View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0724_low_5 (Length: 425)
Name: NF0724_low_5
Description: NF0724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0724_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 398
Target Start/End: Complemental strand, 349888 - 349498
Alignment:
| Q |
11 |
tgagatggacatcatcgtaggtgtaaatttcaccagttggtgcattgatgaggcaaggacgtgaaccatattttgatagattttcaaagcaatatgaatg |
110 |
Q |
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| T |
349888 |
tgagttggacatcatagtaggtgtaaatttcagcagttggagcattgatgaggcaaggacgtgaaccatattttgatagattttcaaagcaatatgaatg |
349789 |
T |
|
| Q |
111 |
aagaggaaggtgtttgggaatgtaaatatcaggaagcttagacttgaaaatgaactcttgttccattgtttggatagtcattagaatgttattgtttgct |
210 |
Q |
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| T |
349788 |
aagaggaaggtgtttgggaatgtaaatatcaggaagcttagacttgaaaatcaactcttgttccattgtttggatagtcattagaatgttattgtttgct |
349689 |
T |
|
| Q |
211 |
taaagagaatgaatattgttgttgatttcaatttttctcttgagaaagaacaagaactacactttgtgtaatataggacttgttatggctaaggtgatgt |
310 |
Q |
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| T |
349688 |
taaagagaatgaatattgttgatgatttcaattattctcttgagaaagaacaagaacttcac-ttgtgtaatataggacttgttatggctaaggtgatgt |
349590 |
T |
|
| Q |
311 |
gaatgt----agccagccacatggaaattggttaaaaggtggtcgtggttggtgaagggacaaaatggacaattcaaaaaatatagttggtg |
398 |
Q |
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| T |
349589 |
gaatgtagccagccagccacatggaaattggttaaaaggtggtcgtggttggtgaagggacaaaatggacaattcaataaatatagttggtg |
349498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 45521120 - 45521059
Alignment:
| Q |
52 |
gcattgatgaggcaaggacgtgaaccatattttgatagattttcaaagcaatatgaatgaag |
113 |
Q |
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||||||||||| || ||||||||||| ||| || ||||||||||| |||||||||||||| |
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| T |
45521120 |
gcattgatgagacatggacgtgaaccgaattgggagagattttcaaaacaatatgaatgaag |
45521059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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