View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0725_low_12 (Length: 251)

Name: NF0725_low_12
Description: NF0725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0725_low_12
NF0725_low_12
[»] chr5 (9 HSPs)
chr5 (11-168)||(6796584-6796741)
chr5 (182-251)||(13739546-13739615)
chr5 (182-235)||(21575637-21575690)
chr5 (182-251)||(26009134-26009202)
chr5 (182-246)||(16967370-16967434)
chr5 (182-251)||(16594271-16594337)
chr5 (182-236)||(25603560-25603614)
chr5 (193-251)||(27546440-27546497)
chr5 (182-246)||(5899779-5899843)
[»] chr6 (6 HSPs)
chr6 (180-243)||(10729689-10729752)
chr6 (180-251)||(28982531-28982602)
chr6 (182-251)||(34383750-34383819)
chr6 (200-251)||(2204313-2204364)
chr6 (180-251)||(5456740-5456811)
chr6 (182-241)||(354391-354450)
[»] chr3 (16 HSPs)
chr3 (180-236)||(37143226-37143282)
chr3 (180-246)||(31664722-31664788)
chr3 (182-251)||(31350498-31350567)
chr3 (180-251)||(31425640-31425711)
chr3 (184-251)||(46114255-46114322)
chr3 (180-246)||(31930925-31930991)
chr3 (182-251)||(49875904-49875972)
chr3 (180-251)||(15927485-15927556)
chr3 (182-245)||(41610431-41610494)
chr3 (182-246)||(33976286-33976350)
chr3 (182-251)||(1291625-1291694)
chr3 (182-235)||(50886520-50886573)
chr3 (180-236)||(50886315-50886371)
chr3 (182-231)||(34608229-34608278)
chr3 (182-251)||(43898673-43898742)
chr3 (184-251)||(36639211-36639278)
[»] chr7 (8 HSPs)
chr7 (182-251)||(2819363-2819432)
chr7 (182-251)||(12651214-12651283)
chr7 (180-230)||(48591154-48591204)
chr7 (182-251)||(18736112-18736180)
chr7 (182-246)||(44255789-44255853)
chr7 (182-224)||(11778715-11778757)
chr7 (182-235)||(17117050-17117103)
chr7 (182-251)||(19223556-19223625)
[»] chr4 (6 HSPs)
chr4 (182-235)||(54128172-54128225)
chr4 (182-251)||(3698423-3698492)
chr4 (182-246)||(4700013-4700077)
chr4 (182-225)||(4272460-4272503)
chr4 (182-233)||(23719413-23719464)
chr4 (182-235)||(54342908-54342961)
[»] chr1 (8 HSPs)
chr1 (180-245)||(46859546-46859611)
chr1 (182-251)||(5466227-5466296)
chr1 (182-251)||(38762208-38762277)
chr1 (180-251)||(36775215-36775286)
chr1 (182-231)||(4604741-4604790)
chr1 (182-245)||(49660083-49660146)
chr1 (180-246)||(18982618-18982684)
chr1 (182-251)||(38289674-38289743)
[»] chr8 (6 HSPs)
chr8 (182-245)||(12171982-12172045)
chr8 (182-245)||(12416410-12416473)
chr8 (189-251)||(40649574-40649636)
chr8 (182-242)||(44952746-44952806)
chr8 (182-231)||(7612101-7612150)
chr8 (182-251)||(12946520-12946589)
[»] scaffold0481 (1 HSPs)
scaffold0481 (182-251)||(1093-1162)
[»] chr2 (1 HSPs)
chr2 (182-251)||(41317307-41317376)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 6796741 - 6796584
Alignment:
Q  11 agaatatcccacaaaccaacaagtaatgcgaacaaatagaaaaacatacaaaagaaaacacaagtttacttcatatcaatgttttaaaaatcggacgaaa 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6796741 agaaaatcccacaaaccaacaagtaatgcgaacaaatagaaaaacatacaaaagaaaacacaagtttacttcatatcaatgttttaaaaatcggacgaaa 6796642  T
Q  111 gatcaaactattgagacctctggaggtcatggtttaattagttcaaaagtggttgaac 168  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6796641 gatcaaactattgagacctctagaggtcatggtttaattagttcaaaagtggttgaac 6796584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 13739615 - 13739546
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    ||||||||||||||||| || || ||||||||||||| |||||||||||| ||  |||||||||| ||||    
T  13739615 aatgatattttgacaaccaactttaaacaacttttagggacaaccttttttcttcctttttattggacaa 13739546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 21575637 - 21575690
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctc 235  Q
    ||||||||||||||||| ||||| ||||||| |||||||||||| |||||||||    
T  21575637 aatgatattttgacaaccaattttaaacaacatttagtgacaacatttttcctc 21575690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 26009134 - 26009202
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    ||||||||||||||||  ||||| ||||||||||||||||||||| ||||||||| || |||||| ||||    
T  26009134 aatgatattttgacaatcaattttaaacaacttttagtgacaacc-ttttcctcttttcttattggacaa 26009202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 16967370 - 16967434
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattg 246  Q
    ||||||||||||||| |||||||  |||||||||||| |||||| |||||||||| || ||||||    
