View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0724_low_12 (Length: 270)
Name: NF0724_low_12
Description: NF0724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0724_low_12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 46 - 270
Target Start/End: Original strand, 35244759 - 35244983
Alignment:
| Q |
46 |
aatattctcactatgttcattgaaaatttgcaaatggattgtgattcttaaaatgcttttatgtattttttcttgtctaggattgggactcacaaaacgc |
145 |
Q |
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| T |
35244759 |
aatattctcactatgttcattgaaaatttgcaaatggattgtgattcttaaaatgcttttatgtattttttcttgtctaggactgggactcacaaaacgc |
35244858 |
T |
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| Q |
146 |
atcacaaattgctactgagttatgtggctttgtcacaattttatcaggaacatttctccttcacaagacaaaagatatgggaaataaacaacccgaacaa |
245 |
Q |
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| T |
35244859 |
atcacaaattgctactgagttatgtggctttgtcacaattttatcaggaacatttctccttcacaagacaaaagatatgggaaataaaccacccgaacaa |
35244958 |
T |
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| Q |
246 |
tctcctgcttcttcaacaccagacc |
270 |
Q |
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| T |
35244959 |
tctcctgcttcttcaacaccagacc |
35244983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 234
Target Start/End: Complemental strand, 37890219 - 37890109
Alignment:
| Q |
124 |
aggattgggactcacaaaacgcatcacaaattgctactgagttatgtggctttgtcacaattttatcaggaacatttctccttcacaagacaaaagatat |
223 |
Q |
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| T |
37890219 |
aggaatgggactcacaagatgcgtctcagattgtgacagagttgtgcgggtttgtgacaattttatctgggacattcctccttcacaaaactaaggatat |
37890120 |
T |
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| Q |
224 |
gggaaataaac |
234 |
Q |
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| T |
37890119 |
gggaaataaac |
37890109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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