View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0725_low_10 (Length: 267)
Name: NF0725_low_10
Description: NF0725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0725_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 32 - 244
Target Start/End: Complemental strand, 17728255 - 17728049
Alignment:
| Q |
32 |
cacactaaatcacacataagtatttggtctgatatccttcctgcagaaaatatgtagttacatgaagaagtgaattgcttagtgccattgatgagtacac |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17728255 |
cacactaaatcacacataagtatttggtctgatatccttcctgcagaaaatatgtagttacatgaagaagtgaattgcttagtgccattgatgagtacac |
17728156 |
T |
|
| Q |
132 |
tcaacttgaaatccaacaacatattgtctttatacataggaggttctccttctccagcacaacatagagctatctgagggaatttctttcgaaaccaaaa |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17728155 |
tcaacttgaaatccaacaacatattgtctttatgcataggaggtt------ctccagcacaacatagagctatctgagggaatttctttcgaaaccaaaa |
17728062 |
T |
|
| Q |
232 |
acataatgatgat |
244 |
Q |
| |
|
||||||||||||| |
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|
| T |
17728061 |
acataatgatgat |
17728049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 34 - 244
Target Start/End: Complemental strand, 17654675 - 17654471
Alignment:
| Q |
34 |
cactaaatcacacataagtatttggtctgatatccttcctgcagaaaatatgtagttacatgaagaagtgaattgcttagtgccattgatgagtacactc |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17654675 |
cactaaatcacacataagtatttggtctgatttgcttcctgcagaaaatatgtagttacatgaagaagtgaattgcttagtgccattgatgagtacactc |
17654576 |
T |
|
| Q |
134 |
aacttgaaatccaacaacatattgtctttatacataggaggttctccttctccagcacaacatagagctatctgagggaatttctttcgaaaccaaaaac |
233 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17654575 |
aacttgaaatccaacagcatattgtctttatacataggaggtt------ctccagcacaacatagagctatctgagggaatttctttcgaaaccaaaaac |
17654482 |
T |
|
| Q |
234 |
ataatgatgat |
244 |
Q |
| |
|
||||||||||| |
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|
| T |
17654481 |
ataatgatgat |
17654471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 52 - 242
Target Start/End: Complemental strand, 17708864 - 17708687
Alignment:
| Q |
52 |
tatttggtctgatatccttcctgcagaaaatatgtagttacatgaagaagtgaattgcttagtgccattgatgagtacactcaacttgaaatccaacaac |
151 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17708864 |
tatttggtctgatatccttcctgcagaaa-------gttacatgaagaagtgaatttcttagtgccattgatgagtacactcaacttgaaatccaacaac |
17708772 |
T |
|
| Q |
152 |
atattgtctttatacataggaggttctccttctccagcacaacatagagctatctgagggaatttctttcgaaaccaaaaacataatgatg |
242 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17708771 |
atattgtctttatacataggaggtt------ctccagcacaacatagagctatctgagggaatttctttcgaaaccaaaaacataatgatg |
17708687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 74 - 178
Target Start/End: Complemental strand, 17715625 - 17715521
Alignment:
| Q |
74 |
gcagaaaatatgtagttacatgaagaagtgaattgcttagtgccattgatgagtacactcaacttgaaatccaacaacatattgtctttatacataggag |
173 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
17715625 |
gcagaaaatatgtagttgcatgaagaagtgaattgctcagtgccattgatgagaacactcaacttgaaatccaacaacatattgtctttacacacaggag |
17715526 |
T |
|
| Q |
174 |
gttct |
178 |
Q |
| |
|
||||| |
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|
| T |
17715525 |
gttct |
17715521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 74 - 244
