View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0725_high_9 (Length: 251)

Name: NF0725_high_9
Description: NF0725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0725_high_9
NF0725_high_9
[»] chr4 (14 HSPs)
chr4 (1-188)||(2381596-2381783)
chr4 (4-182)||(2391227-2391405)
chr4 (1-181)||(2380332-2380512)
chr4 (42-166)||(2547222-2547346)
chr4 (56-167)||(2367923-2368034)
chr4 (1-181)||(2382706-2382877)
chr4 (46-166)||(2533991-2534111)
chr4 (35-166)||(2621402-2621533)
chr4 (55-97)||(12124592-12124634)
chr4 (50-102)||(2361217-2361269)
chr4 (50-87)||(2486064-2486101)
chr4 (40-95)||(2467294-2467349)
chr4 (55-98)||(12126647-12126690)
chr4 (55-95)||(2373488-2373528)
[»] chr5 (1 HSPs)
chr5 (43-102)||(41900496-41900555)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 2381596 - 2381783
Alignment:
Q  1 caaatcgctcattttctccaactttttaaaaatccctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgttccgaa 100  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2381596 caaatcgctcattttctccaagttttttaaaatccctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgttctgaa 2381695  T
Q  101 attacttggatcaacaagaaggatttcttattcattgtcgattgcttccctttactcgaagaactcgttctcaagaaaacaggctatt 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2381696 attacttggatcaacaagaaggatttcttattcattgtcgattgcttccctttactcgaagaactcgttctcaagaaaacaggctatt 2381783  T

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Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 4 - 182
Target Start/End: Original strand, 2391227 - 2391405
Alignment:
Q  4 atcgctcattttctccaactttttaaaaatccctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgttccgaaatt 103  Q
    |||||||||| | |||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2391227 atcgctcattctttccaacttctacaaaatccctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgttccgaattt 2391326  T
Q  104 acttggatcaacaagaaggatttcttattcattgtcgattgcttccctttactcgaagaactcgttctcaagaaaacag 182  Q
      ||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||| ||||||    
T  2391327 ttttggatcaacaagaaggatatcttcttcattgttgattgcttccctttactcgaagaacttgttctcaaggaaacag 2391405  T

