View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0724_low_18 (Length: 205)

Name: NF0724_low_18
Description: NF0724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0724_low_18
NF0724_low_18
[»] chr4 (4 HSPs)
chr4 (19-205)||(38178511-38178697)
chr4 (61-97)||(5654607-5654643)
chr4 (61-97)||(10546155-10546191)
chr4 (61-97)||(18513257-18513293)
[»] chr3 (2 HSPs)
chr3 (61-97)||(40150587-40150623)
chr3 (61-97)||(34409358-34409394)
[»] scaffold0037 (1 HSPs)
scaffold0037 (61-96)||(102912-102947)
[»] chr7 (4 HSPs)
chr7 (68-103)||(35917390-35917425)
chr7 (63-97)||(30516373-30516407)
chr7 (61-97)||(38134422-38134458)
chr7 (61-97)||(44172906-44172942)
[»] chr6 (5 HSPs)
chr6 (61-96)||(6299519-6299554)
chr6 (61-96)||(6306329-6306364)
chr6 (59-92)||(33135837-33135870)
chr6 (60-92)||(1893390-1893422)
chr6 (61-97)||(19602197-19602233)
[»] chr2 (3 HSPs)
chr2 (159-201)||(11733619-11733661)
chr2 (61-97)||(18570979-18571015)
chr2 (61-97)||(25544488-25544524)
[»] chr8 (3 HSPs)
chr8 (59-96)||(1639495-1639532)
chr8 (68-97)||(27733861-27733890)
chr8 (59-96)||(34201063-34201100)
[»] chr1 (3 HSPs)
chr1 (60-97)||(3921673-3921710)
chr1 (62-98)||(2471228-2471264)
chr1 (61-97)||(11571592-11571628)
[»] scaffold0011 (1 HSPs)
scaffold0011 (61-97)||(240037-240073)
[»] chr5 (1 HSPs)
chr5 (61-97)||(11596471-11596507)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 38178697 - 38178511
Alignment:
Q  19 cattgacacgacatgccgtaaataatttgataaaatgacgtaataatactttgagaaaatgatataattcaatgtaatctcattttggtgctacaaacta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  38178697 cattgacacgacatgccgtaaataatttgataaaatgacgtaataatactttgagaaaatgatataattcaatgtaatctcctttcggtgctacaaacta 38178598  T
Q  119 ctttatgtgttgtgtgtttgagaaatttgtaatgtgtgaacaggatttcaagtgtgtctttcattgggaggtggaactggttctgga 205  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38178597 cattatgtgttgtgtgtttgagaaatttgtaatgtgtgaacaggatttcaagtgtgtcattcattgggaggtggaactggttctgga 38178511  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 5654643 - 5654607
Alignment:
Q  61 ataatactttgagaaaatgatataattcaatgtaatc 97  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  5654643 ataataatttgagaaaatgacataattcaatgtaatc 5654607  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 10546155 - 10546191
Alignment:
Q  61 ataatactttgagaaaatgatataattcaatgtaatc 97  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  10546155 ataataatttgagaaaatgacataattcaatgtaatc 10546191  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 18513293 - 18513257
Alignment:
Q  61 ataatactttgagaaaatgatataattcaatgtaatc 97  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  18513293 ataataatttgagaaaatgacataattcaatgtaatc 18513257  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 40150623 - 40150587
Alignment:
Q  61 ataatactttgagaaaatgatataattcaatgtaatc 97  Q
    |||||| ||||||||||||||||||||||||||||||    
T  40150623 ataataatttgagaaaatgatataattcaatgtaatc 40150587  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 34409394 - 34409358
Alignment:
Q  61 ataatactttgagaaaatgatataattcaatgtaatc 97  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  34409394 ataatacttcgagaaaatgacataattcaatgtaatc 34409358  T

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Target: scaffold0037 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 61 - 96
Target Start/End: Original strand, 102912 - 102947
Alignment:
Q  61 ataatactttgagaaaatgatataattcaatgtaat 96  Q
    |||||| |||||||||||||||||||||||||||||    
T  102912 ataataatttgagaaaatgatataattcaatgtaat 102947  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 103
Target Start/End: Complemental strand, 35917425 - 35917390
Alignment:
Q  68 tttgagaaaatgatataattcaatgtaatctcattt 103  Q
    |||||||||||||||||||||||||||||| |||||    
T  35917425 tttgagaaaatgatataattcaatgtaatcacattt 35917390  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 97
Target Start/End: Complemental strand, 30516407 - 30516373
Alignment:
Q  63 aatactttgagaaaatgatataattcaatgtaatc 97  Q
    |||| ||||||||||||||||||||||||||||||    
T  30516407 aataatttgagaaaatgatataattcaatgtaatc 30516373  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 38134458 - 38134422
Alignment:
Q  61 ataatactttgagaaaatgatataattcaatgtaatc 97  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  38134458 ataataatttgagaaaatgacataattcaatgtaatc 38134422  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 44172942 - 44172906
