View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0724_low_2 (Length: 465)
Name: NF0724_low_2
Description: NF0724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0724_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 259 - 455
Target Start/End: Original strand, 6148916 - 6149112
Alignment:
| Q |
259 |
caaacaaaccttgaacataatatacttagaggaaaacagaagggtgtatgtggggtgcgaagttaaagccctaaaaatattttgtctatttaaatttcct |
358 |
Q |
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| T |
6148916 |
caaacaaaccttgaacataatatacttagaggaaaacagaagggtgtatgtggggtgtgaagttaaagccctaaaaatattttgtctatttaaatttcct |
6149015 |
T |
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| Q |
359 |
ttttacatattttctttccaagtagaacgagataagaacaaaggtacgagttaagttaggcaaacccttaattaaaataaattttgttaaagtatta |
455 |
Q |
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| T |
6149016 |
ttttacattttttctttctaagtagaacgagataagaacaaaggtacgagttaagttagacaaacccttaattaaaataaattttgttaaagtatta |
6149112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 6148785 - 6148870
Alignment:
| Q |
128 |
cttaacagagtccaaccttagagatggattggctttggcttttgggttgtggtgtatatgtgtatgtagaagtgaatacttttgtc |
213 |
Q |
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| T |
6148785 |
cttaacagagtccaaccttagagatggattggctttggcttttgggttgtggtgtatatgtgtatgtagaagtgaatacttttgtc |
6148870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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