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Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 2380332 - 2380512
Alignment:
Q  1 caaatcgctcattttctccaactttttaaaaatccctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgttccgaa 100  Q
    ||||||||||||| |||||||| | || |||||||| ||| |||| || ||| |||||||||||||||||||||||||||| ||| | |  |||| | ||    
T  2380332 caaatcgctcattctctccaacctcttcaaaatcccgaaaaatggattgcgacctttgtccaaaaagatgaaaaatttgacttctttcatgtgtttcaaa 2380431  T
Q  101 attacttggatcaacaagaaggatttcttattcattgtcgattgcttccctttactcgaagaactcgttctcaagaaaaca 181  Q
    |||||||||||||| ||||||||| | |  |||||||  ||||||||||||| ||| |||| ||||||||||||| |||||    
T  2380432 attacttggatcaataagaaggatatttacttcattgctgattgcttcccttcacttgaagtactcgttctcaaggaaaca 2380512  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 166
Target Start/End: Complemental strand, 2547346 - 2547222
Alignment:
Q  42 atgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgttccgaaattacttggatcaacaagaaggatttcttattcattgtcga 141  Q
    ||||||| |||||||||||  ||||||||||||||||||| ||||| | ||||||| |||| || |  |||| |||||| ||||| || |||||||  ||    
T  2547346 atgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccaaaatcacctttatcagcaagaatgatttattcttcattgctga 2547247  T
Q  142 ttgcttccctttactcgaagaactc 166  Q
    ||| ||||||||||| |||||||||    
T  2547246 ttgtttccctttacttgaagaactc 2547222  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 167
Target Start/End: Original strand, 2367923 - 2368034
Alignment:
Q  56 ttgtccaaaaagatgaaaaatttgacctctcttacttgttccgaaattacttggatcaacaagaaggatttcttattcattgtcgattgcttccctttac 155  Q
    |||||||||| ||||||||| |||||||||||||||||||||| ||| | | | ||  ||||||  ||| |||| |||||||  ||||| ||||||||||    
T  2367923 ttgtccaaaaggatgaaaaacttgacctctcttacttgttccggaatgattagtattcacaagagtgatctcttcttcattgctgattgtttccctttac 2368022  T
Q  156 tcgaagaactcg 167  Q
    ||||||||||||    
T  2368023 tcgaagaactcg 2368034  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 2382706 - 2382877
Alignment:
Q  1 caaatcgctcattttctccaactttttaaaaatccctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgttccgaa 100  Q
    |||||| |||||| |||||||| | || ||||||| || | |||| || |||||||||||||||||||||||||| ||||| ||| | | ||||| | ||    
T  2382706 caaatcactcattctctccaacctcttcaaaatccatataaatggattgcgagctttgtccaaaaagatgaaaaaattgacttctttcatttgtttcaaa 2382805  T
Q  101 attacttggatcaacaagaaggatttcttattcattgtcgattgcttccctttactcgaagaactcgttctcaagaaaaca 181  Q
    ||||| |         |||||||| |||  ||||||| | ||||||||||||||||||| | ||||||||||||| |||||    
T  2382806 attacgt---------agaaggatatctatttcattgccaattgcttccctttactcgatgtactcgttctcaaggaaaca 2382877  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 166
Target Start/End: Complemental strand, 2534111 - 2533991
Alignment:
Q  46 gttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgttccgaaattacttggatcaacaagaaggatttcttattcattgtcgattgc 145  Q
    |||||||||||||||||| |||||||||||||| || ||||| |||||||   |||| |  |  ||||||||||| ||| |||| || ||||  |||||     
T  2534111 gttccgagctttgtccaagaagatgaaaaatttaacatctctcacttgttatcaaatgagctatatcaacaagaatgatctcttcttgattgctgattgt 2534012  T
Q  146 ttccctttactcgaagaactc 166  Q
    ||||||||||| |||||||||    
T  2534011 ttccctttacttgaagaactc 2533991  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 166
Target Start/End: Original strand, 2621402 - 2621533
Alignment:
Q  35 cctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgttccgaaattacttggatcaacaagaaggatttcttattca 134  Q
    |||| ||||||||| |||||||| |||||||| |||||||||||||| ||||| ||||||| |  ||||| |   |||  |||||| ||| | || |||     
T  2621402 cctacagatgggttgcgagctttctccaaaaatatgaaaaatttgacatctctcacttgttaccgaattaataaaatccgcaagaatgatctattcttcc 2621501  T
Q  135 ttgtcgattgcttccctttactcgaagaactc 166  Q
    |||  ||||| |||||||||||||||||||||    
T  2621502 ttgctgattgtttccctttactcgaagaactc 2621533  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 12124634 - 12124592
Alignment:
Q  55 tttgtccaaaaagatgaaaaatttgacctctcttacttgttcc 97  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  12124634 tttgtccaaaaagatgaaaaatttgacctctctcacttgttcc 12124592  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 2361217 - 2361269
Alignment:
Q  50 cgagctttgtccaaaaagatgaaaaatttgacctctcttacttgttccgaaat 102  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||||| ||||    
T  2361217 cgagctttgtccaaaaaaatgaaaaatttgacatctctcacttgttccaaaat 2361269  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 2486101 - 2486064
Alignment:
Q  50 cgagctttgtccaaaaagatgaaaaatttgacctctct 87  Q
    |||||||||||||||||||||||||||||||| |||||    
T  2486101 cgagctttgtccaaaaagatgaaaaatttgacatctct 2486064  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 2467349 - 2467294
Alignment:
Q  40 agatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 95  Q
    ||||||||| |||||||| |||||| |||||||||||||||| || || |||||||    
T  2467349 agatgggttgcgagctttctccaaagagatgaaaaatttgacatcactcacttgtt 2467294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 12126690 - 12126647
Alignment:
Q  55 tttgtccaaaaagatgaaaaatttgacctctcttacttgttccg 98  Q
    |||||||||| |||||||||||||||||||||| | ||||||||    
T  12126690 tttgtccaaacagatgaaaaatttgacctctctcatttgttccg 12126647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 2373488 - 2373528
Alignment:
Q  55 tttgtccaaaaagatgaaaaatttgacctctcttacttgtt 95  Q
    ||||||| ||||||||||| ||||||||||||| |||||||    
T  2373488 tttgtccgaaaagatgaaatatttgacctctctcacttgtt 2373528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 41900496 - 41900555
Alignment:
Q  43 tgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgttccgaaat 102  Q
    |||||| |||||||| ||||||||||| | || |||||||||||| ||||||| ||||||    
T  41900496 tgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgttacgaaat 41900555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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