View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0724_high_6 (Length: 351)
Name: NF0724_high_6
Description: NF0724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0724_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 172 - 338
Target Start/End: Complemental strand, 47067160 - 47066994
Alignment:
| Q |
172 |
aaatattttcctaacatttcaggaagagggctttacattctatatgaagatgtcaaatcttgcccctatgaagatgtgcacgtccgctggtccatactag |
271 |
Q |
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| T |
47067160 |
aaatattttcctaatatttcaggaagagggctttacattctatatgaagatgtcaaatcttgcccctatgaagatgtgcacgtcctctggtccatactag |
47067061 |
T |
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| Q |
272 |
tggaatcacattcaccttctttgccattgaaaaaatgaaggccatggggacattgcaggattgagaa |
338 |
Q |
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| T |
47067060 |
tggaatcacattcaccttctttgccattgaaaaaatgaaggccatggggacattgcaggattgagaa |
47066994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 47067330 - 47067225
Alignment:
| Q |
1 |
tgtttgtgcactttgcttaaagctttatattcttgaaccaatcaaatcaaccaacaataccagtaccacagtttcttttgaaattaactaaagaaatatg |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
47067330 |
tgtttgtgcactttgcttaaagctt-atattcttgaaccaatcaaatcaaccaacaataccagtaccacagtttttttttaaattaactaaagaaatatg |
47067232 |
T |
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| Q |
101 |
ccaaata |
107 |
Q |
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| T |
47067231 |
ccaaata |
47067225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 191 - 298
Target Start/End: Original strand, 811308 - 811415
Alignment:
| Q |
191 |
caggaagagggctttacattctatatgaagatgtcaaatcttgcccctatgaagatgtgcacgtccgctggtccatactagtggaatcacattcaccttc |
290 |
Q |
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||||||||||| | |||||||| |||||||||||||||||||||||||| ||||||||||| |||| |||||| |||||||||||||||||||||||| | |
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| T |
811308 |
caggaagagggatatacattctgtatgaagatgtcaaatcttgcccctacgaagatgtgcaagtcctctggtcgatactagtggaatcacattcacctcc |
811407 |
T |
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| Q |
291 |
tttgccat |
298 |
Q |
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|||||||| |
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| T |
811408 |
tttgccat |
811415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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