T  16967370 aatgatattttgacatctaattttcaacaacttttagggacaacatttttcctctattcttattg 16967434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 16594271 - 16594337
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    ||||||||||||||||| ||||||   ||| ||||||||||||| | |||||||||||||||||| ||||    
T  16594271 aatgatattttgacaaccaatttc---caatttttagtgacaacttatttcctctctttttattggacaa 16594337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 25603560 - 25603614
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctct 236  Q
    ||||||||||||||||| |||||| ||||| ||||||||| ||| ||||||||||    
T  25603560 aatgatattttgacaaccaatttctaacaatttttagtgataacatttttcctct 25603614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 27546497 - 27546440
Alignment:
Q  193 gacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    |||||| ||||| |||||| |||| |||||||| ||||||||||||||| |||||||||    
T  27546497 gacaaccaattttaaacaa-ttttcgtgacaacttttttcctctcttttcattgaacaa 27546440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 5899779 - 5899843
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacc-tttttcctctctttttattg 246  Q
    ||||||||||||||||| ||  |||||||| |||||||||| ||| ||||||||||||| ||||||    
T  5899779 aatgatattttgacaaccaaaatcaaacaa-ttttagtgactaccttttttcctctcttcttattg 5899843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 10729752 - 10729689
Alignment:
Q  180 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctcttttta 243  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  10729752 gtaatgatattttgacaaccaatttccaacaacttttagtgacaacctttttcctctcttttta 10729689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 28982531 - 28982602
Alignment:
Q  180 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    ||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||| ||||    
T  28982531 gtaatgatattttgacaaccaattttcaacaacttttagtgacaacctttttcctctctttttattggacaa 28982602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 34383750 - 34383819
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    ||||||||||||||| | |||||| |||||||||||||||||||| ||||||||||||||||||| ||||    
T  34383750 aatgatattttgacatccaatttctaacaacttttagtgacaacccttttcctctctttttattggacaa 34383819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 2204313 - 2204364
Alignment:
Q  200 aatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  2204313 aatttccaacaacttttagtgacaacctttttcctctctttttattggacaa 2204364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 5456740 - 5456811
Alignment:
Q  180 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    ||||||||||||||||||| |||||| ||||||||||||||| ||| ||||| | |||||||||||| ||||    
T  5456740 gtaatgatattttgacaaccaatttccaacaacttttagtgataacattttttcgctctttttattggacaa 5456811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 354450 - 354391
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttt 241  Q
    ||||||||||||||||| |||||| |||||||||||  || ||  |||||||||||||||    
T  354450 aatgatattttgacaaccaatttccaacaacttttaaggataatttttttcctctctttt 354391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 37143282 - 37143226
Alignment:
Q  180 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctct 236  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37143282 gtaatgatattttgacaactaatttccaacaacttttagtgacaacctttttcctct 37143226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 31664788 - 31664722
Alignment:
Q  180 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattg 246  Q
    ||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||| ||||    
T  31664788 gtaatgatattttgacaaccaatttccaacaacttttagtgataacctttttcctctcttttcattg 31664722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 31350498 - 31350567
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| ||||| |||||||||||||| ||||    
T  31350498 aatgatattttgacaaccaatttccaacaacttttagtgacaactttttttctctctttttattggacaa 31350567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 31425711 - 31425640
Alignment:
Q  180 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    |||||||||||||||||||||||||  || || ||||| |||||||||||||||||||||||||||| ||||    
T  31425711 gtaatgatattttgacaactaattttcaataatttttaatgacaacctttttcctctctttttattggacaa 31425640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 46114255 - 46114322
