View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0725_low_1 (Length: 641)
Name: NF0725_low_1
Description: NF0725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0725_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 42535631 - 42535179
Alignment:
| Q |
1 |
tcatgaactcagttctgcttaccgatggcataaccttaaaacttggtaagtcaagaatctgaaggttgacattgtcctgcatgactagtagcttttcgtt |
100 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
42535631 |
tcatgaactcagttctgcttaccgatgccataatcttaaaacttggtaagtcaagaatctgaaggttgacattgtcctgcatgactagaagcttttcatt |
42535532 |
T |
|
| Q |
101 |
gcacacaatcatgtcttcctccctattccaatgtagacaattgaattgtttgagaactttgccatcctcaatggatataatcttgactggaatatggtca |
200 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42535531 |
gcacacaatcatgtctacctccctattctaatgtagacaattgaattgtttgagaactttgccatcctcaatggatataatcttgactggaatatggtca |
42535432 |
T |
|
| Q |
201 |
cttgttcttttgaagatgaataacatgatgccagaagtgatgttgatccaatcaacattgctaaatgaaaacaagtatagaaaagtgtagtttttaagat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42535431 |
cttgttcttttgaagatgaataacatgatgccagaactgatgttgatccaatcaacattgctaaatgaaaacaagtatagaaaagtgtagtttttaagat |
42535332 |
T |
|
| Q |
301 |
caaaaaccttgaatatactatcttgcggagagtaggttaggaccttggcattaacatcatcaaatttcacaacaaaagactctgactgaaaaagatcaaa |
400 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42535331 |
caaaaaccttgaatatactatcttgcgcagagtaggttaggaccttggcattaacatcatcaaatttcacaacaaaagactctgactgaaaaagatcaaa |
42535232 |
T |
|
| Q |
401 |
accggcatccggcttggccctccttatgtattcaatacttgttgatctgtatt |
453 |
Q |
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||||||||||||||||||||||||||||| |||||| | |||||||||||||| |
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| T |
42535231 |
accggcatccggcttggccctccttatgtcttcaatgcgtgttgatctgtatt |
42535179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 474
Target Start/End: Complemental strand, 42529912 - 42529436
Alignment:
| Q |
1 |
tcatgaactcagttctgcttaccgatggcataaccttaaaacttggtaagtcaagaatctgaaggttgacattgtcctgcatgactagtagcttttcgtt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||| | | |||| ||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| || |
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| T |
42529912 |
tcatgaactcagttctgcttactaccggcgtcagcttagaactttgtaagtcaagaatctgaaggttgacattgtcctgcttgactaaaagcttttcatt |
42529813 |
T |
|
| Q |
101 |
gca---cacaatcatgtcttcctccctattccaatgtagacaattgaattgtttgagaactttgccatcctcaatggatataatcttgactggaatatgg |
197 |
Q |
| |
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||| ||| || | |||| ||||| |||||||||||||| || |||||| |||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
42529812 |
gcattgcactatgaagtctacctccttattccaatgtagataactgaattctttgagaactaagccatcctcaatggatataatcttgattggaatatga |
42529713 |
T |
|
| Q |
198 |
tcacttgttcttttgaagatgaataacatgatgccagaagtgatgttgatccaatcaacattgctaaatgaaaacaagtatagaaaagtgtagtttttaa |
297 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42529712 |
tcacttcttctttggaagatgaataacatgatgccagaactgatgttgatccgttgaacattgctaaatgaaaacgagtatagaaaagtgtagtttttaa |
42529613 |
T |
|
| Q |
298 |
gatcaaaaaccttgaatatactatcttgcggagagtaggttaggaccttggcattaacatcatcaaatttcacaacaaaagactctgactgaaaaagatc |
397 |
Q |
| |
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| |||||||||||||| ||||||||||||| ||||||||||| ||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
42529612 |
ggtcaaaaaccttgaacatactatcttgcgcagagtaggttaagaccttgacattaacatcatcaaattttacaacaaaagaatctgactgaaaaagatc |
42529513 |
T |
|
| Q |
398 |
aaaaccggcatccggcttggccctccttatgtattcaatacttgttgatctgtatttccaagaactgagattcccat |
474 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42529512 |
aaaaccggcatccggcttggccctccttgtgtattcaatacttgttgatctgtatttccaagaactgagattcccat |
42529436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 537
Target Start/End: Complemental strand, 42535149 - 42535104
Alignment:
| Q |
492 |
gtaataaggcagtcattgttcttgttgtagaagaggctcttgatga |
537 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||| |||||| |
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| T |
42535149 |
gtaataagtgagtcattgttcttgttgtagaagagtctcctgatga |
42535104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 140 - 234
Target Start/End: Complemental strand, 27824691 - 27824597
Alignment:
| Q |
140 |
attgaattgtttgagaactttgccatcctcaatggatataatcttgactggaatatggtcacttgttcttttgaagatgaataacatgatgccag |
234 |
Q |
| |
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||||||| |||||||||| |||||||||||||||||||||| || | ||||||||| |||||| ||| ||||| || |||||||||||||||| |
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| T |
27824691 |
attgaatgctttgagaactgtgccatcctcaatggatataattttcagtggaatatgaccacttgctctattgaatattaataacatgatgccag |
27824597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 432 - 529
Target Start/End: Complemental strand, 27821993 - 27821896
Alignment:
| Q |
432 |
tcaatacttgttgatctgtatttccaagaactgagattcccatgaccgtaatcagacagcgtaataaggcagtcattgttcttgttgtagaagaggct |
529 |
Q |
| |
|
||||| |||||||||||| | ||| ||||||||| |||| || | | ||| |||||| |||||||| |||||||||||||||||||||||||||| |
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|
| T |
27821993 |
tcaatccttgttgatctgcacttcaaagaactgaaattctcagaagcataaacagacactgtaataagtgagtcattgttcttgttgtagaagaggct |
27821896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 318 - 431
Target Start/End: Complemental strand, 27822207 - 27822082
Alignment:
| Q |
318 |
ctatcttgcggagagtaggttaggaccttggcattaacatcatcaaatttcacaa---ca---------aaagactctgactgaaaaagatcaaaaccgg |
405 |
Q |
| |
|
||||| |||| |||||| ||||||||||| ||||||||||||||||||| ||||| || |||||||| ||||| |||||| |||||| | |
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| T |
27822207 |
ctatcctgcgcagagtatgttaggacctttgcattaacatcatcaaattccacaaatccaggccattttaaagactcggactggaaaagaggaaaaccag |
27822108 |
T |
|
| Q |
406 |
catccggcttggccctccttatgtat |
431 |
Q |
| |
|
||||||||||||||||| |||||||| |
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| T |
27822107 |
catccggcttggccctctttatgtat |
27822082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 319
Target Start/End: Complemental strand, 27822347 - 27822302
Alignment:
| Q |
274 |
agtatagaaaagtgtagtttttaagatcaaaaaccttgaatatact |
319 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||| ||||||| |
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|
| T |
27822347 |
agtatagcaaagtgtagtttttaagatcgaagaccttgtatatact |
27822302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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