View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0724_low_6 (Length: 424)

Name: NF0724_low_6
Description: NF0724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0724_low_6
NF0724_low_6
[»] chr7 (14 HSPs)
chr7 (54-395)||(4647476-4647817)
chr7 (83-203)||(4666917-4667039)
chr7 (66-197)||(4712075-4712208)
chr7 (66-203)||(4846009-4846148)
chr7 (67-201)||(4783831-4783967)
chr7 (67-201)||(4816260-4816396)
chr7 (1-53)||(4647443-4647495)
chr7 (67-201)||(4636820-4636956)
chr7 (147-203)||(4643714-4643772)
chr7 (147-203)||(4863965-4864023)
chr7 (60-183)||(4653476-4653601)
chr7 (148-203)||(4630971-4631028)
chr7 (147-203)||(4697184-4697242)
chr7 (148-203)||(4672720-4672777)
[»] chr4 (1 HSPs)
chr4 (66-203)||(18925736-18925875)


Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 54 - 395
Target Start/End: Original strand, 4647476 - 4647817
Alignment:
Q  54 accagcccatgcaatcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaac 153  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4647476 accagcccatgcaatcacatcagcataatgttcagccaaaatatcatctataaacatatgaaaaactgtatcacctgaattctttatatgtcaatcaaac 4647575  T
Q  154 tcacaaaagtaaccttaccatataagtaaaaccagaatcaacttcaaaataagttgatggacaggatagatagagtgaaaaaagagaaaactttgaaaac 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4647576 tcacaaaagtaaccttaccatataagtaaaaccagaatcaacttcaaaataagttgatggacaggatagatagagtgaaaaaagagaaaactttgaaaac 4647675  T
Q  254 taattcttaatacatttctactcatttcaccattactaatttgacacattgcctttactttctcagtttatattgagtgtaactaaatttttacttggaa 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4647676 taattcttaatacatttctactcatttcaccattactaatttgacacattgcctttactttctcagtttatattgagtgtaactaaatttttacttggaa 4647775  T
Q  354 gaattgggaattgaacatgagagtttgaagagtagcacattc 395  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  4647776 gaattgggatttgaacatgagagtttgaagagtagcacattc 4647817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 83 - 203
Target Start/End: Original strand, 4666917 - 4667039
Alignment:
Q  83 gttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gtaaccttaccatataagt 180  Q
    ||||| ||| ||||||||||||||| || ||||||||| ||||||||| |||||| ||||| |||||||||||||||||  | |||||||||||||||||    
T  4666917 gttcagccataatatcatctataaaaatctgaaaaactctatcacctggattcttgatatgccaatcaaactcacaaaaatgcaaccttaccatataagt 4667016  T
Q  181 aaaaccagaatcaacttcaaaat 203  Q
    ||||  ||||||||||| |||||    
T  4667017 aaaaatagaatcaactttaaaat 4667039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 66 - 197
Target Start/End: Complemental strand, 4712208 - 4712075
Alignment:
Q  66 aatcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gt 163  Q
    |||||||||||| ||||||||| ||||||||||||  ||||| || ||||||||| ||||||||  |||||| ||| |   |||||||||||||||  ||    
T  4712208 aatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgt 4712109  T
Q  164 aaccttaccatataagtaaaaccagaatcaactt 197  Q
    |||||||||||||||||||||| |||||||||||    
T  4712108 aaccttaccatataagtaaaactagaatcaactt 4712075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 66 - 203
Target Start/End: Complemental strand, 4846148 - 4846009
Alignment:
Q  66 aatcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gt 163  Q
    |||||||||||||||| ||||| ||||||||||||  ||||| || ||||||||| ||||||||  ||||||  || |   |||||||||||||||  ||    
T  4846148 aatcacatcagcatatagttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttggtaagcagatcaaactcacaaaaatgt 4846049  T
Q  164 aaccttaccatataagtaaaaccagaatcaacttcaaaat 203  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  4846048 aaccttaccatataagtaaaactagaatcaacttcgaaat 4846009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 67 - 201
Target Start/End: Complemental strand, 4783967 - 4783831
Alignment:
Q  67 atcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gta 164  Q
    ||||||||||||   |||||| ||||| |||||||||| || || ||||||| | |||||||  | |  || ||||| |||||||||||||||||  |||    
T  4783967 atcacatcagcagcatgttcagccaaactatcatctatgaaaatctgaaaaattctatcaccatcctgtttgatatgccaatcaaactcacaaaaatgta 4783868  T
Q  165 accttaccatataagtaaaaccagaatcaacttcaaa 201  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4783867 accttaccatataagtaaaagcagaatcaacttcaaa 4783831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 67 - 201
