View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0724_high_7 (Length: 253)
Name: NF0724_high_7
Description: NF0724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0724_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 43300325 - 43300106
Alignment:
| Q |
11 |
agcagagagtccggataacaaactaattcatccaaacccatatccaaagctagacgtaaaccttcgggaatggctgtgagctcagtgagaagaatgcacg |
110 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
43300325 |
agcagagagtccggataacagactaattcatccaaacccatatccaaagctagacgtaaacctttgggaatggctgtgagctcagcgagaagaatgcacg |
43300226 |
T |
|
| Q |
111 |
ttgagtcttggaggaaaccgaaaaaacccgagaggaagaaacctgcgttgttacggattaaaccgccaaacccgactcagatatgagtgcctaaacagct |
210 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||| ||||| |
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| T |
43300225 |
ttgagtcttggaggaaaccggaaaaacccgagaggaagaaacctgcgttattacggattaaaccgccaaacctgactcggatatgagtgcctaatcagct |
43300126 |
T |
|
| Q |
211 |
tccatctatgttgatgatgt |
230 |
Q |
| |
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|||||||| ||||| ||||| |
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| T |
43300125 |
tccatctacgttgaggatgt |
43300106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 230
Target Start/End: Original strand, 5191362 - 5191515
Alignment:
| Q |
78 |
gaatggctgtgagctcagtgagaagaatgcacgttgagtcttggaggaaaccgaaaaaacccgagagg-aagaaacctgcgttgttacggattaaaccgc |
176 |
Q |
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|||||| ||||||||||| |||||||||||||| ||||||| ||| |||||| |||||||| ||||| |||||||| ||||| ||| |||||||||| | |
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| T |
5191362 |
gaatggatgtgagctcagcaagaagaatgcacgtcgagtctttgagaaaaccggaaaaacccaagaggaaagaaaccagcgttattatggattaaaccac |
5191461 |
T |
|
| Q |
177 |
caaacccgactcagatatgagtgcctaaacagcttccatctatgttgatgatgt |
230 |
Q |
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|||| ||| ||| |||| ||| |||||||| |||||||| | ||||| ||||| |
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|
| T |
5191462 |
caaagccggctcggatagaagtacctaaacaacttccatcaacgttgaggatgt |
5191515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 32723622 - 32723827
Alignment:
| Q |
11 |
agcagagagtccggataacaaactaattcatccaaacccatatccaaagctagacgtaaaccttcgggaatggctgtgagctcagtgagaagaatgcacg |
110 |
Q |
| |
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||||||||||| | ||||| ||||| || ||||| | ||| ||| | ||||||| |||||| | |||||| ||||||||| | |||||||| ||| |
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| T |
32723622 |
agcagagagtctgagtaacatactaagtcttccaatcacatgtccgatgctagacttaaacccttctgaatggttgtgagctctgcaagaagaattcaca |
32723721 |
T |
|
| Q |
111 |
ttgagtcttggaggaaaccgaaaaaacccgagaggaagaaacctgcgttgttacggattaaaccgccaaacccgactcagatatgagtgcctaaacagct |
210 |
Q |
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| ||||||| ||| || ||| ||||||||||||||||||| || | | ||||||||||||||| |||| ||| ||| | || ||||||||||||| || |
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| T |
32723722 |
tcgagtctttgagaaatccggaaaaacccgagaggaagaagccagtgctgttacggattaaactatcaaaaccggctctgctaggagtgcctaaacaact |
32723821 |
T |
|
| Q |
211 |
tccatc |
216 |
Q |
| |
|
|||||| |
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|
| T |
32723822 |
tccatc |
32723827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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