View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0725_low_7 (Length: 319)

Name: NF0725_low_7
Description: NF0725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0725_low_7
NF0725_low_7
[»] scaffold0298 (1 HSPs)
scaffold0298 (15-227)||(274-487)
[»] chr7 (34 HSPs)
chr7 (15-227)||(831800-832012)
chr7 (15-227)||(1196980-1197192)
chr7 (15-227)||(34958234-34958447)
chr7 (134-227)||(4690917-4691011)
chr7 (134-227)||(47095154-47095248)
chr7 (134-227)||(18079554-18079648)
chr7 (134-227)||(43745358-43745452)
chr7 (137-228)||(20252446-20252538)
chr7 (134-219)||(15575905-15575991)
chr7 (139-219)||(18874922-18875003)
chr7 (15-82)||(37727007-37727074)
chr7 (78-140)||(20252195-20252257)
chr7 (76-141)||(43745632-43745697)
chr7 (76-138)||(708440-708502)
chr7 (76-141)||(15575660-15575725)
chr7 (76-141)||(19195588-19195652)
chr7 (16-82)||(42041987-42042053)
chr7 (21-82)||(14153047-14153108)
chr7 (76-141)||(47095428-47095493)
chr7 (76-140)||(4690674-4690738)
chr7 (76-140)||(8513764-8513828)
chr7 (76-127)||(38299738-38299789)
chr7 (134-177)||(48212984-48213027)
chr7 (76-130)||(16250233-16250287)
chr7 (165-226)||(19067535-19067597)
chr7 (15-80)||(15726150-15726215)
chr7 (134-175)||(19070012-19070053)
chr7 (76-140)||(8488105-8488169)
chr7 (192-227)||(48213028-48213063)
chr7 (151-227)||(3192149-3192227)
chr7 (79-133)||(15700897-15700951)
chr7 (79-138)||(18874679-18874740)
chr7 (134-183)||(16383825-16383874)
chr7 (76-140)||(43276755-43276818)
[»] scaffold0180 (1 HSPs)
scaffold0180 (14-227)||(10485-10698)
[»] chr4 (24 HSPs)
chr4 (15-227)||(15747723-15747935)
chr4 (15-220)||(17142918-17143124)
chr4 (134-227)||(2424643-2424737)
chr4 (134-227)||(14630839-14630933)
chr4 (134-227)||(26445909-26446003)
chr4 (134-223)||(10237326-10237416)
chr4 (76-141)||(25513827-25513892)
chr4 (15-82)||(14035562-14035629)
chr4 (76-143)||(9638984-9639051)
chr4 (76-141)||(16296914-16296979)
chr4 (177-227)||(16025917-16025968)
chr4 (79-141)||(14631111-14631173)
chr4 (79-140)||(33186880-33186941)
chr4 (76-141)||(35660932-35660997)
chr4 (76-140)||(12424301-12424367)
chr4 (78-141)||(26446183-26446246)
chr4 (134-183)||(15213681-15213730)
chr4 (25-82)||(30147760-30147817)
chr4 (134-183)||(54363351-54363400)
chr4 (196-227)||(25513681-25513712)
chr4 (22-75)||(14049429-14049483)
chr4 (169-223)||(19081221-19081274)
chr4 (79-128)||(15239830-15239879)
chr4 (134-183)||(19622239-19622288)
[»] chr8 (22 HSPs)
chr8 (15-227)||(38184862-38185075)
chr8 (119-227)||(20494554-20494663)
chr8 (75-162)||(18023566-18023653)
chr8 (134-220)||(22366099-22366186)
chr8 (134-227)||(21514393-21514487)
chr8 (134-219)||(4380865-4380951)
chr8 (134-227)||(22723274-22723368)
chr8 (134-206)||(18816551-18816624)
chr8 (76-141)||(18816306-18816371)
chr8 (76-140)||(22208246-22208310)
chr8 (161-227)||(24907917-24907986)
chr8 (76-141)||(21514667-21514732)
chr8 (76-140)||(22483763-22483827)
chr8 (21-78)||(21860706-21860764)
chr8 (79-141)||(36732426-36732488)
chr8 (76-141)||(4380628-4380693)
chr8 (190-227)||(18023647-18023684)
chr8 (79-143)||(22258320-22258384)
chr8 (77-141)||(22483914-22483978)
chr8 (15-66)||(15635261-15635312)
chr8 (18-79)||(22920142-22920203)
chr8 (134-183)||(24239756-24239805)
[»] chr3 (22 HSPs)
chr3 (15-227)||(2247816-2248029)
chr3 (134-227)||(24546902-24546996)
chr3 (134-227)||(24549207-24549301)
chr3 (139-227)||(25104036-25104125)
chr3 (134-219)||(17208234-17208320)
chr3 (134-219)||(14520156-14520242)
chr3 (76-141)||(17208500-17208565)
chr3 (76-140)||(14152410-14152474)
chr3 (20-78)||(1988306-1988364)
chr3 (76-141)||(45803342-45803407)
chr3 (76-130)||(22841290-22841344)
chr3 (80-137)||(5215627-5215684)
chr3 (76-141)||(14641559-14641624)
chr3 (76-141)||(29907615-29907680)
chr3 (76-141)||(29948781-29948846)
chr3 (76-141)||(29997935-29998000)
chr3 (76-140)||(15566721-15566785)
chr3 (76-141)||(14520422-14520487)
chr3 (134-183)||(17758665-17758714)
chr3 (134-183)||(19059985-19060034)
chr3 (76-141)||(12917317-12917382)
chr3 (134-183)||(40038987-40039036)
[»] chr5 (14 HSPs)
chr5 (134-227)||(18744583-18744677)
chr5 (134-227)||(1627324-1627418)
chr5 (134-220)||(660499-660586)
chr5 (134-219)||(23199463-23199549)
chr5 (76-140)||(18744851-18744915)
chr5 (76-140)||(23199218-23199282)
chr5 (21-80)||(17813303-17813362)
chr5 (76-141)||(16063727-16063792)
chr5 (15-82)||(6766577-6766644)
chr5 (15-82)||(24276664-24276731)
chr5 (15-82)||(24385482-24385549)
chr5 (79-141)||(6551304-6551366)
chr5 (77-141)||(660766-660829)
chr5 (37-80)||(26754293-26754336)
[»] chr1 (20 HSPs)
chr1 (141-227)||(20822732-20822819)
chr1 (134-227)||(28476990-28477084)
chr1 (134-227)||(20836536-20836630)
chr1 (134-219)||(24719766-24719852)
chr1 (134-190)||(12710624-12710680)
chr1 (14-75)||(24960711-24960772)