Alignment:
Q  184 tgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    ||||||||||||||  |||||| |||||||||| ||||||||||||||||||||||| ||||||||||    
T  46114255 tgatattttgacaatcaatttccaacaacttttggtgacaacctttttcctctctttctattgaacaa 46114322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 31930925 - 31930991
Alignment:
Q  180 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattg 246  Q
    ||||||||||||||||||| |||||| ||||| ||||||||| ||||||||||||||||||| ||||    
T  31930925 gtaatgatattttgacaaccaatttccaacaaattttagtgataacctttttcctctcttttcattg 31930991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 49875972 - 49875904
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    ||||||||||||||||| |||||| ||||||||||||||||||  ||||||||||||||| |||| ||||    
T  49875972 aatgatattttgacaaccaatttccaacaacttttagtgacaa-ttttttcctctcttttcattggacaa 49875904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 15927485 - 15927556
Alignment:
Q  180 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    ||||||||||||||||||| |||||| || || ||||||||||||| ||||| | |||||||||||| ||||    
T  15927485 gtaatgatattttgacaaccaatttccaataatttttagtgacaactttttttcgctctttttattggacaa 15927556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 41610494 - 41610431
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttatt 245  Q
    |||||||||||||| || ||||| ||||||||| |||||||||| ||||| |||||||||||||    
T  41610494 aatgatattttgactacaaattttaaacaacttctagtgacaacattttttctctctttttatt 41610431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 33976286 - 33976350
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattg 246  Q
    |||||||||||||||  ||||||  ||||| |||||||||||||  |||||||||||||||||||    
T  33976286 aatgatattttgacatttaattttcaacaatttttagtgacaacacttttcctctctttttattg 33976350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 1291694 - 1291625
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    |||||||||||||||||||| ||  ||||| ||||||||| || ||||||| |||||||| |||| ||||    
T  1291694 aatgatattttgacaactaaattttaacaatttttagtgataatctttttcttctcttttaattggacaa 1291625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 50886573 - 50886520
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctc 235  Q
    ||||||||||||||||| ||||| | ||||||||  ||||||||||||||||||    
T  50886573 aatgatattttgacaaccaattttagacaactttgggtgacaacctttttcctc 50886520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 50886371 - 50886315
Alignment:
Q  180 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctct 236  Q
    ||||||||||||||||||  |||||  ||||||||| ||||||||| ||||||||||    
T  50886371 gtaatgatattttgacaatcaattttcaacaactttcagtgacaacgtttttcctct 50886315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 34608278 - 34608229
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaaccttttt 231  Q
    |||||||||||||||| |||||| ||||||||||||| || || ||||||    
T  34608278 aatgatattttgacaattaattttaaacaacttttagggataatcttttt 34608229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 43898742 - 43898673
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    ||||||||||||||||| | ||| |||||||||| | ||||||| ||||| || |||| |||||| ||||    
T  43898742 aatgatattttgacaacaatttttaaacaactttcattgacaactttttttctatcttcttattggacaa 43898673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 36639278 - 36639211
Alignment:
Q  184 tgatattttgacaactaatttcaaacaacttttagtgacaac-ctttttcctctctttttattgaacaa 251  Q
    |||||||| |||||| ||||||||||||| ||||| ||||||  |||||||||||||| ||||| ||||    
T  36639278 tgatatttggacaaccaatttcaaacaac-tttagggacaacattttttcctctctttctattggacaa 36639211  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 2819432 - 2819363
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    ||||||||||||||||| |||||  ||||| |||||||||||||||||||||||||||||||||| ||||    
T  2819432 aatgatattttgacaaccaattttcaacaatttttagtgacaacctttttcctctctttttattggacaa 2819363  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 12651214 - 12651283
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    ||||||||||||||||| |||||| |||||||||| |||||||| |||||||||| ||| ||||| ||||    
