View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0724_low_1 (Length: 648)
Name: NF0724_low_1
Description: NF0724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0724_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 88 - 648
Target Start/End: Complemental strand, 42063439 - 42062879
Alignment:
| Q |
88 |
catcatcagccagtggatttccaaaatttgatctcatgttgcttggcatgggtcctgatgggcatgtagcttctctgttcccaggtcaccctcttgtcca |
187 |
Q |
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| T |
42063439 |
catcatcagccagtggatttccaaaatttgatctcatgttgcttggcatgggtcctgatgggcatgtagcttctctgttcccaggtcaccctcttgtcca |
42063340 |
T |
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| Q |
188 |
tgagaataaaaaatgggtcacctcaattaacgactcgccaaaaccacccccagagagaataacatttacctttcccgtgatcaattcctctgcttacatt |
287 |
Q |
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| T |
42063339 |
tgagaataaaaaatgggttacctcaattaacgactcgccaaaaccacccccagagagaataacatttacctttcccgtgatcaattcctctgcttacatt |
42063240 |
T |
|
| Q |
288 |
gctcttgtggtgactggtaccggtaaagcggatgcagttcactctgcactacgcggatctgaaacatcggaaaagcttcctgctgcattggtttcacctg |
387 |
Q |
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| T |
42063239 |
gctcttgtggtgactggtaccggcaaagcggatgcagttcactctgcactacgcggatctgaaacatctgaaaagcttcctgctgcattggtttcacctg |
42063140 |
T |
|
| Q |
388 |
aaggggagttgaaatggttcttggacaaaggtgcagcgtcaaagctgtagatcctaaagctaagccagttaatctatgtgttgtgctcgtgtttattttg |
487 |
Q |
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| T |
42063139 |
aaggggagttgaaatggttcttggacaaaggtgctgcgtcaaagctgtagatcctgaagctaagccagttaatctatgtgttgtgctcgtgtttattttg |
42063040 |
T |
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| Q |
488 |
gcaataatgagtttgtgtaatggatcacataactagtactgattctccatatctcagtgatagttggcactggagagggatctttgcagcaataagagga |
587 |
Q |
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| T |
42063039 |
gcaataatgagtttgtgtaatggatcacataactagtactgattctccatatctcagtgatagttgacactggagagggatctttgtagcaataagagga |
42062940 |
T |
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| Q |
588 |
taaagtgaagaaagagtgcaatgcgaagttcttttggttcaaagtctaaaatttcccttga |
648 |
Q |
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| T |
42062939 |
taaagtgaagaaagagtgcaaggcaaagttcttttggttcaaagtctaaaatttcccttga |
42062879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 91 - 272
Target Start/End: Complemental strand, 9514516 - 9514335
Alignment:
| Q |
91 |
catcagccagtggatttccaaaatttgatctcatgttgcttggcatgggtcctgatgggcatgtagcttctctgttcccaggtcaccctcttgtccatga |
190 |
Q |
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||||| ||| |||||| |||||||||||||||||| | || || |||||||| ||||| ||||| || ||| | ||||||||||| ||||| |||| || |
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| T |
9514516 |
catcaaccaatggattaccaaaatttgatctcatgctcctaggtatgggtccggatggacatgttgcatctttattcccaggtcatgctcttctccaaga |
9514417 |
T |
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| Q |
191 |
gaataaaaaatgggtcacctcaattaacgactcgccaaaaccacccccagagagaataacatttacctttcccgtgatcaat |
272 |
Q |
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| || | |||||||| || | | | ||||| ||||||||||| |||||||||| || || || ||||| ||||||||| |
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| T |
9514416 |
ggatcagaaatgggttactttcctcactgactcaccaaaaccaccatcagagagaattactttcacttttccagtgatcaat |
9514335 |
T |
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