chr1 (76-141)||(28476745-28476810)
chr1 (15-82)||(21180444-21180511)
chr1 (78-140)||(24719523-24719585)
chr1 (79-141)||(50544848-50544910)
chr1 (80-141)||(6834152-6834213)
chr1 (76-141)||(38056683-38056748)
chr1 (79-143)||(8276003-8276067)
chr1 (76-141)||(12710843-12710908)
chr1 (76-141)||(22145677-22145742)
chr1 (22-82)||(13227708-13227768)
chr1 (79-130)||(17901808-17901859)
chr1 (76-130)||(8306593-8306647)
chr1 (134-180)||(41931308-41931354)
chr1 (22-82)||(29535896-29535956)
[»] scaffold1186 (2 HSPs)
scaffold1186 (134-227)||(1724-1818)
scaffold1186 (79-141)||(1996-2058)
[»] scaffold0056 (2 HSPs)
scaffold0056 (134-227)||(15880-15974)
scaffold0056 (79-141)||(18251-18313)
[»] scaffold0005 (2 HSPs)
scaffold0005 (134-227)||(186450-186544)
scaffold0005 (79-141)||(186210-186272)
[»] scaffold0516 (2 HSPs)
scaffold0516 (134-222)||(7578-7667)
scaffold0516 (76-141)||(5316-5381)
[»] scaffold0878 (2 HSPs)
scaffold0878 (134-227)||(3678-3772)
scaffold0878 (76-141)||(3433-3498)
[»] chr2 (12 HSPs)
chr2 (134-219)||(21315734-21315820)
chr2 (134-227)||(29114465-29114559)
chr2 (134-219)||(21369002-21369088)
chr2 (134-219)||(21335524-21335610)
chr2 (136-190)||(23610360-23610414)
chr2 (76-140)||(21315487-21315551)
chr2 (76-140)||(21335277-21335341)
chr2 (76-137)||(21369273-21369334)
chr2 (134-223)||(23165958-23166052)
chr2 (134-223)||(23577215-23577309)
chr2 (76-141)||(23610602-23610667)
chr2 (99-141)||(34491274-34491316)
[»] scaffold0369 (1 HSPs)
scaffold0369 (135-227)||(15872-15965)
[»] scaffold0162 (1 HSPs)
scaffold0162 (134-219)||(24138-24224)
[»] chr6 (14 HSPs)
chr6 (134-219)||(20410766-20410852)
chr6 (134-227)||(17856515-17856610)
chr6 (15-82)||(29266167-29266234)
chr6 (76-141)||(21683086-21683151)
chr6 (174-226)||(16386528-16386580)
chr6 (76-140)||(23658066-23658130)
chr6 (79-141)||(19825500-19825562)
chr6 (82-140)||(20410529-20410587)
chr6 (15-80)||(1589946-1590011)
chr6 (76-141)||(18982548-18982613)
chr6 (15-82)||(15816827-15816894)
chr6 (196-227)||(21686252-21686283)
chr6 (79-130)||(29045258-29045309)
chr6 (79-141)||(15998865-15998927)
[»] scaffold0203 (2 HSPs)
scaffold0203 (134-219)||(18196-18284)
scaffold0203 (76-141)||(17951-18016)
[»] scaffold0032 (1 HSPs)
scaffold0032 (134-219)||(62107-62195)
[»] scaffold0468 (1 HSPs)
scaffold0468 (134-227)||(11023-11118)
[»] scaffold1783 (1 HSPs)
scaffold1783 (15-82)||(1165-1232)
[»] scaffold0023 (1 HSPs)
scaffold0023 (15-82)||(105819-105886)
[»] scaffold0676 (1 HSPs)
scaffold0676 (76-141)||(2857-2922)
[»] scaffold0414 (1 HSPs)
scaffold0414 (134-219)||(11416-11504)
[»] scaffold0231 (2 HSPs)
scaffold0231 (134-179)||(17777-17822)
scaffold0231 (78-141)||(17534-17597)
[»] scaffold0220 (1 HSPs)
scaffold0220 (76-141)||(13925-13990)
[»] scaffold0338 (1 HSPs)
scaffold0338 (14-82)||(3010-3078)
[»] scaffold0575 (1 HSPs)
scaffold0575 (15-82)||(9293-9360)
[»] scaffold0117 (2 HSPs)
scaffold0117 (15-82)||(34349-34416)
scaffold0117 (22-82)||(21666-21726)
[»] scaffold0071 (1 HSPs)
scaffold0071 (15-82)||(51819-51886)
[»] scaffold0061 (2 HSPs)
scaffold0061 (79-141)||(14600-14662)
scaffold0061 (79-141)||(23658-23720)
[»] scaffold1278 (1 HSPs)
scaffold1278 (134-223)||(1456-1545)
[»] scaffold0594 (1 HSPs)
scaffold0594 (76-141)||(2223-2288)
[»] scaffold0183 (1 HSPs)
scaffold0183 (134-183)||(11120-11169)
[»] scaffold0174 (2 HSPs)
scaffold0174 (76-141)||(11592-11657)
scaffold0174 (76-126)||(5445-5495)
[»] scaffold0042 (1 HSPs)
scaffold0042 (21-82)||(67522-67583)
[»] scaffold0213 (1 HSPs)
scaffold0213 (76-140)||(19184-19248)
[»] scaffold0064 (1 HSPs)
scaffold0064 (22-82)||(68806-68866)
[»] scaffold0431 (1 HSPs)
scaffold0431 (76-140)||(5608-5674)
[»] scaffold0328 (1 HSPs)
scaffold0328 (76-141)||(18651-18717)
[»] scaffold0247 (1 HSPs)
scaffold0247 (79-141)||(1052-1114)
[»] scaffold1256 (1 HSPs)
scaffold1256 (100-141)||(2235-2276)
[»] scaffold1204 (1 HSPs)
scaffold1204 (134-183)||(148-197)
[»] scaffold0452 (1 HSPs)
scaffold0452 (134-183)||(2843-2892)
[»] scaffold0108 (1 HSPs)
scaffold0108 (79-140)||(6395-6456)
[»] scaffold0004 (1 HSPs)
scaffold0004 (76-141)||(66083-66148)
[»] scaffold0672 (1 HSPs)
scaffold0672 (22-82)||(7643-7703)
[»] scaffold0017 (1 HSPs)
scaffold0017 (101-141)||(26703-26743)
[»] scaffold0007 (2 HSPs)
scaffold0007 (101-141)||(16455-16495)
scaffold0007 (76-141)||(18712-18777)
[»] scaffold0607 (1 HSPs)
scaffold0607 (19-82)||(3625-3688)
[»] scaffold0335 (1 HSPs)
scaffold0335 (15-66)||(1626-1677)
[»] scaffold0058 (1 HSPs)
scaffold0058 (108-143)||(59698-59733)
[»] scaffold0505 (1 HSPs)
scaffold0505 (76-141)||(4912-4977)
[»] scaffold0086 (1 HSPs)
scaffold0086 (80-141)||(35201-35262)
[»] scaffold0371 (1 HSPs)
scaffold0371 (112-140)||(10492-10520)
[»] scaffold0216 (1 HSPs)
scaffold0216 (22-82)||(22160-22220)


