
28243804 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 253 - 382
Target Start/End: Original strand, 26904527 - 26904656
Alignment:
Q |
253 |
tgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatgcatc |
352 |
Q |
|
|
|||||||||| |||||||||| ||||||||||||| ||| ||||||| |||| |||||||||||||| ||| |||||||||| || ||||||| ||| |
|
|
T |
26904527 |
tgcaacggcttttgtcccaagatgatgcctattggcgacaacgtgctaagactcattggtacaaggatggtgatcgaaatacaaaattctttcatgtatc |
26904626 |
T |
 |
Q |
353 |
ggcaatagcttggaaaaaggtaaaccgtat |
382 |
Q |
|
|
|| ||||||||| |||||||| ||||| |
|
|
T |
26904627 |
tgcttcagcttggaagaaggtaaatcgtat |
26904656 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2716 times since January 2019
Visitors: 4801