View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0724_low_13 (Length: 257)

Name: NF0724_low_13
Description: NF0724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0724_low_13
NF0724_low_13
[»] chr8 (15 HSPs)
chr8 (1-232)||(12058371-12058602)
chr8 (1-232)||(12039840-12040071)
chr8 (21-232)||(12045094-12045303)
chr8 (1-150)||(12028183-12028331)
chr8 (75-209)||(12137803-12137936)
chr8 (28-91)||(12062552-12062615)
chr8 (183-232)||(12028113-12028163)
chr8 (28-91)||(12067317-12067380)
chr8 (28-91)||(15989503-15989566)
chr8 (167-223)||(15629559-15629615)
chr8 (67-128)||(12889297-12889358)
chr8 (101-137)||(12079025-12079061)
chr8 (167-223)||(15653401-15653457)
chr8 (167-223)||(15970586-15970641)
chr8 (28-56)||(15970720-15970748)


Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 12058602 - 12058371
Alignment:
Q  1 ccaaagatcaacattcaaagacattcaagaagttcaaaaggatggctccataaaaattatactaacaaatttaatttagattttctgtttacgattaccg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12058602 ccaaagatcaacattcaaagacattcaagaagttcaaaaggatggctccataaaaattatactaacaaatttaatttagattttctgtttacgattacgg 12058503  T
Q  101 tgaaatttttgaattctagtaatgacattcaagattttgataattattaacattgatcttggcttgaattatcttttatatggtttgtgattcagtttat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12058502 tgaaatttttgaattctagtaatgacattcaagattttgataattattaatattgatcttggcttgaattatcttttacatggtttgtgattcagtttat 12058403  T
Q  201 ttcattttacaaattcaaattatgcttctgat 232  Q
    |||||||||||||||||| |||||||||||||    
T  12058402 ttcattttacaaattcaagttatgcttctgat 12058371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 12040071 - 12039840
Alignment:
Q  1 ccaaagatcaacattcaaagacattcaagaagttcaaaaggatggctccataaaaattatactaacaaatttaatttagattttctgtttacgattaccg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||| |||||| |    
T  12040071 ccaaagatcaacattcaaagacattcaagaagttcaaaaggatggctccataaaatctatactaacaaatttaatttagattttatgtttatgattacgg 12039972  T
Q  101 tgaaatttttgaattctagtaatgacattcaagattttgataattattaacattgatcttggcttg-aattatcttttatatggtttgtgattcagttta 199  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | |||||||| ||| || |||||| ||||||||||    
T  12039971 tgaaa-ttttgaattctagtaatgacattcaagattttgatatttattaatattgatcttggctcgaaattatctcttacattgtttgttattcagttta 12039873  T
Q  200 tttcattttacaaattcaaattatgcttctgat 232  Q
    |||||||||||||||||||| ||| ||||||||    
T  12039872 tttcattttacaaattcaaagtatacttctgat 12039840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 21 - 232
Target Start/End: Complemental strand, 12045303 - 12045094
Alignment:
Q  21 acattcaagaagttcaaaaggatggctccataaaaattatactaacaaatttaatttagattttctgtttacgattaccgtgaaatttttgaattctagt 120  Q
    |||||||||||||||| ||||| |||||||||||||  ||||||||||||||||||||||||||||| ||| |||||| |||||||||| ||||||||||    
T  12045303 acattcaagaagttcagaaggagggctccataaaaacgatactaacaaatttaatttagattttctgattatgattacggtgaaattttcgaattctagt 12045204  T
Q  121 aatgacattcaagattttgataattattaacattgatcttggcttgaattatcttttatatggtttgtgattcagtttatttcattttacaaattcaaat 220  Q
    ||||||| |||| ||||||||| || |||| ||||||||||||| | |||||| || | |||||||||||||||||||||||||||||||||||||||||    
T  12045203 aatgaca-tcaatattttgatattttttaatattgatcttggctcgtattatc-ttcaaatggtttgtgattcagtttatttcattttacaaattcaaat 12045106  T
Q  221 tatgcttctgat 232  Q
    ||| ||||||||    
T  12045105 tatccttctgat 12045094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 12028331 - 12028183
Alignment:
Q  1 ccaaagatcaacattcaaagacattcaagaagttcaaaaggatggctccataaaaattatactaacaaatttaatttagattttctgtttacgattaccg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||| ||| |||||  |    
T  12028331 ccaaagatcaacattcaaagacattcaagaagttcaaaaggatggctccataaaaacgatactaacaaatttaatttagatattctgattatgattatgg 12028232  T
Q  101 tgaaatttttgaattctagtaatgacattcaagattttgataattattaa 150  Q