Alignment Details
Target: scaffold0298 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: scaffold0298
Description:

Target: scaffold0298; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 487 - 274
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggactagctttctctaaagatgagttgtacaattctg 114  Q
    |||||||||||||| ||||||||||| ||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||    
T  487 atcataggtataattatatagcaatgctgtaaacagttttggggattgaattgggaaaaattgggactagctttctctaaagatgggttgtataattctg 388  T
Q  115 aaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  387 aaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtataat 288  T
Q  214 gttgttgttgatga 227  Q
    ||||||||||||||    
T  287 gttgttgttgatga 274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 831800 - 832012
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggactagctttctctaaagatgagttgtacaattctg 114  Q
    |||||||||||||||||||||||||| ||||||  |||| ||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||     
T  831800 atcataggtataatcatatagcaatgctgtaaaaagttttggggattgaattgggaaaaattgggactagttttctctaaagatgggttgtacaattcta 831899  T
Q  115 aaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgttttgctcaaaattggtgaagtataatg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  831900 aaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgttttgctcaaaatgggtgaagtataatg 831999  T
Q  215 ttgttgttgatga 227  Q
    |||||||||||||    
T  832000 ttgttgttgatga 832012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 1196980 - 1197192
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggactagctttctctaaagatgagttgtacaattctg 114  Q
    |||||||||||||||||||||||||| ||||||  |||| ||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||     
T  1196980 atcataggtataatcatatagcaatgctgtaaaaagttttggggattgaattgggaaaaattgggactagttttctctaaagatgggttgtacaattcta 1197079  T
Q  115 aaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgttttgctcaaaattggtgaagtataatg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1197080 aaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgttttgctcaaaatgggtgaagtataatg 1197179  T
Q  215 ttgttgttgatga 227  Q
    |||||||||||||    
T  1197180 ttgttgttgatga 1197192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 34958447 - 34958234
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggactagctttctctaaagatgagttgtacaattctg 114  Q
    |||||| ||||||||||||||||||| ||||||| |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  34958447 atcatatgtataatcatatagcaatgctgtaaacagttttggggattaaattgggaaaaattgggactagctttctctaaagatgagttgtataattctg 34958348  T
Q  115 aaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataat 213  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||    
T  34958347 aaaaaggatttaacattgtagttgttgatgatgaatttacatgctcaagttagatatatatgtatacttgtgtttttgctcaaaattggtgaagtataat 34958248  T
Q  214 gttgttgttgatga 227  Q
    ||||||||||||||    
T  34958247 gttgttgttgatga 34958234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 4690917 - 4691011
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgt-gttttgctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  4690917 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtatttttgctcaaaattggtgaagtataatgttgttgttgatga 4691011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 47095248 - 47095154
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47095248 agttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtataatgttgttgttgatga 47095154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 18079554 - 18079648
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||    
T  18079554 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaaatataatgttattgttgatga 18079648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 43745452 - 43745358
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  43745452 agttgttgatgatgaatttatatggtcaagttatgtatatatgtatacttgagtttttgctcaaaattggtgaagtataatgttgttgttgatga 43745358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 20252446 - 20252538
Alignment:
Q  137 tgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgttgttgatgat 228  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| || |||||    
T  20252446 tgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtatgatgttgttttttatgat 20252538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 15575905 - 15575991
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgtt 219  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||    
T  15575905 agttgttgatgatgaatttatctgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattcgtgaagtatgatgttgtt 15575991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 18874922 - 18875003
Alignment:
Q  139 ttgatgatgaatttacatgctcaagttatgtatatatgtatacttgt-gttttgctcaaaattggtgaagtataatgttgtt 219  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||    
T  18874922 ttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtatttttgctcaaaattggtgaagtatgatgttgtt 18875003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 37727007 - 37727074
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||| ||||||||    
T  37727007 atcataggtataatcatatagcaatgttgtaaacagttttggggattgaattggaaaaaattgggact 37727074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 20252195 - 20252257
Alignment:
Q  78 ggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgtt 140  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||    
T  20252195 ggactagctttctctaataatgagttgtataattctgaaaaagggtttaacattgtagttgtt 20252257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 43745697 - 43745632
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||||||||||||||  |||||||||| |||| |||||||||||||||| ||||||||||||    
T  43745697 tgggactagctttctctaataatgagttgtataattatgaaaaagggtttaaccttgtagttgttg 43745632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 708440 - 708502
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttg 138  Q
    |||||||||||||||||||  ||| |||||| ||||||||||||||||||||| |||||||||    
T  708440 tgggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttg 708502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 15575660 - 15575725
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||||||||||||||  ||| |||||| ||||||||||||||||||||| ||||| ||||||    
T  15575660 tgggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtacttgttg 15575725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 19195652 - 19195588
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||||||||||||||  |||||||||| ||||||| ||||||||||||| ||||||||||||    
T  19195652 tgggactagctttctctaataatgagttgtataattctg-aaaagggtttaaccttgtagttgttg 19195588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 42042053 - 42041987
Alignment:
Q  16 tcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    ||||| ||||||||||||||||||||||||| | |||| |||||||||||| || ||| ||||||||    
T  42042053 tcataagtataatcatatagcaatgttgtaatcagttttggggattgaattagggaaaattgggact 42041987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 14153047 - 14153108
Alignment:
Q  21 ggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    |||||||||||||||||||| ||||| | |||| ||||||||||||||| ||| ||||||||    
T  14153047 ggtataatcatatagcaatgctgtaatcagttttggggattgaattggggaaaattgggact 14153108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 47095493 - 47095428
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||||||||||||||  ||| |||| | |||||||||||| |||||||| ||||||||||||    
T  47095493 tgggactagctttctctaataatgggttgaataattctgaaaaatggtttaaccttgtagttgttg 47095428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 4690674 - 4690738
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgtt 140  Q
    |||||||| ||||||||||   | ||||||| ||||||||||||||||||||| |||||||||||    
T  4690674 tgggactaactttctctaattctaagttgtataattctgaaaaagggtttaaccttgtagttgtt 4690738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 8513764 - 8513828
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgtt 140  Q
    |||||||| ||||||||||  ||| |||||| |||||| |||||||||||||| |||||||||||    
T  8513764 tgggactaactttctctaataatgggttgtataattctaaaaaagggtttaaccttgtagttgtt 8513828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 38299789 - 38299738
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaa 127  Q
    |||||||||||||||||||  ||| |||||| ||||||||||||||||||||    
T  38299789 tgggactagctttctctaataatgggttgtataattctgaaaaagggtttaa 38299738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 177
Target Start/End: Original strand, 48212984 - 48213027
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgt 177  Q
    |||||||||||||||||||| ||||||||||||| |||||||||    
T  48212984 agttgttgatgatgaatttatatgctcaagttatatatatatgt 48213027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 16250233 - 16250287
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacat 130  Q
    |||||||| ||||||||||  |||||||||| |||| ||||||||||||||||||    
T  16250233 tgggactaactttctctaataatgagttgtataattttgaaaaagggtttaacat 16250287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 19067597 - 19067535
Alignment:
Q  165 tatgtatatatgtatactt-gtgttttgctcaaaattggtgaagtataatgttgttgttgatg 226  Q
    ||||||| ||||||||||| |||||||||||||| |||||  ||||| |||||||||||||||    
T  19067597 tatgtatgtatgtatactttgtgttttgctcaaatttggttgagtatgatgttgttgttgatg 19067535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 15726215 - 15726150
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttggga 80  Q
    ||||||||||||||||| || || |||||||| | |||| ||||||||||||||| ||| ||||||    
T  15726215 atcataggtataatcatgtaacattgttgtaatcagttttggggattgaattggggaaaattggga 15726150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 19070053 - 19070012
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatat 175  Q
    |||||||||||||||| ||||||||||||||||| |||||||    
T  19070053 agttgttgatgatgaaattacatgctcaagttatatatatat 19070012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 8488105 - 8488169
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgtt 140  Q
    |||||||| ||||||||||  ||| |||||| |||||| |||||||||||||| || ||||||||    
T  8488105 tgggactaactttctctaataatgggttgtataattctaaaaaagggtttaaccttatagttgtt 8488169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 48213028 - 48213063
Alignment:
Q  192 ctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    |||||||||| |||||||||||||||||||||||||    
T  48213028 ctcaaaattgatgaagtataatgttgttgttgatga 48213063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 3192149 - 3192227
Alignment:
Q  151 ttacatgctcaagttatgtatatatgtatactt-gtgttttgct-caaaattggtgaagtataatgttgttgttgatga 227  Q
    ||||||||||||| | ||| ||||||||||||| |||||||  | |||||||| ||||  |||||||||||||||||||    
T  3192149 ttacatgctcaagatgtgtgtatatgtatactttgtgttttcattcaaaattgatgaaaaataatgttgttgttgatga 3192227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 15700897 - 15700951
Alignment:
Q  79 gactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgt 133  Q
    ||||||||||||||||  ||||||||||  ||||| |||| ||||||||||||||    
T  15700897 gactagctttctctaataatgagttgtatgattctaaaaaggggtttaacattgt 15700951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 18874679 - 18874740
Alignment:
Q  79 gactagctttctctaaagatgagttgtacaattctgaaaaa--gggtttaacattgtagttg 138  Q
    ||||||||||||||||  ||| |||||| ||||||||||||  ||||||||| |||||||||    
T  18874679 gactagctttctctaataatgggttgtataattctgaaaaaaggggtttaaccttgtagttg 18874740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 16383874 - 16383825
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 183  Q
    |||||||||||||||| ||||||||||||  ||| | |||||||||||||    
T  16383874 agttgttgatgatgaaattacatgctcaatatatttttatatgtatactt 16383825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 43276755 - 43276818
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgtt 140  Q
    |||||||| ||||||||||  ||| |||||| ||||||| |||| |||||||| |||||||||||    
T  43276755 tgggactaactttctctaataatgggttgtataattctg-aaaatggtttaaccttgtagttgtt 43276818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 10698 - 10485
Alignment:
Q  14 tatcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggactagctttctctaaagatgagttgtacaattct 113  Q
    ||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||    
T  10698 tatcataggtataatcatatagcaatgctgtaaacagttttggggattgaattgggaaaaattgggactagctttctctaaagatg-gttgtataattct 10600  T
Q  114 gaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  10599 gaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggcgaagtataa 10500  T
Q  213 tgttgttgttgatga 227  Q
    |||||||||||||||    
T  10499 tgttgttgttgatga 10485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 173; Significance: 5e-93; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 15747723 - 15747935
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggactagctttctctaaagatgagttgtacaattctg 114  Q
    |||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||| ||| ||||| |||||||||||||||||||||| |||||||    
T  15747723 atcataggtataatcatatagcaatgctgtaaacagttttggggattaaattgggaaaaattgagactaactttctctaaagatgagttgtataattctg 15747822  T
Q  115 aaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgttttgctcaaaattggtgaagtataatg 214  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15747823 aaaaagggtttaacattgtagttgttgatgatgaatatacatgctcaagttatgtatatatgtatacttgtgttttgctcaaaattggtgaagtataatg 15747922  T