Alignment:
Q  61 ataatactttgagaaaatgatataattcaatgtaatc 97  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  44172942 ataataatttgagaaaatgacataattcaatgtaatc 44172906  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 61 - 96
Target Start/End: Original strand, 6299519 - 6299554
Alignment:
Q  61 ataatactttgagaaaatgatataattcaatgtaat 96  Q
    |||||| |||||||||||||||||||||||||||||    
T  6299519 ataataatttgagaaaatgatataattcaatgtaat 6299554  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 61 - 96
Target Start/End: Original strand, 6306329 - 6306364
Alignment:
Q  61 ataatactttgagaaaatgatataattcaatgtaat 96  Q
    |||||| |||||||||||||||||||||||||||||    
T  6306329 ataataatttgagaaaatgatataattcaatgtaat 6306364  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 33135837 - 33135870
Alignment:
Q  59 taataatactttgagaaaatgatataattcaatg 92  Q
    |||||||| |||||||||||||||||||||||||    
T  33135837 taataataatttgagaaaatgatataattcaatg 33135870  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 1893422 - 1893390
Alignment:
Q  60 aataatactttgagaaaatgatataattcaatg 92  Q
    ||||||| |||||||||||||||||||||||||    
T  1893422 aataataatttgagaaaatgatataattcaatg 1893390  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 19602233 - 19602197
Alignment:
Q  61 ataatactttgagaaaatgatataattcaatgtaatc 97  Q
    |||||| |||||||||||||||||||||| |||||||    
T  19602233 ataataatttgagaaaatgatataattcagtgtaatc 19602197  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 11733661 - 11733619
Alignment:
Q  159 caggatttcaagtgtgtctttcattgggaggtggaactggttc 201  Q
    |||||||||||||||||| ||||||||||||||| || |||||    
T  11733661 caggatttcaagtgtgtcattcattgggaggtggcacgggttc 11733619  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 18570979 - 18571015
Alignment:
Q  61 ataatactttgagaaaatgatataattcaatgtaatc 97  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  18570979 ataataatttgagaaaatgacataattcaatgtaatc 18571015  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 25544488 - 25544524
Alignment:
Q  61 ataatactttgagaaaatgatataattcaatgtaatc 97  Q
    |||||| |||||||||||||||||||||| |||||||    
T  25544488 ataataatttgagaaaatgatataattcagtgtaatc 25544524  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 1639495 - 1639532
Alignment:
Q  59 taataatactttgagaaaatgatataattcaatgtaat 96  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  1639495 taataatattttgagaaaatgacataattcaatgtaat 1639532  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 97
Target Start/End: Original strand, 27733861 - 27733890
Alignment:
Q  68 tttgagaaaatgatataattcaatgtaatc 97  Q
    ||||||||||||||||||||||||||||||    
T  27733861 tttgagaaaatgatataattcaatgtaatc 27733890  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 34201100 - 34201063
Alignment:
Q  59 taataatactttgagaaaatgatataattcaatgtaat 96  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  34201100 taataataatttgagaaaatgacataattcaatgtaat 34201063  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 3921673 - 3921710
Alignment:
Q  60 aataatactttgagaaaatgatataattcaatgtaatc 97  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  3921673 aataataatttgagaaaatgacataattcaatgtaatc 3921710  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 2471264 - 2471228
Alignment:
Q  62 taatactttgagaaaatgatataattcaatgtaatct 98  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  2471264 taataatttgagaaaatgagataattcaatgtaatct 2471228  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 11571592 - 11571628
Alignment:
Q  61 ataatactttgagaaaatgatataattcaatgtaatc 97  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  11571592 ataataatttgagaaaatgacataattcaatgtaatc 11571628  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 240073 - 240037
Alignment:
Q  61 ataatactttgagaaaatgatataattcaatgtaatc 97  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  240073 ataataatttgagaaaataatataattcaatgtaatc 240037  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 11596507 - 11596471
Alignment:
Q  61 ataatactttgagaaaatgatataattcaatgtaatc 97  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  11596507 ataataatttgagaaaatgacataattcaatgtaatc 11596471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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