T  12651214 aatgatattttgacaaccaatttccaacaacttttggtgacaacttttttcctctttttctattggacaa 12651283  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 48591154 - 48591204
Alignment:
Q  180 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttt 230  Q
    ||||||||||||||||||| |||||| |||||||||  |||||||||||||    
T  48591154 gtaatgatattttgacaaccaatttccaacaactttgggtgacaacctttt 48591204  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 18736180 - 18736112
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    ||||||||||||| || |||||| |||||| |||||||||||||  ||||||||| ||||||||| ||||    
T  18736180 aatgatattttgataaataattttaaacaatttttagtgacaactcttttcctct-tttttattggacaa 18736112  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 44255789 - 44255853
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattg 246  Q
    ||||||||||||||||  ||||| ||| ||||||||| |||||||||||| ||  ||||||||||    
T  44255789 aatgatattttgacaatcaattttaaataacttttagggacaaccttttttcttcctttttattg 44255853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 11778757 - 11778715
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaa 224  Q
    ||||||||||||||||| ||||| ||||||||||||| |||||    
T  11778757 aatgatattttgacaaccaattttaaacaacttttagggacaa 11778715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 17117050 - 17117103
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctc 235  Q
    ||||||||||||||||| ||||| | |||| |||  ||||||||||||||||||    
T  17117050 aatgatattttgacaaccaattttagacaattttgggtgacaacctttttcctc 17117103  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 19223625 - 19223556
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    ||||||||||||||||  |||||  || || ||||| ||||||  |||||||||||||||||||| ||||    
T  19223625 aatgatattttgacaatcaattttcaataatttttaatgacaatttttttcctctctttttattggacaa 19223556  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 54128225 - 54128172
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctc 235  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  54128225 aatgatattttgacaaccaattttaaacaacttttagtgacaacctttttcctc 54128172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 3698492 - 3698423
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    ||||||||||  | |||||||||| ||||| ||||||||||||| |||||||||||||||||||| ||||    
T  3698492 aatgatatttgcataactaatttccaacaatttttagtgacaacttttttcctctctttttattggacaa 3698423  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 4700013 - 4700077
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattg 246  Q
    |||||||||||||||| |||||| |||||||||||||||| ||  ||||||||||  ||||||||    
T  4700013 aatgatattttgacaattaattttaaacaacttttagtgataatttttttcctcttattttattg 4700077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 4272460 - 4272503
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaac 225  Q
    ||||||||||||||||| |||||| |||||||||||||||||||    
T  4272460 aatgatattttgacaaccaatttccaacaacttttagtgacaac 4272503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 23719413 - 23719464
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcc 233  Q
    ||||||||||||||||| ||||| |||||||||| | |||||||||||||||    
T  23719413 aatgatattttgacaaccaatttgaaacaactttgaatgacaacctttttcc 23719464  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 54342961 - 54342908
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctc 235  Q
    |||||||| |||||||| ||||| ||||||||||  ||||||||||| ||||||    
T  54342961 aatgatatcttgacaaccaattttaaacaactttgggtgacaaccttgttcctc 54342908  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 46859611 - 46859546
Alignment:
Q  180 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttatt 245  Q
    |||||||||||| |||||| |||||| |||||||||||||||||  ||||||||||||||||||||    
T  46859611 gtaatgatatttagacaaccaatttccaacaacttttagtgacagtctttttcctctctttttatt 46859546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 5466227 - 5466296
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    ||||||||||||||||| ||||| ||||||||||  |||||||||||||||||| ||| |||||| ||||    
T  5466227 aatgatattttgacaaccaattttaaacaactttgggtgacaacctttttcctcacttcttattggacaa 5466296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 38762208 - 38762277