Q  215 ttgttgttgatga 227  Q
    ||| |||||||||    
T  15747923 ttgatgttgatga 15747935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 17143124 - 17142918
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggactagctttctctaaagatgagttgtacaattctg 114  Q
    |||||||||||||||||||||||||| ||||||  |||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||    
T  17143124 atcataggtataatcatatagcaatgctgtaaatagttttggggattgaattgggaaaaattgggaatagctttctctaaagatgagttgtataattctg 17143025  T
Q  115 aaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataat 213  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17143024 aaaaggggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtataat 17142925  T
Q  214 gttgttg 220  Q
    |||||||    
T  17142924 gttgttg 17142918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 2424643 - 2424737
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2424643 agttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtataatgttgttgttgatga 2424737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 14630933 - 14630839
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  14630933 agttgctgatgatgaatttacatgctcaagatatgtatatatgtatacttgtgtttttgctcaaaatttgtgaagtataatgttgttgttgatga 14630839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 26446003 - 26445909
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    |||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26446003 agttgttgatgatgaatttatattctcaagttatgtatataagtatacttgtgtttttgctcaaaattggtgaagtataatgttgttgttgatga 26445909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 10237326 - 10237416
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgttgttg 223  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||    
T  10237326 agttgttgatgaagaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattgatgaagtataatgttattgttg 10237416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 25513892 - 25513827
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||    
T  25513892 tgggactagctttctctaataatgagttgtataattctgaaaaagggtttaacattgtagttgttg 25513827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 14035629 - 14035562
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| ||||||||    
T  14035629 atcataggtataatcatatagcaatgttgtaaacagttttggggattgaattgagaaaaattgggact 14035562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 9639051 - 9638984
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttgat 143  Q
    |||||||||||||||||||  |||||||||  ||||||||||||||||||||| ||||||||||||||    
T  9639051 tgggactagctttctctaataatgagttgtgtaattctgaaaaagggtttaaccttgtagttgttgat 9638984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 16296979 - 16296914
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||||||||||||||  |||||||||| ||||||||||||||||||||| | ||||||||||    
T  16296979 tgggactagctttctctaataatgagttgtataattctgaaaaagggtttaacctggtagttgttg 16296914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 16025917 - 16025968
Alignment:
Q  177 tatacttgtgtttt-gctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16025917 tatacttgtgtttttgctcaaaattggtgaagtataatgttgttgttgatga 16025968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 14631173 - 14631111
Alignment:
Q  79 gactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||||||||||||||  ||| |||||| ||||||||||||||||||||| ||||||||||||    
T  14631173 gactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttg 14631111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 33186941 - 33186880
Alignment:
Q  79 gactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgtt 140  Q
    ||||||||||||||||  ||| |||||| ||||||||||||||||||||| |||| ||||||    
T  33186941 gactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtggttgtt 33186880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 35660997 - 35660932
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||||||||||||||  ||| |||||| |||| ||||||| |||||||| ||||||||||||    
T  35660997 tgggactagctttctctaataatgggttgtataattatgaaaaatggtttaaccttgtagttgttg 35660932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 12424301 - 12424367
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctg--aaaaagggtttaacattgtagttgtt 140  Q
    |||||||||||||||||||  ||| |||||| |||||||  |||||||||||||| |||||||||||    
T  12424301 tgggactagctttctctaataatgggttgtataattctgaaaaaaagggtttaactttgtagttgtt 12424367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 26446246 - 26446183
Alignment:
Q  78 ggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||||||||||||  ||| |||||| |||||||||||| |||||||  ||||||||||||    
T  26446246 ggactagctttctctaataatgggttgtataattctgaaaaatggtttaatcttgtagttgttg 26446183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 15213681 - 15213730
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 183  Q
    |||||||||||||||| ||||||||||||  ||||| |||||||||||||    
T  15213681 agttgttgatgatgaaattacatgctcaatatatgtttatatgtatactt 15213730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 30147817 - 30147760
Alignment:
Q  25 taatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    |||||||||||||||| ||||| | |||| ||||||||||||||| ||| ||||||||    
T  30147817 taatcatatagcaatgatgtaatcagttttggggattgaattggggaaaattgggact 30147760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 54363351 - 54363400
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 183  Q
    |||||||||||||||| ||||||||||||  ||||| |||||||||||||    
T  54363351 agttgttgatgatgaaattacatgctcaatatatgtttatatgtatactt 54363400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 227
Target Start/End: Complemental strand, 25513712 - 25513681
Alignment:
Q  196 aaattggtgaagtataatgttgttgttgatga 227  Q
    ||||||||||||||||||||||||||||||||    
T  25513712 aaattggtgaagtataatgttgttgttgatga 25513681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 14049483 - 14049429
Alignment:
Q  22 gtataatcatatagcaatgttgtaaactgtttaggggattgaattg-ggaaaatt 75  Q
    ||||||||||||||||||| ||||| | |||| ||||||||||||| ||||||||    
T  14049483 gtataatcatatagcaatgctgtaatcagttttggggattgaattgtggaaaatt 14049429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 19081221 - 19081274
Alignment:
Q  169 tatatatgtatacttgtgttttgctcaaaattggtgaagtataatgttgttgttg 223  Q
    ||||| |||||||| |||||||||||||||||| ||||| || ||||||||||||    
T  19081221 tatatttgtatact-gtgttttgctcaaaattgatgaagaatgatgttgttgttg 19081274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 15239830 - 15239879
Alignment:
Q  79 gactagctttctctaaagatgagttgtacaattctgaaaaagggtttaac 128  Q
    ||||||||||||||||  |||| ||||| || ||||||||||||||||||    
T  15239830 gactagctttctctaataatgaattgtataaatctgaaaaagggtttaac 15239879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 19622239 - 19622288
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 183  Q
    ||||||| |||||||| ||||||||||||  ||||| |||||||||||||    
T  19622239 agttgttaatgatgaaattacatgctcaatatatgtttatatgtatactt 19622288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 166; Significance: 8e-89; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 38184862 - 38185075
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggactagctttctctaaagatgagttgtacaattctg 114  Q
    |||||||||| ||||||||||||||| |||| || |||| | ||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||    
T  38184862 atcataggtacaatcatatagcaatgctgtagacagttttgaggattgaattgggaaaaattgggactagctttctctaaagatgggttgtataattctg 38184961  T
Q  115 aaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataat 213  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38184962 aaaaagggtttaacattgtagttattgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtataat 38185061  T
Q  214 gttgttgttgatga 227  Q
    ||||||||||||||    
T  38185062 gttgttgttgatga 38185075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 20494554 - 20494663
Alignment:
Q  119 agggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttg 217  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||    
T  20494554 agggtttaacattgtagttgttgatgataaatttacatgctcaagttatgtatatatgtaaacttgtgtttttgctcaaaattggtgaagtataatattg 20494653  T
Q  218 ttgttgatga 227  Q
    ||||||||||    
T  20494654 ttgttgatga 20494663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 75 - 162
Target Start/End: Original strand, 18023566 - 18023653
Alignment:
Q  75 ttgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaa 162  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18023566 ttgggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaa 18023653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 134 - 220
Target Start/End: Complemental strand, 22366186 - 22366099
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgttg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22366186 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtataatgttgttg 22366099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 21514487 - 21514393
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  21514487 agttgttgatgatgaaattatatgctcaagttatgtatatatgtatacttgtgttttttctcaaaattggtgaagtataatgttgttgttgatga 21514393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 4380865 - 4380951
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgtt 219  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||    
T  4380865 agttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattcgtgaagtattatgttgtt 4380951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 22723368 - 22723274
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||  |||| ||||||||||    
T  22723368 agttgttgatgatgaatttacatgcttaagttatgtatatatgtatacttgtgtttttgctcaaaattgatgaagtattttgttattgttgatga 22723274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 18816551 - 18816624
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaa 206  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  18816551 agttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattgttgaa 18816624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 18816306 - 18816371
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||||||||||    
T  18816306 tgggactagctttctctaaaaatgggttgtataattctgaaaaagggtttaaccttgtagttgttg 18816371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 22208310 - 22208246
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgtt 140  Q
    |||||||||||||||||||  ||| |||||| ||||||||||||||||||||| |||||||||||    
T  22208310 tgggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgtt 22208246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 24907986 - 24907917
Alignment:
Q  161 aagttatgtatatatgt--atacttgtgttttg-ctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    |||||||||||||||||  |||||||||||||  |||||||||| |||||||||||||||||||||||||    
T  24907986 aagttatgtatatatgtgtatacttgtgttttttctcaaaattgatgaagtataatgttgttgttgatga 24907917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 21514732 - 21514667
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||||||| |||||||||  |||||||||| |||||| |||||||||||||| ||||||||||||    
T  21514732 tgggactagatttctctaataatgagttgtataattcttaaaaagggtttaaccttgtagttgttg 21514667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 22483827 - 22483763
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgtt 140  Q
    |||||||||||||||||||  ||| |||||| ||||||||||||||||||||||| || ||||||    
T  22483827 tgggactagctttctctaataatgggttgtataattctgaaaaagggtttaacatcgttgttgtt 22483763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 21860706 - 21860764
Alignment:
Q  21 ggtataatcatatagcaatgttgtaaactgtttaggggattgaatt-gggaaaatttgg 78  Q
    |||||||||||||||||||||||||| | |||| |||||||||||| ||||||||||||    
T  21860706 ggtataatcatatagcaatgttgtaatcagttttggggattgaattggggaaaatttgg 21860764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 36732426 - 36732488
Alignment:
Q  79 gactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||||||||||||||  ||| |||||| ||||||||||||| ||||||| ||||||||||||    
T  36732426 gactagctttctctaataatgggttgtataattctgaaaaagagtttaaccttgtagttgttg 36732488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 4380628 - 4380693
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||| ||||||||||   | ||||||| ||||||||||||||||||||| ||||||||||||    
T  4380628 tgggactaactttctctaattctaagttgtataattctgaaaaagggtttaaccttgtagttgttg 4380693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 18023647 - 18023684
Alignment:
Q  190 tgctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18023647 tgctcaaaattggtgaagtataatgttgttgttgatga 18023684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 22258320 - 22258384
Alignment:
Q  79 gactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttgat 143  Q
    ||||||||||||||||  |||||||||| |||||  |||||||||||||| ||| ||||||||||    
T  22258320 gactagctttctctaataatgagttgtataattccaaaaaagggtttaaccttgcagttgttgat 22258384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 22483978 - 22483914
Alignment:
Q  77 gggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||||| ||||||||||  |||||||||| |||||| |||||||||||||||| || |||||||    
T  22483978 gggactaactttctctaataatgagttgtataattcttaaaaagggtttaacatggttgttgttg 22483914  T