Target Start/End: Complemental strand, 17646025 - 17645861
Alignment:
| Q |
74 |
gcagaaaatatgtagttacatgaagaagtgaattgcttagtgccattgatgagtacactcaacttgaaatccaacaacatattgtctttatacataggag |
173 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
17646025 |
gcagaaaatatgtagttgcatgaagaagtgaattgctcagtgccattgatgagaacacttaacttgaaatccaacaacatattgtctttacacacaggag |
17645926 |
T |
|
| Q |
174 |
gttctccttctccagcacaacatagagctatctgagggaatttctttcgaaaccaaaaacataatgatgat |
244 |
Q |
| |
|
| |||| |||||||||| |||| |||| |||||||| ||| |||||||||||| ||| |||||| |
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|
| T |
17645925 |
g------ttctacagcacaacacagagttatcctggggaatttattttgaaaccaaaaacgtaaggatgat |
17645861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 74 - 244
Target Start/End: Complemental strand, 17664899 - 17664735
Alignment:
| Q |
74 |
gcagaaaatatgtagttacatgaagaagtgaattgcttagtgccattgatgagtacactcaacttgaaatccaacaacatattgtctttatacataggag |
173 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
17664899 |
gcagaaaatatgtagttgcatgaagaagtgaattgctcagtgccattgataagaacactcaacttgaaatccaacaacatattgtctttacacacaggag |
17664800 |
T |
|
| Q |
174 |
gttctccttctccagcacaacatagagctatctgagggaatttctttcgaaaccaaaaacataatgatgat |
244 |
Q |
| |
|
| |||| |||||||||| ||||||||| |||||||| ||| |||||||||| | ||| |||||| |
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|
| T |
17664799 |
g------ttctacagcacaacacagagctatcctggggaatttattttgaaaccaaaatcgtaaggatgat |
17664735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 74 - 244
Target Start/End: Complemental strand, 17620412 - 17620248
Alignment:
| Q |
74 |
gcagaaaatatgtagttacatgaagaagtgaattgcttagtgccattgatgagtacactcaacttgaaatccaacaacatattgtctttatacataggag |
173 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
17620412 |
gcagaaaacatgtagttgcatgaagaagtgaattgcttagtgccattgatgagaacacttaaattgaaatccaacaacatattgtctttacacacaggag |
17620313 |
T |
|
| Q |
174 |
gttctccttctccagcacaacatagagctatctgagggaatttctttcgaaaccaaaaacataatgatgat |
244 |
Q |
| |
|
| |||| |||||||||| ||||||||| |||||||| ||| |||||||||| | ||| |||||| |
|
|
| T |
17620312 |
g------ttctacagcacaacacagagctatcctggggaatttattttgaaaccaaaatcgtaaggatgat |
17620248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 37 - 232
Target Start/End: Complemental strand, 17702256 - 17702067
Alignment:
| Q |
37 |
taaatcacacataagtatttggtctgatatccttcctgcagaaaatatgtagttacatgaagaagtgaattgcttagtgccattgatgagtacactcaac |
136 |
Q |
| |
|
||||||||||||||| | ||| || | ||| || | |||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| || |
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|
| T |
17702256 |
taaatcacacataagaacttgttcagttattttttcagcagaaaacatgtagttgcatgaagaagtgaattgcttagtgccattgatgagcacactgaaa |
17702157 |
T |
|
| Q |
137 |
ttgaaatccaacaacatattgtctttatacataggaggttctccttctccagcacaacatagagctatctgagggaatttctttcgaaaccaaaaa |
232 |
Q |
| |
|
||||||||||||||||||||| ||||| ||| |||||| || | |||||||||| ||||| |||| |||||||| ||| ||||||||||| |
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|
| T |
17702156 |
ttgaaatccaacaacatattgcctttacacacaggagg------ttttacagcacaacaaagagcaatcttggggaatttattttgaaaccaaaaa |
17702067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 17721746 - 17721663
Alignment:
| Q |
49 |
aagtatttggtctgatatccttcctgcagaaaatatgtagttacatgaagaagtgaattgcttagtgccattgatgagtacact |
132 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| || |||| |||| |||| ||||| |
