View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0725_high_3 (Length: 356)
Name: NF0725_high_3
Description: NF0725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0725_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 11412282 - 11411948
Alignment:
| Q |
1 |
tcatctggggaactgtaagaaaatcaaaactggtgaatcagtggaaagcaaaaaacaagatgcaaggcaaaatgttaatttgaagactaatcaagttttt |
100 |
Q |
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| T |
11412282 |
tcatttggggaattgtaagaaaatcaaaactggtgaatcagtggaaaggaaaaaacaagatgcaaggcaaaatgttaatttgaagactaatcaagttttt |
11412183 |
T |
|
| Q |
101 |
gttcaaaccaaagatggtagaagtgataagaataaagataaagaagtgattgatattgaagcttcagctgatagagaggaagctcacaggaaaaagcagg |
200 |
Q |
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| T |
11412182 |
gttcaaaccaaagatggtagaagtgataagaataaagataaagaagtgattgatatttaagcttcagctgaaagagaggaagctaacaggaaaaagcagg |
11412083 |
T |
|
| Q |
201 |
aaaggctacttgatcaagaaggaagtaccagtaaaacaaatcctgcaaatctgttgaaggagcaggatatggtactagagcaggaattgaatgaacaaca |
300 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11412082 |
aaaggctacttgatcaagaaggaagttccagtaaaacaaatcctgcagatctgttgaaggatcaggatatggtactagagcaggaattgaatgaacaaca |
11411983 |
T |
|
| Q |
301 |
tcaaaacatcatgggggctagagtcaatgatgatg |
335 |
Q |
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| T |
11411982 |
tcaaaacatcatggtggctagagtcaatgatgatg |
11411948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 38524248 - 38524538
Alignment:
| Q |
1 |
tcatctggggaactgtaagaaaatcaaaactggtgaatcagtggaaagcaaaaaacaagatgcaaggcaaaatgttaatttgaagactaatcaagttttt |
100 |
Q |
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|||| |||| |||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38524248 |
tcatttgggaaactgtaagaaaatcaaaactggtgagtcagtggaaaacaaaaaacaggatgcaaggcaaaatgttaatttgaagactaatcaagttttt |
38524347 |
T |
|
| Q |
101 |
gttcaaaccaaagatggtagaagtgataagaataaagataaagaagtgattgatattgaagcttcagct------gatagagaggaagctcacaggaaaa |
194 |
Q |
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||||||||||||||||| | || | |||||||||||||||| ||||||||||| |||||||||||| | || | ||| ||||| ||| ||| |
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| T |
38524348 |
gttcaaaccaaagatggaacaaatactaagaataaagataaataagtgattgatcttgaagcttcagatggaaaggaaaaggagaaagctaacaagaatg |
38524447 |
T |
|
| Q |
195 |
agcaggaaaggctacttgatcaagaaggaagtaccagtaaaacaaatcctgcaaatctgttgaaggagcaggatatggtactagagcagga |
285 |
Q |
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|||| | || | ||||||||||||||| ||| ||| |||| ||||||| ||| |||||||||||||||||||| | ||||||||||||| |
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| T |
38524448 |
agcaaggaaagttacttgatcaagaagcaagctccaataaatcaaatccagcagctctgttgaaggagcaggataagttactagagcagga |
38524538 |
T |
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