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Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 15635261 - 15635312
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaatt 66  Q
    ||||||||| |||||||||||||||| ||||| | |||| ||||||||||||    
T  15635261 atcataggtgtaatcatatagcaatgctgtaatcagttttggggattgaatt 15635312  T

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Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 22920142 - 22920203
Alignment:
Q  18 ataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttggg 79  Q
    ||||||| ||||||||| || |||||||| | |||| ||||||||||||||| ||| |||||    
T  22920142 ataggtagaatcatataacattgttgtaatcagttttggggattgaattggggaaaattggg 22920203  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 24239805 - 24239756
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 183  Q
    |||| ||||||||||| ||||||||||||  ||||| |||||||||||||    
T  24239805 agttcttgatgatgaaattacatgctcaatatatgtttatatgtatactt 24239756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 166; Significance: 8e-89; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 2247816 - 2248029
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggactagctttctctaaagatgagttgtacaattctg 114  Q
    ||||||| |||||||||||||| |||||||||||  ||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||    
T  2247816 atcatagatataatcatatagcgatgttgtaaacaattttggggattgaattgggaaaaattgggactagctttctctaaagatgggttgtataattctg 2247915  T
Q  115 aaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||    
T  2247916 aaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgcatacttatgtttttgctcaaaattggtgaagtataat 2248015  T
Q  214 gttgttgttgatga 227  Q
    ||||||||||||||    
T  2248016 gttgttgttgatga 2248029  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 24546996 - 24546902
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtt-ttgctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  24546996 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtattgttgcccaaaattggtgaagtataatgttgttgttgatga 24546902  T

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Target: chr3; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 24549207 - 24549301
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtt-ttgctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  24549207 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtattcttgcccaaaattggtgaagtataatgttgttgttgatga 24549301  T

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Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 25104036 - 25104125
Alignment:
Q  139 ttgatgatgaatttacatgctcaagttatgtatatatgtatacttgt-gttttgctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||| ||||||||||||||||||||    
T  25104036 ttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtatttttgctcaaaattgatgaactataatgttgttgttgatga 25104125  T

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Target: chr3; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 17208320 - 17208234
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgtt 219  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  17208320 agttgttgatgatgattttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtatgatgttgtt 17208234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 14520242 - 14520156
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgtt 219  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||    
T  14520242 agttgttgatgatgaatttatatgcttaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaaatatgatgttgtt 14520156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 17208565 - 17208500
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||||||||||||||  |||||||||| |||||||||||||| |||||| ||||||||||||    
T  17208565 tgggactagctttctctaataatgagttgtataattctgaaaaaggatttaaccttgtagttgttg 17208500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 14152410 - 14152474
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgtt 140  Q
    |||||||||||||||||||  ||||||||||  |||||||||||||||||||| |||||||||||    
T  14152410 tgggactagctttctctaataatgagttgtatcattctgaaaaagggtttaaccttgtagttgtt 14152474  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 1988306 - 1988364
Alignment:
Q  20 aggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgg 78  Q
    ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| ||||    
T  1988306 aggtataatcatatagcaatgctgtaaacagttttggggattgaattgggaaaaattgg 1988364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 45803342 - 45803407
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||||||||||||||  ||| |||||| ||||||||||||||||||||||| || |||||||    
T  45803342 tgggactagctttctctaataatgggttgtataattctgaaaaagggtttaacatcgttgttgttg 45803407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 22841290 - 22841344
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacat 130  Q
    |||||||||||||||||||  ||| |||||| |||||||||||||||||||||||    
T  22841290 tgggactagctttctctaataatgggttgtataattctgaaaaagggtttaacat 22841344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 5215684 - 5215627
Alignment:
Q  80 actagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagtt 137  Q
    |||||||||||||||  |||||||||| |||| |||||||||||||||| ||||||||    
T  5215684 actagctttctctaataatgagttgtataattatgaaaaagggtttaaccttgtagtt 5215627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 14641559 - 14641624
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||| |||||||||||||  ||| |||||| |||||| |||||||||||||| ||||||||||||    
T  14641559 tgggattagctttctctaataatgggttgtataattctaaaaaagggtttaaccttgtagttgttg 14641624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 29907680 - 29907615
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||||||||||||| |||   || |||||| ||||||||||||||||||||| ||||||||||||    
T  29907680 tgggactagctttctttaatattgggttgtataattctgaaaaagggtttaaccttgtagttgttg 29907615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 29948846 - 29948781
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||||||||||||| |||   || |||||| ||||||||||||||||||||| ||||||||||||    
T  29948846 tgggactagctttctttaatattgggttgtataattctgaaaaagggtttaaccttgtagttgttg 29948781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 29998000 - 29997935
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||||||||||||| |||   || |||||| ||||||||||||||||||||| ||||||||||||    
T  29998000 tgggactagctttctttaatattgggttgtataattctgaaaaagggtttaaccttgtagttgttg 29997935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 15566785 - 15566721
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgtt 140  Q
    |||||||| ||||||||||   | ||||||| ||||||||||||||||||||| |||||||||||    
T  15566785 tgggactaactttctctaattctaagttgtataattctgaaaaagggtttaaccttgtagttgtt 15566721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 14520487 - 14520422
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||||||||||||| |||  ||| |||||| |||||| ||||| |||||||| ||||||||||||    
T  14520487 tgggactagctttctttaataatgggttgtataattctaaaaaaaggtttaaccttgtagttgttg 14520422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 17758665 - 17758714
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 183  Q
    |||||||||||||||| ||||||||||||  ||||| |||||||||||||    
T  17758665 agttgttgatgatgaaattacatgctcaatatatgtttatatgtatactt 17758714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 19059985 - 19060034
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 183  Q
    |||||||||||||||| ||||||||||||  ||||| |||||||||||||    
T  19059985 agttgttgatgatgaaattacatgctcaatatatgtttatatgtatactt 19060034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 12917317 - 12917382
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||| ||||||||||  ||| ||||||  ||||| |||||||||||||||| || |||||||    
T  12917317 tgggactaactttctctaataatgggttgtatgattctaaaaaagggtttaacatggttgttgttg 12917382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 40038987 - 40039036
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 183  Q
    |||||||||||||||| ||||||| ||||  ||||| |||||||||||||    
T  40038987 agttgttgatgatgaaattacatgttcaatatatgtttatatgtatactt 40039036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 18744677 - 18744583
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18744677 agttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtataatgttgttgttgatga 18744583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 1627324 - 1627418
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  1627324 agttgttgatgatgaatttatatgctcaagttatctatatatgtatacttgtgtttttgctcaaaattgatgaagtataatgttgttgttgatga 1627418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 134 - 220
Target Start/End: Complemental strand, 660586 - 660499
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgttg 220  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  660586 agttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattgatgaagtataatgttgttg 660499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 23199463 - 23199549
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttg-tgttttgctcaaaattggtgaagtataatgttgtt 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||||||    
T  23199463 agttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgcatttttgctcaaaattggtgaagtatgatgttgtt 23199549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 18744915 - 18744851
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgtt 140  Q
    |||||||| ||||||||||  ||| |||||| ||||||||||||||||||||| |||||||||||    
T  18744915 tgggactaactttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgtt 18744851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 23199218 - 23199282
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgtt 140  Q
    |||||||||||||||||||  ||| |||||| |||||||||||| |||||||| |||||||||||    
T  23199218 tgggactagctttctctaataatgggttgtataattctgaaaaatggtttaaccttgtagttgtt 23199282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 17813362 - 17813303
Alignment:
Q  21 ggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttggga 80  Q
    |||||||||||||||||||||||||| | |||| ||||||||||||||| ||| ||||||    
T  17813362 ggtataatcatatagcaatgttgtaatcagttttggggattgaattggggaaaattggga 17813303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 16063792 - 16063727
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||| ||||||||||  ||| |||||| |||||| |||||||||||||| ||||||||||||    
T  16063792 tgggactacctttctctaataatgggttgtataattctaaaaaagggtttaaccttgtagttgttg 16063727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 6766644 - 6766577
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    |||||||||||||||||||||||||| || || | |||| ||||||||||||||| ||| ||| ||||    
T  6766644 atcataggtataatcatatagcaatgctgcaatcagttttggggattgaattggggaaaattgagact 6766577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 24276664 - 24276731
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    |||||||| |||||||| ||||| |||||||| | |||| ||||| ||||||||||||| ||||||||    
T  24276664 atcataggcataatcatgtagcattgttgtaatcagttttggggaatgaattgggaaaaattgggact 24276731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 24385549 - 24385482
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    |||||||| |||||||| ||||| |||||||| | |||| ||||| ||||||||||||| ||||||||    
T  24385549 atcataggcataatcatgtagcattgttgtaatcagttttggggaatgaattgggaaaaattgggact 24385482  T