    ||||||||| |||||||| |||||||| |||| ||||||||| |||||||    
T  12028231 tgaaattttcgaattctattaatgaca-tcaatattttgatatttattaa 12028183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 209
Target Start/End: Original strand, 12137803 - 12137936
Alignment:
Q  75 tttagattttctgtttacgattaccgtgaaatttttgaattctagtaatgacattcaagattttgataattattaacattgatcttggcttgaattatct 174  Q
    ||||||||||||||||| | ||   |||||||| |||||||||||||||| ||||||||||||||| | ||||| | ||||||| || ||  ||||||||    
T  12137803 tttagattttctgtttatgtttgg-gtgaaattattgaattctagtaatgccattcaagattttgaaatttattgatattgatcatgcctgtaattatct 12137901  T
Q  175 tttatatggtttgtgattcagtttatttcatttta 209  Q
    | || ||||||  ||||||||||||||||||||||    
T  12137902 tgtacatggttgctgattcagtttatttcatttta 12137936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 12062615 - 12062552
Alignment:
Q  28 agaagttcaaaaggatggctccataaaaattatactaacaaatttaatttagattttctgttta 91  Q
    |||||||||||||||||||||||| |||||   ||||| |||||||||||||||||| ||||||    
T  12062615 agaagttcaaaaggatggctccatgaaaatggaactaaaaaatttaatttagattttatgttta 12062552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 12028163 - 12028113
Alignment:
Q  183 gtttgtgattcagtttatttca-ttttacaaattcaaattatgcttctgat 232  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  12028163 gtttgtgatttagtttatttcaattttacaaattcaaattatgcttctgat 12028113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 12067380 - 12067317
Alignment:
Q  28 agaagttcaaaaggatggctccataaaaattatactaacaaatttaatttagattttctgttta 91  Q
    ||||||||||||||||||||||||||||||   ||| | ||||||| |||||||||| ||||||    
T  12067380 agaagttcaaaaggatggctccataaaaatataactcaaaaatttagtttagattttatgttta 12067317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 15989566 - 15989503
Alignment:
Q  28 agaagttcaaaaggatggctccataaaaattatactaacaaatttaatttagattttctgttta 91  Q
    ||||||||||||||||||||||||||||||   ||| | || ||||||||||||||| ||||||    
T  15989566 agaagttcaaaaggatggctccataaaaatggaactcaaaagtttaatttagattttttgttta 15989503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 15629559 - 15629615
Alignment:
Q  167 aattatcttttatatggtttgtgattcagtttatttcattttacaaattcaaattat 223  Q
    |||||||||||| || | || |||||| ||||||||||||||| |||||||||||||    
T  15629559 aattatcttttacatagcttctgattcggtttatttcattttataaattcaaattat 15629615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 12889358 - 12889297
Alignment:
Q  67 aaatttaatttagattttctgtttacgattaccgtgaaatttttgaattctagtaatgacat 128  Q
    ||||||||| |||||||  |||||| | ||||||||||||| | ||||||||||||| ||||    
T  12889358 aaatttaatatagatttcatgtttatgtttaccgtgaaattatcgaattctagtaatcacat 12889297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 12079061 - 12079025
Alignment:
Q  101 tgaaatttttgaattctagtaatgacattcaagattt 137  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  12079061 tgaaattattgaattctagtaatgacattctagattt 12079025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 15653401 - 15653457
Alignment:
Q  167 aattatcttttatatggtttgtgattcagtttatttcattttacaaattcaaattat 223  Q
    |||||||||||| || | || |||||| |||||||||||||||  ||||||||||||    
T  15653401 aattatcttttacatagcttctgattcggtttatttcattttatgaattcaaattat 15653457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 15970641 - 15970586
Alignment:
Q  167 aattatcttttatatggtttgtgattcagtttatttcattttacaaattcaaattat 223  Q
    |||||||||||| |||| || |||||| |||| ||||||||||| ||||||||||||    
T  15970641 aattatcttttacatggcttctgattcggttt-tttcattttacgaattcaaattat 15970586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 56
Target Start/End: Complemental strand, 15970748 - 15970720
Alignment:
Q  28 agaagttcaaaaggatggctccataaaaa 56  Q
    |||||||||||||||||||||||||||||    
T  15970748 agaagttcaaaaggatggctccataaaaa 15970720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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