View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0725_low_6 (Length: 345)
Name: NF0725_low_6
Description: NF0725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0725_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 6 - 327
Target Start/End: Complemental strand, 34082563 - 34082242
Alignment:
| Q |
6 |
agattattctcagagattccggtgggagctggtgatctttgattttggtataatgattagataaagtttatccctctttgttgccaatttccatatgttg |
105 |
Q |
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| T |
34082563 |
agattattctcagagattccggtgggagctggtgatctttgattttggtataatgattagataaagtttatccctctttgttgccaagttccatatgttg |
34082464 |
T |
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| Q |
106 |
acatccatgatgttgaagtttacggtcaaggatttgattgaagataatgtgctcactttgcagtccttgctcccaatctttctgacgttgtcttttaact |
205 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34082463 |
acatccatgatgttaaagtttacggtcaaggatttgattgaagataatgtgctcactctgcagtccttgctcccaatttttctgacgttgtcttttaact |
34082364 |
T |
|
| Q |
206 |
tggcatttggctgaaaaatgttaatgaaaacctacacaaatgaagctaaattctaatcttgaaaatggtacacaaataaagctaaattctcatttggtta |
305 |
Q |
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| T |
34082363 |
tggcatttggctgaaaaatgttaatgaaaacctacacaaatgaagctaaattctaatcttgaaaatggtacacaaataaagctaaattctcatttggtta |
34082264 |
T |
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| Q |
306 |
gcatgccatgatgatgatgtcc |
327 |
Q |
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| T |
34082263 |
gcatgccatgatgatgatgtcc |
34082242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 6 - 187
Target Start/End: Original strand, 29796479 - 29796655
Alignment:
| Q |
6 |
agattattctcagagattccggtgggagctggtgatctttgattttggtataatgattagataaagtttatccctctttgttgccaatttccatatgttg |
105 |
Q |
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| T |
29796479 |
agattattctcagagattccggtaggagctagtgatctttgattttggtataatgattggataaagtttatccctcttagttgccaagttccat-tgttg |
29796577 |
T |
|
| Q |
106 |
acatccatgatgttgaagtttacggtcaaggatttgattgaagataatgtgctcactttgcagtccttgctcccaatctttc |
187 |
Q |
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| ||||||||||||||| | |||||| |||||||||||||||||||||||| || ||||||||||||||||||| |||| |
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| T |
29796578 |
a----catgatgttgaagttcatggtcaaagatttgattgaagataatgtgctctctctgcagtccttgctcccaatttttc |
29796655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 209 - 289
Target Start/End: Original strand, 29796725 - 29796804
Alignment:
| Q |
209 |
catttggctgaaaaatgttaatgaaaacctacacaaatgaagctaaattctaatcttgaaaatggtacacaaataaagcta |
289 |
Q |
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| T |
29796725 |
catttggctggaaaatgttaatggag-cctacacaaatgaagctaaattctaattttgaaaatggtacacaaataaggcta |
29796804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 321
Target Start/End: Original strand, 29796830 - 29796859
Alignment:
| Q |
292 |
ttctcatttggttagcatgccatgatgatg |
321 |
Q |
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| T |
29796830 |
ttctcatttggttagcatgccatgatgatg |
29796859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 28968147 - 28968300
Alignment:
| Q |
8 |
attattctcagagattccggtgggagctggtgatctttgattttggtataatgattagataaagtttatccctctttgttgccaatttcc---atatgtt |
104 |
Q |
| |
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||||||||||||||||| ||| |||||||||||||||| |||||||||||| |||| |||| ||||| ||| ||||||| ||| |||| ||||||| |
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| T |
28968147 |
attattctcagagattcaggtaggagctggtgatctttaattttggtataaggattggatagagtttgcccccctttgttaccaggttccataatatgtt |
28968246 |
T |
|
| Q |
105 |
gacatccatgatgttgaagtttacggtcaaggatttgattgaagataatgtgctca |
160 |
Q |
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||||||||||||||||||||| | |||||||||||||||||| ||||| |||||| |
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| T |
28968247 |
gacatccatgatgttgaagttaa--gtcaaggatttgattgaaaataatatgctca |
28968300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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