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Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 6551304 - 6551366
Alignment:
Q  79 gactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||| ||||||||||   | ||||||| ||||||||||||||||||||| ||||||||||||    
T  6551304 gactaactttctctaattctaagttgtataattctgaaaaagggtttaaccttgtagttgttg 6551366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 660829 - 660766
Alignment:
Q  77 gggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||||||||||||||||  | | |||||| |||||||||||| |||||||| ||||||||||||    
T  660829 gggactagctttctctaataaggggttgtataattctgaaaaa-ggtttaaccttgtagttgttg 660766  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 26754336 - 26754293
Alignment:
Q  37 aatgttgtaaactgtttaggggattgaattgggaaaatttggga 80  Q
    |||||||||||| |||| |||||| |||||||||||||||||||    
T  26754336 aatgttgtaaacagttttggggatcgaattgggaaaatttggga 26754293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 20822819 - 20822732
Alignment:
Q  141 gatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20822819 gatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtataatgttgttgttgatga 20822732  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 28476990 - 28477084
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  28476990 agttgttgatgatgaatttatatgctcaagttatgtatatatgtataattgtgtttttgctcaaaattggtgaagtataatgttgttgttgatga 28477084  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 20836630 - 20836536
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| ||||    
T  20836630 agttcttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtagaatgtggttgtttatga 20836536  T

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Target: chr1; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 24719766 - 24719852
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgtt 219  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  24719766 agttgttgatgatgaatttatatgttcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtatgatgttgtt 24719852  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 12710680 - 12710624
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttt 190  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  12710680 agttgttgatgatgaatttacatattcaagttatgtatatatgtatacttgtgtttt 12710624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 24960772 - 24960711
Alignment:
Q  14 tatcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatt 75  Q
    ||||||||||||||||||||||||||| ||||| | |||| |||||||||||||||||||||    
T  24960772 tatcataggtataatcatatagcaatgctgtaatcagttttggggattgaattgggaaaatt 24960711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 28476745 - 28476810
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||||||| |||||||||  |||||||||| ||||||||||||||||||||| ||||||||||||    
T  28476745 tgggactagatttctctaataatgagttgtataattctgaaaaagggtttaaccttgtagttgttg 28476810  T

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Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 21180444 - 21180511
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    |||||||||||||||||||||||||| ||||| | |||| ||||| ||||||||||||| ||||||||    
T  21180444 atcataggtataatcatatagcaatgctgtaatcagttttggggaatgaattgggaaaaattgggact 21180511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 24719523 - 24719585
Alignment:
Q  78 ggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgtt 140  Q
    |||||||||||||||||  ||| |||||| ||||||||||||||||||||| |||||||||||    
T  24719523 ggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgtt 24719585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 50544910 - 50544848
Alignment:
Q  79 gactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||||||||||||||  ||| |||||| ||||||||||||||||||||| ||||||||||||    
T  50544910 gactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttg 50544848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 6834213 - 6834152
Alignment:
Q  80 actagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||||||||||  |||||||||| ||||||||||||||||||||||| || |||||||    
T  6834213 actagctttctctaataatgagttgtataattctgaaaaagggtttaacatggttgttgttg 6834152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 38056683 - 38056748
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||||||||||||||||   ||| |||||| ||||||||||||||||||||| ||||||||||||    
T  38056683 tgggactagctttctctagtaatgggttgtataattctgaaaaagggtttaaccttgtagttgttg 38056748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 8276003 - 8276067
Alignment:
Q  79 gactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttgat 143  Q
    |||||||||| |||||  |||||| ||| ||||||||||||||||||||| ||||||||||||||    
T  8276003 gactagctttatctaataatgagtggtataattctgaaaaagggtttaaccttgtagttgttgat 8276067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 12710908 - 12710843
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||||||||||||||   || |||||| ||||||||||||||||||||  ||||||||||||    
T  12710908 tgggactagctttctctaatattgggttgtataattctgaaaaagggtttaatcttgtagttgttg 12710843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 22145677 - 22145742
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||| ||||||||||  ||| |||||  ||||||||||||||||||||| ||||||||||||    
T  22145677 tgggactaactttctctaataatgggttgtttaattctgaaaaagggtttaaccttgtagttgttg 22145742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 13227768 - 13227708
Alignment:
Q  22 gtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    ||||||||||||||||||| ||||| | |||| ||||||||||||||| ||| ||||||||    
T  13227768 gtataatcatatagcaatgctgtaatcagttttggggattgaattggggaaaattgggact 13227708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 17901808 - 17901859
Alignment:
Q  79 gactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacat 130  Q
    ||||||||||||||||  ||| |||||| |||||||||||||||||||||||    
T  17901808 gactagctttctctaataatgggttgtataattctgaaaaagggtttaacat 17901859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 8306647 - 8306593
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacat 130  Q
    |||||||||||||||||||  ||| |||||| |||||| |||| |||||||||||    
T  8306647 tgggactagctttctctaataatgggttgtataattctaaaaaggggtttaacat 8306593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 41931308 - 41931354
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtata 180  Q
    |||||||||||||||| ||||||| ||||||||| ||||||| ||||    
T  41931308 agttgttgatgatgaaattacatgttcaagttatatatatatatata 41931354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 29535956 - 29535896
Alignment:
Q  22 gtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    ||||||||||||||||||| ||||| |  ||| |||||| |||||||| ||| ||||||||    
T  29535956 gtataatcatatagcaatgctgtaatcatttttggggatcgaattggggaaaattgggact 29535896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1186 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold1186
Description:

Target: scaffold1186; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 1818 - 1724
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  1818 agttgctgatgatgaatttacatgctcaagatatgtatatatgtatacttgtgtttttgctcaaaatttgtgaagtataatgttgttgttgatga 1724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1186; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 2058 - 1996
Alignment:
Q  79 gactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||||||||||||||  ||| |||||| ||||||||||||||||||||| ||||||||||||    
T  2058 gactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttg 1996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 15974 - 15880
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||| |||||||||||||    
T  15974 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttactcaaaattgatgaagtataatattgttgttgatga 15880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 18313 - 18251
Alignment:
Q  79 gactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||||||||||||||  ||| |||||| ||||||||||||||||||||| ||||||||||||    
T  18313 gactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttg 18251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 186450 - 186544
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  186450 agttgctgatgatgaatttacatgctcaagatatgtatatatgtatacttgtgtttttgctcaaaatttgtgaagtataatgttgttgttgatga 186544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 186210 - 186272
Alignment:
Q  79 gactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||||||||||||||  ||| |||||| ||||||||||||||||||||| ||||||||||||    
T  186210 gactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttg 186272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 7578 - 7667
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgttgtt 222  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7578 agttgttgatgatgaatttacatgttcaagttatgtgtatatgtatacttgtgtttttgctcaaaattggtgaagtataatgttgttgtt 7667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 5316 - 5381
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||| ||||||||||   | ||||||| |||||| |||||||||||||| ||||||||||||    
T  5316 tgggactaactttctctaattttaagttgtataattcttaaaaagggtttaaccttgtagttgttg 5381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 3678 - 3772
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||    
T  3678 agttgttgaagatgaatttacatgcttaagttatgtatatatgtatacttgtgtttttgcttaaaattggtgaactataatgttgttgttgatga 3772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 3433 - 3498
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||||||||||||||  ||| ||||||  |||||||||||||||||||| ||||||||||||    
T  3433 tgggactagctttctctaataatgcgttgtatgattctgaaaaagggtttaaccttgtagttgttg 3498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 21315734 - 21315820
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgtt 219  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  21315734 agttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtatgatgttgtt 21315820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 29114559 - 29114465
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||| ||||||||| ||||||||||    
T  29114559 agttgttgatgatgaatttacatgctcaagttatgtataaatgtatacttgtgtttttactcaaaattggtgaaatataatgttattgttgatga 29114465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 21369088 - 21369002
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgtt 219  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  21369088 agttgttgttgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtatgatgttgtt 21369002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 21335524 - 21335610
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgtt 219  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| ||||||||    
T  21335524 agttgttgatgatgaatttatatgctcaagttatgtatatatatatacttgtgtttttgcacaaaattggtgaagtatgatgttgtt 21335610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 23610414 - 23610360
Alignment:
Q  136 ttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttt 190  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23610414 ttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttt 23610360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 21315487 - 21315551
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgtt 140  Q
    |||||||||||||||||||  ||| |||||| ||||||||||||||||||||| |||||||||||    
T  21315487 tgggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgtt 21315551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 21335277 - 21335341
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgtt 140  Q
    |||||||||||||||||||  ||| |||||| ||||||||||||||||||||| |||||||||||    
T  21335277 tgggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgtt 21335341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 21369334 - 21369273
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagtt 137  Q
    |||||| ||||||||||||  ||| |||||| ||||||||||||||||||||| ||||||||    
T  21369334 tgggacaagctttctctaacaatgggttgtataattctgaaaaagggtttaaccttgtagtt 21369273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 23165958 - 23166052
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagtt----atgtatatatgtatactt-gtgttttgctcaaaattggtgaagtataatgttgttgttg 223  Q
    ||||||||||| ||||||||||||||  || |    || ||||||||||||||| ||||||||||||||||||||||| ||| || |||||||||    
T  23165958 agttgttgatgttgaatttacatgcttgagatgtatatatatatatgtatactttgtgttttgctcaaaattggtgaaatatgatattgttgttg 23166052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 23577215 - 23577309
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagtt----atgtatatatgtatactt-gtgttttgctcaaaattggtgaagtataatgttgttgttg 223  Q
    ||||||||||| ||||||||||||||  || |    || ||||||||||||||| ||||||||||||||||||||||| ||| || |||||||||    
T  23577215 agttgttgatgttgaatttacatgcttgagatgtatatatatatatgtatactttgtgttttgctcaaaattggtgaaatatgatattgttgttg 23577309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 23610667 - 23610602
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||||||||||||||  ||| |||||| |||| ||||||| |||||||| || |||||||||    
T  23610667 tgggactagctttctctaataatgggttgtataattatgaaaaatggtttaaccttctagttgttg 23610602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 34491274 - 34491316
Alignment:
Q  99 gagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||| ||||||||||||||||||||||| || |||||||    
T  34491274 gagttgtataattctgaaaaagggtttaacatggttgttgttg 34491316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 135 - 227
Target Start/End: Original strand, 15872 - 15965
Alignment:
Q  135 gttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||| ||| ||||||||||    
T  15872 gttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttacttaaaattggtgaagtataacgttattgttgatga 15965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 24138 - 24224
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgtt 219  Q
    |||| ||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  24138 agttcttgatgatgaattcatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtatgatgttgtt 24224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 20410766 - 20410852
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgtt 219  Q
    |||||||||||||||||||| |||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||    
T  20410766 agttgttgatgatgaatttatatgctcgagttatgtatataagtatacttgtgtttttgctcaaaattggtgaagtatgatgttgtt 20410852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 17856515 - 17856610
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatac-ttgtgtttt-gctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    |||||||||||||||| ||||||||||||| | ||||||||||||||| ||||||||| | | ||||||| ||||  || ||||||||||||||||    
T  17856515 agttgttgatgatgaaattacatgctcaagatgtgtatatatgtatactttgtgttttcgtttaaaattgatgaaaaattatgttgttgttgatga 17856610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 29266234 - 29266167
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    |||||||||||||||||||||||||| ||||| | |||| ||||||||||||||| ||| ||||||||    
T  29266234 atcataggtataatcatatagcaatgctgtaatcagttttggggattgaattggggaaaattgggact 29266167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 21683086 - 21683151
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||||||||||||||  ||| |||||| ||||| ||||||||||||||| ||||||||||||    
T  21683086 tgggactagctttctctaataatgggttgtataattcagaaaaagggtttaaccttgtagttgttg 21683151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 16386580 - 16386528
Alignment:
Q  174 atgtatacttgtgttttgctcaaaattggtgaagtataatgttgttgttgatg 226  Q
    |||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||    
T  16386580 atgtatacttgtgtttcgctcaaaattgatgaagaataatattgttgttgatg 16386528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 23658130 - 23658066
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgtt 140  Q
    |||||||||||||| ||||  ||  |||||| ||||||||||||||||||||| |||||||||||    
T  23658130 tgggactagctttccctaataataggttgtataattctgaaaaagggtttaaccttgtagttgtt 23658066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 19825500 - 19825562
Alignment:
Q  79 gactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||||||||||||||  ||| |||| | |||||||||||||| |||||| ||||||||||||    
T  19825500 gactagctttctctaataatgggttgcataattctgaaaaaggttttaaccttgtagttgttg 19825562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 20410529 - 20410587
Alignment:
Q  82 tagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgtt 140  Q
    |||||||||||||  ||| |||||| |||||||||||||| |||||| |||||||||||    
T  20410529 tagctttctctaataatgggttgtataattctgaaaaaggatttaaccttgtagttgtt 20410587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 1589946 - 1590011
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttggga 80  Q
    ||||||||||||||||| || || |||||||| | |||| ||||||||||||||| ||| ||||||    
T  1589946 atcataggtataatcatgtaacattgttgtaatcagttttggggattgaattggggaaaattggga 1590011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 18982613 - 18982548
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||| || |||| |||||  ||| |||||| ||||||||||||||||||||| ||||||||||||    
T  18982613 tgggattaactttatctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttg 18982548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 15816827 - 15816894
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    |||||||||||||| ||||||||||| ||||| | |||| || |||||||||||| ||| | ||||||    
T  15816827 atcataggtataattatatagcaatgctgtaatcagttttggcgattgaattggggaaaatagggact 15816894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 227
Target Start/End: Original strand, 21686252 - 21686283
Alignment:
Q  196 aaattggtgaagtataatgttgttgttgatga 227  Q
    ||||||||||||||||||||||||||||||||    
T  21686252 aaattggtgaagtataatgttgttgttgatga 21686283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 29045309 - 29045258
Alignment:
Q  79 gactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacat 130  Q
    ||||||||||||||||  ||| |||||| |||| ||||||||||||||||||    
T  29045309 gactagctttctctaataatgggttgtataattttgaaaaagggtttaacat 29045258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 15998927 - 15998865
Alignment:
Q  79 gactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||| ||||||||||   | ||||||| ||||||||||||| ||||||| ||||||||||||    
T  15998927 gactaactttctctaattctaagttgtataattctgaaaaagagtttaaccttgtagttgttg 15998865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 18196 - 18284
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatg--tatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgtt 219  Q
    |||||||||||||||||||| ||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  18196 agttgttgatgatgaatttatatgctcaagttatgtatatatatgtatacttgtgtttttgctcaaaattggtgaagtatgatgttgtt 18284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 17951 - 18016
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||| ||||||||||   | ||||||| |||||||||||||| |||||| ||||||||||||    
T  17951 tgggactaactttctctaattctaagttgtataattctgaaaaaggatttaaccttgtagttgttg 18016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 62107 - 62195
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatg--tatatatgtatacttgtg-ttttgctcaaaattggtgaagtataatgttgtt 219  Q
    |||||||||||||||||||| ||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  62107 agttgttgatgatgaatttatatgctcaagttatgtatatatatgtatacttgtgtttttgctcaaaattggtgaagtatgatgttgtt 62195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 11023 - 11118
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatac-ttgtgtttt-gctcaaaattggtgaagtataatgttgttgttgatga 227  Q
    |||||||||||||||| ||||||||||||| | ||||||||||||||| |||||||||  |||||||||| |||| ||||||||||||||||||||    
T  11023 agttgttgatgatgaaattacatgctcaagatgtgtatatatgtatactttgtgttttcactcaaaattgatgaaatataatgttgttgttgatga 11118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1783 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1783
Description:

Target: scaffold1783; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 1232 - 1165
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    |||||||||||||||||||||||||||||||| | |||| ||||||||||||||| ||| ||||||||    
T  1232 atcataggtataatcatatagcaatgttgtaatcagttttggggattgaattggggaaaattgggact 1165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 105886 - 105819
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    |||||||||||||||||||||||||||||||| | |||| ||||||||||||||| ||| ||||||||    
T  105886 atcataggtataatcatatagcaatgttgtaatcagttttggggattgaattggggaaaattgggact 105819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0676 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 2922 - 2857
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||||||||||||||  ||| |||||| ||||||||||||||||||||| ||||||||||||    
T  2922 tgggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttg 2857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 11416 - 11504
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatg--tatatatgtatacttgt-gttttgctcaaaattggtgaagtataatgttgtt 219  Q
    |||||||||||||||| ||| ||| ||||||||||  |||||||||||||||||  ||||||||||||||||| |||||| ||||||||    
T  11416 agttgttgatgatgaacttatatgttcaagttatgcatatatatgtatacttgtatttttgctcaaaattggtcaagtatgatgttgtt 11504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 17777 - 17822
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtat 179  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  17777 agttgttgatgatgaatttatatgctcaagttatgtatatatgtat 17822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 17534 - 17597
Alignment:
Q  78 ggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||||||||| |||||  |||  ||||| ||||||||||||||||||||| ||||||||||||    
T  17534 ggactagctttttctaataatggattgtataattctgaaaaagggtttaaccttgtagttgttg 17597  T

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Target: scaffold0220 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 13990 - 13925
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||||||||||||||  ||| |||||| ||||||||||||||||||||| ||| ||||||||    
T  13990 tgggactagctttctctaataatgggttgtaaaattctgaaaaagggtttaaccttgaagttgttg 13925  T

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Target: scaffold0338 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 3010 - 3078
Alignment:
Q  14 tatcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    |||||||| |||||||||||||||||||||||| | |||| ||||||||||||| | ||| ||||||||    
T  3010 tatcatagttataatcatatagcaatgttgtaatcagttttggggattgaattgaggaaaattgggact 3078  T

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Target: scaffold0575 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0575
Description:

Target: scaffold0575; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 9360 - 9293
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    |||||| ||||||||||||||||||||||||| | |||| ||||||||||||||| | | ||||||||    
T  9360 atcatatgtataatcatatagcaatgttgtaatcagttttggggattgaattggggacaattgggact 9293  T

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Target: scaffold0117 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 34416 - 34349
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    ||||||||||||||||||||||| |||||||| | |||| ||||| ||||||||| ||| ||||||||    
T  34416 atcataggtataatcatatagcattgttgtaatcagttttggggaatgaattggggaaaattgggact 34349  T