Target Start/End: Complemental strand, 4816396 - 4816260
Alignment:
Q  67 atcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gta 164  Q
    |||||||||||| |  ||||| ||||| |||||||||| || || ||||||| | |||||||  | |  || ||||| |||||||||||||||||  |||    
T  4816396 atcacatcagcaaaaagttcagccaaactatcatctatgaaaatctgaaaaattctatcaccatcctgtttgatatgccaatcaaactcacaaaaatgta 4816297  T
Q  165 accttaccatataagtaaaaccagaatcaacttcaaa 201  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4816296 accttaccatataagtaaaagcagaatcaacttcaaa 4816260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4647443 - 4647495
Alignment:
Q  1 tatgaacaagcacaatccttattgacagggagcaccagcccatgcaatcacat 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4647443 tatgaacaagcacaatccttattgacagggagcaccagcccatgcaatcacat 4647495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 67 - 201
Target Start/End: Original strand, 4636820 - 4636956
Alignment:
Q  67 atcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gta 164  Q
    |||||||| || | || |||||||||| | | |||||| || || ||||| ||| ||||||||  ||  || ||||| |||||||||||||||||  |||    
T  4636820 atcacatccgccttttcttcaaccaaagtgttatctatgaatatctgaaagactctatcacctttatagttgatatgccaatcaaactcacaaaaatgta 4636919  T
Q  165 accttaccatataagtaaaaccagaatcaacttcaaa 201  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4636920 accttaccatataagtaaaagcagaatcaacttcaaa 4636956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 4643714 - 4643772
Alignment:
Q  147 atcaaactcacaaaa--gtaaccttaccatataagtaaaaccagaatcaacttcaaaat 203  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||    
T  4643714 atcaaactcacaaaaatgtaaccttaccatataagtaaaaccagaatcaacctcaaaat 4643772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 4863965 - 4864023
Alignment:
Q  147 atcaaactcacaaaa--gtaaccttaccatataagtaaaaccagaatcaacttcaaaat 203  Q
    |||||||||||||||  |||||||||||||||||||||||  |||||||||||||||||    
T  4863965 atcaaactcacaaaaatgtaaccttaccatataagtaaaattagaatcaacttcaaaat 4864023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 60 - 183
Target Start/End: Original strand, 4653476 - 4653601
Alignment:
Q  60 ccatgcaatcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaa 159  Q
    ||||| |||||||||||||| | ||||| |||| | ||||| |||||| || || |||||| ||||||||  || ||| ||| | |||||||| ||||||    
T  4653476 ccatgaaatcacatcagcatttggttcagccaagaaatcatgtataaatatctggaaaactctatcacctttatccttgatacgccaatcaaattcacaa 4653575  T
Q  160 aa--gtaaccttaccatataagtaaa 183  Q
    ||  ||||||| ||||||||||||||    
T  4653576 aaatgtaacctgaccatataagtaaa 4653601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 4630971 - 4631028
Alignment:
Q  148 tcaaactcacaaaa--gtaaccttaccatataagtaaaaccagaatcaacttcaaaat 203  Q
    ||||||||||||||  |||| ||||||||||||||||||  |||||||||||||||||    
T  4630971 tcaaactcacaaaaatgtaatcttaccatataagtaaaagaagaatcaacttcaaaat 4631028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 4697242 - 4697184
Alignment:
Q  147 atcaaactcacaaaagt--aaccttaccatataagtaaaaccagaatcaacttcaaaat 203  Q
    ||||||||||||||| |  ||||||||||||||||||||||||  ||||||||| ||||    
T  4697242 atcaaactcacaaaaatgcaaccttaccatataagtaaaaccaacatcaacttcgaaat 4697184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 4672720 - 4672777
Alignment:
Q  148 tcaaactcacaaaa--gtaaccttaccatataagtaaaaccagaatcaacttcaaaat 203  Q
    ||||||||||||||  ||||||||||||||||||| |||  ||||||||| |||||||    
T  4672720 tcaaactcacaaaaatgtaaccttaccatataagtgaaagaagaatcaacctcaaaat 4672777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 66 - 203
Target Start/End: Complemental strand, 18925875 - 18925736
Alignment:
Q  66 aatcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gt 163  Q
    |||||||||||||| | ||||| ||||| ||||||||||||| || ||||||||| ||||||||  |||||||||||| ||||||||||| |||||  |     
T  18925875 aatcacatcagcatttcgttcagccaaattatcatctataaaaatctgaaaaactctatcaccttgattctttatatgccaatcaaactcgcaaaaatgc 18925776  T
Q  164 aaccttaccatataagtaaaaccagaatcaacttcaaaat 203  Q
    || ||||||| |||||||||  ||||||||||||||||||    
T  18925775 aatcttaccaaataagtaaaggcagaatcaacttcaaaat 18925736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3018 times since January 2019
Visitors: 4805