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    ||||||||||||||||| ||||| ||||||||||||| |||||||||||| ||  ||| |||||||||||    
T  38762208 aatgatattttgacaaccaattttaaacaacttttagggacaaccttttttcttccttcttattgaacaa 38762277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 36775286 - 36775215
Alignment:
Q  180 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    ||||| ||||||||||||| |||||| |||||||||  |||||||||||||| |||| ||||||||| ||||    
T  36775286 gtaataatattttgacaaccaatttccaacaactttgggtgacaaccttttttctctttttttattggacaa 36775215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 4604790 - 4604741
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaaccttttt 231  Q
    ||||||||||||||||| ||||| ||||||||||||| |||||| |||||    
T  4604790 aatgatattttgacaaccaatttaaaacaacttttagggacaactttttt 4604741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 49660146 - 49660083
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttatt 245  Q
    ||||||||||||||| | |||| |||||||||||  |||||||| |||||||||| || |||||    
T  49660146 aatgatattttgacatccaattccaaacaactttgggtgacaacttttttcctctattcttatt 49660083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 18982684 - 18982618
Alignment:
Q  180 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattg 246  Q
    ||||||||||||||| ||| |||||| |||||||||  |||||||| |||||  ||| |||||||||    
T  18982684 gtaatgatattttgataaccaatttccaacaactttgggtgacaacattttttatctttttttattg 18982618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 38289743 - 38289674
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    ||||||||||||||| | |||||  |||||||||||| |||||| ||||| |||| || |||||| ||||    
T  38289743 aatgatattttgacatcaaattttcaacaacttttagagacaactttttttctctattcttattggacaa 38289674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 12171982 - 12172045
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttatt 245  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||||||||||||| ||| |||||    
T  12171982 aatgatattttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatt 12172045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 12416410 - 12416473
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttatt 245  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||||||||||||| ||| |||||    
T  12416410 aatgatattttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatt 12416473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 40649636 - 40649574
Alignment:
Q  189 ttttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    |||||||||| |||||  ||||| |||||||||||||||||||||||| ||||||||| ||||    
T  40649636 ttttgacaaccaattttcaacaatttttagtgacaacctttttcctctatttttattggacaa 40649574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 44952806 - 44952746
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctcttttt 242  Q
    ||||||||||||||||  |||||| ||||| |||||||||||| |||||| ||||||||||    
T  44952806 aatgatattttgacaatcaatttctaacaatttttagtgacaatcttttttctctcttttt 44952746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 7612101 - 7612150
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaaccttttt 231  Q
    ||||||||||||||||| ||||| ||||||||||||| ||||| ||||||    
T  7612101 aatgatattttgacaaccaattttaaacaacttttagggacaatcttttt 7612150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 12946520 - 12946589
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    ||||||||||||||| | |||||  |||||||||| | |||||| ||||| |||| ||||||||||||||    
T  12946520 aatgatattttgacatccaattttcaacaactttttgggacaactttttttctctatttttattgaacaa 12946589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 1093 - 1162
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    ||||||||||||||||| ||||| ||||||||||  |||||||||||||||||| ||| |||||| ||||    
T  1093 aatgatattttgacaaccaattttaaacaactttgggtgacaacctttttcctcacttcttattggacaa 1162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 41317376 - 41317307
Alignment:
Q  182 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaa 251  Q
    ||||||||||||||| | |||||  |||||||||| | ||||| |||||| |||| || |||||||||||    
T  41317376 aatgatattttgacatccaattttcaacaactttttgggacaatcttttttctctattcttattgaacaa 41317307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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