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|
| T |
17721746 |
aagtatttgatctgatatccttcctggagaaaatatgtagttacatgaagaagtggatttctcagtgtgattgttgagaacact |
17721663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 5980633 - 5980713
Alignment:
| Q |
78 |
aaaatatgtagttacatgaagaagtgaattgcttagtgccattgatgagtacactcaacttgaaatccaacaacatattgt |
158 |
Q |
| |
|
|||||||||| | |||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||| ||| |||| |
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|
| T |
5980633 |
aaaatatgtattgacatgaagaagtgagttgcttagtgccattgatgagtacgttcagcttgaaatccaacaccatgttgt |
5980713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 5877517 - 5877585
Alignment:
| Q |
91 |
acatgaagaagtgaattgcttagtgccattgatgagtacactcaacttgaaatccaacaacatattgtc |
159 |
Q |
| |
|
|||||||| || || ||||||||||||||||||||||||| |||||||||||||||| | ||||||||| |
|
|
| T |
5877517 |
acatgaagtagagagttgcttagtgccattgatgagtacattcaacttgaaatccaaaaccatattgtc |
5877585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 5914880 - 5914945
Alignment:
| Q |
81 |
atatgtagttacatgaagaagtgaattgcttagtgccattgatgagtacactcaacttgaaatcca |
146 |
Q |
| |
|
||||||| | |||||||| || || ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5914880 |
atatgtattcacatgaagtagagagttgcttagtgccattgatgagtacattcaacttgaaatcca |
5914945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 5902136 - 5902192
Alignment:
| Q |
93 |
atgaagaagtgaattgcttagtgccattgatgagtacactcaacttgaaatccaaca |
149 |
Q |
| |
|
|||||| || || ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5902136 |
atgaagtagagagttgcttagtgccattgatgagtacattcaacttgaaatccaaca |
5902192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 5974643 - 5974714
Alignment:
| Q |
78 |
aaaatatgtagttacatgaagaagtgaattgcttagtgccattgatgagtacactcaacttgaaatccaaca |
149 |
Q |
| |
|
|||||||||| |||||||||||||||| || ||||||||||||||||||| | |||| |||||||| |||| |
|
|
| T |
5974643 |
aaaatatgtatttacatgaagaagtgagtttattagtgccattgatgagtagattcaatttgaaatctaaca |
5974714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 5971772 - 5971841
Alignment:
| Q |
78 |
aaaatatgtagttacatgaagaagtgaattgcttagtgccattgatgagtacactcaacttgaaatccaa |
147 |
Q |
| |
|
|||||||||| | |||||||||| | | ||||| ||||||||||||||||| | ||||||| |||||||| |
|
|
| T |
5971772 |
aaaatatgtattcacatgaagaaataagttgctcagtgccattgatgagtatattcaacttaaaatccaa |
5971841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 159
Target Start/End: Original strand, 5921207 - 5921294
Alignment:
| Q |
72 |
ctgcagaaaatatgtagttacatgaagaagtgaattgcttagtgccattgatgagtacactcaacttgaaatccaacaacatattgtc |
159 |
Q |
| |
|
||||| ||||||||||| |||||||||||| | |||||||| ||||| | ||||||| | ||||| |||||||||| ||| ||||| |
|
|
| T |
5921207 |
ctgcataaaatatgtagacacatgaagaagtaaggtgcttagtaccattaacgagtacattgaacttaaaatccaacaccatgttgtc |
5921294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 4203628 - 4203708
Alignment:
| Q |
78 |
aaaatatgtagttacatgaagaagtgaattgcttagtgccattgatgagtacactcaacttgaaatccaacaacatattgt |
158 |
Q |
| |
|
|||||||||| | ||| |||| || || |||||||||||| ||||||| |||| | ||||||| ||||| || |||||||| |
|
|
| T |
4203628 |
aaaatatgtattcacacgaagtagagagttgcttagtgccgttgatgactacattgaacttgacatccagcaccatattgt |
4203708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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