View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0724_low_11 (Length: 345)
Name: NF0724_low_11
Description: NF0724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0724_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 6361609 - 6361307
Alignment:
| Q |
17 |
atggacatcatcaattagtggagaaggatagataactctgctgtttttatttattgacattatgttttgtacaatgaataagagtggaaccagcatccag |
116 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6361609 |
atggactttatcaattagtggagaaggatagataactctgctgtttttatttattgacattatgttttgtacaatgaataagagtggaaccagcatccag |
6361510 |
T |
|
| Q |
117 |
atttctgcaactggtattctaattccatggactattgctatactggacagcatgtatgaaggtgaaatagaagaaaaatttgaaacaaaagtttcactct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6361509 |
atttctgcaactggtattctaattccatggactattgctatactggacagcatgtatgaaggtgaaatagaagaaaaatttgaaacaaaagtttcactct |
6361410 |
T |
|
| Q |
217 |
ttagacttaagtggtataagataagtgtaaaaaatcaagttgcaagaacaacatttataatgtttttgcaatgccattaactagctattcctcaactatt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6361409 |
ttagacttaagtggtataagataagtgtaaaaaatcaagttgcaagaacaacatttataatgtttttgcaatgccattaactagctattcctcaactatt |
6361310 |
T |
|
| Q |
317 |
tga |
319 |
Q |
| |
|
||| |
|
|
| T |
6361309 |
tga |
6361307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3292 times since January 2019
Visitors: 4812