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Target: scaffold0117; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 21726 - 21666
Alignment:
Q  22 gtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    ||||||||||||||||||| ||||| | |||| |||||||||||| || ||| ||||||||    
T  21726 gtataatcatatagcaatgctgtaatcagttttggggattgaatttgggaaaattgggact 21666  T

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Target: scaffold0071 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 51886 - 51819
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    |||||||||||||||||||| ||||||||||| | |||| ||||||||||||||| ||| || |||||    
T  51886 atcataggtataatcatataacaatgttgtaatcagttttggggattgaattggggaaaattaggact 51819  T

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Target: scaffold0061 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 14600 - 14662
Alignment:
Q  79 gactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||||||||||||||  ||| |||||| ||||||||||||||||||||  ||||||||||||    
T  14600 gactagctttctctaataatgggttgtataattctgaaaaagggtttaaatttgtagttgttg 14662  T

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Target: scaffold0061; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 23658 - 23720
Alignment:
Q  79 gactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||||||||||||||  ||| |||||| ||||||||||||||||||||  ||||||||||||    
T  23658 gactagctttctctaataatgggttgtataattctgaaaaagggtttaaatttgtagttgttg 23720  T

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Target: scaffold1278 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1278
Description:

Target: scaffold1278; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 1545 - 1456
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgttttgctcaaaattggtgaagtataatgttgttgttg 223  Q
    |||||||| ||||||| ||||||||||||| ||| ||||||| ||||  | | | || ||||||||||||| ||||| ||||||||||||    
T  1545 agttgttgttgatgaaattacatgctcaagatatatatatatatatatgtatatatttctcaaaattggtgtagtatgatgttgttgttg 1456  T

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Target: scaffold0594 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 2288 - 2223
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||||||||||||| |||  ||| |||||| ||||||||||||||||||||||| || |||||||    
T  2288 tgggactagctttctataataatgggttgtataattctgaaaaagggtttaacatagttgttgttg 2223  T

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Target: scaffold0183 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 11169 - 11120
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 183  Q
    |||||||||||||||| ||||||||||||| | |||||||||||||||||    
T  11169 agttgttgatgatgaaattacatgctcaagatgtgtatatatgtatactt 11120  T

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Target: scaffold0174 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 11657 - 11592
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||||||  |||||||||| ||| |||||| ||||||||||||||||||||||| || |||||||    
T  11657 tgggactaaatttctctaaaaatgggttgtataattctgaaaaagggtttaacatcgttgttgttg 11592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 5495 - 5445
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggttta 126  Q
    |||||||| ||||||||||  |||||||||| |||||||||||||||||||    
T  5495 tgggactacctttctctaataatgagttgtataattctgaaaaagggttta 5445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 67583 - 67522
Alignment:
Q  21 ggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    |||||||||||||||||||| ||||| | |||| ||||||||||||||| ||| ||||||||    
T  67583 ggtataatcatatagcaatgctgtaatcagttttggggattgaattggggaaaattgggact 67522  T

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Target: scaffold0213 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 19248 - 19184
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgtt 140  Q
    |||||||| ||||||||||   | ||||||| ||||||||||||||||||||| |||||||||||    
T  19248 tgggactaactttctctaattctaagttgtataattctgaaaaagggtttaaccttgtagttgtt 19184  T

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Target: scaffold0064 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 68866 - 68806
Alignment:
Q  22 gtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    ||||||||||||||||||||||||| | |||| ||||||||||||||| ||| ||| ||||    
T  68866 gtataatcatatagcaatgttgtaatcagttttggggattgaattggggaaaattgagact 68806  T

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Target: scaffold0431 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 5674 - 5608
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctga--aaaagggtttaacattgtagttgtt 140  Q
    |||||||||||||||||||  ||| |||||| ||||||||  ||||||||||||| |||||||||||    
T  5674 tgggactagctttctctaataatgggttgtataattctgaaaaaaagggtttaactttgtagttgtt 5608  T

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Target: scaffold0328 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 18651 - 18717
Alignment:
Q  76 tgggactagctttctctaaagatgagttgt-acaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||||||||||||||  ||||||||| | |||| ||||||| |||||||| ||||||||||||    
T  18651 tgggactagctttctctaataatgagttgtaataattttgaaaaaaggtttaaccttgtagttgttg 18717  T

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Target: scaffold0247 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 1114 - 1052
Alignment:
Q  79 gactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||||||||||||||  |||  ||||| ||||||||||||||||||||| |||||| |||||    
T  1114 gactagctttctctaataatggattgtataattctgaaaaagggtttaaccttgtagatgttg 1052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1256 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1256
Description:

Target: scaffold1256; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 2235 - 2276
Alignment:
Q  100 agttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||||| ||||||||||||||||||||| ||||||||||||    
T  2235 agttgtataattctgaaaaagggtttaaccttgtagttgttg 2276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1204 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1204
Description:

Target: scaffold1204; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 148 - 197
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 183  Q
    |||||||||||||||| ||||||||||||  ||||| |||||||||||||    
T  148 agttgttgatgatgaaattacatgctcaatatatgtttatatgtatactt 197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0452 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0452
Description:

Target: scaffold0452; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 2843 - 2892
Alignment:
Q  134 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 183  Q
    |||||||||||||||| ||||||||||||  ||||| |||||||||||||    
T  2843 agttgttgatgatgaaattacatgctcaatatatgtttatatgtatactt 2892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 6456 - 6395
Alignment:
Q  79 gactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgtt 140  Q
    ||||||||||||||||  |||||||||  ||||||||||||||| ||||  |||||||||||    
T  6456 gactagctttctctaataatgagttgtgtaattctgaaaaagggattaatcttgtagttgtt 6395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 66083 - 66148
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||||||| ||||| |||  ||| |||||| ||||||||||||||||||||||| || |||||||    
T  66083 tgggactagatttctttaataatgggttgtataattctgaaaaagggtttaacatggttgttgttg 66148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0672 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 7643 - 7703
Alignment:
Q  22 gtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    ||||||||||||||||||| ||||| | |||| ||||||||||||| | ||| ||||||||    
T  7643 gtataatcatatagcaatgctgtaaccagttttggggattgaattgaggaaagttgggact 7703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 26743 - 26703
Alignment:
Q  101 gttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  26743 gttgtataattctgaaaaagggtttaactttgtagttgttg 26703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 16455 - 16495
Alignment:
Q  101 gttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  16455 gttgtataattctgaaaaagggtttaaccttgtagttgttg 16495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 18712 - 18777
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    ||||| || ||||||||||  |||||||||| |||||| ||||| |||||| | ||||||||||||    
T  18712 tgggattaactttctctaataatgagttgtataattcttaaaaacggtttagccttgtagttgttg 18777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 3688 - 3625
Alignment:
Q  19 taggtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    |||||||||| ||||||||||| ||||| | | || ||||||||||||||| ||| ||||||||    
T  3688 taggtataattatatagcaatgctgtaatcagctttggggattgaattggggaaaattgggact 3625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 1677 - 1626
Alignment:
Q  15 atcataggtataatcatatagcaatgttgtaaactgtttaggggattgaatt 66  Q
    ||||||||| |||||||||||||||| ||||| | |||| ||||||||||||    
T  1677 atcataggtgtaatcatatagcaatgctgtaatcagttttggggattgaatt 1626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 143
Target Start/End: Original strand, 59698 - 59733
Alignment:
Q  108 aattctgaaaaagggtttaacattgtagttgttgat 143  Q
    ||||||||||||||||||||| ||||||||||||||    
T  59698 aattctgaaaaagggtttaactttgtagttgttgat 59733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 4977 - 4912
Alignment:
Q  76 tgggactagctttctctaaagatgagttgtacaattctgaaaaagggtttaa-cattgtagttgttg 141  Q
    |||||||||||||||||||  ||| |||||| ||||||| |||||||||||| | ||||||||||||    
T  4977 tgggactagctttctctaataatg-gttgtataattctgtaaaagggtttaacctttgtagttgttg 4912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 35201 - 35262
Alignment:
Q  80 actagctttctctaaagatgagttgtacaattctgaaaaagggtttaacattgtagttgttg 141  Q
    |||||||||| ||||  ||| |||||| |||||| |||||||||||||||| || |||||||    
T  35201 actagctttccctaataatgggttgtataattctaaaaaagggtttaacatggttgttgttg 35262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 140
Target Start/End: Original strand, 10492 - 10520
Alignment:
Q  112 ctgaaaaagggtttaacattgtagttgtt 140  Q
    |||||||||||||||||||||||||||||    
T  10492 ctgaaaaagggtttaacattgtagttgtt 10520  T

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Target: scaffold0216 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 22220 - 22160
Alignment:
Q  22 gtataatcatatagcaatgttgtaaactgtttaggggattgaattgggaaaatttgggact 82  Q
    ||||||||||||| ||||| ||||| | |||| ||||||||||||||  ||| ||||||||    
T  22220 gtataatcatataacaatgctgtaatcagttttggggattgaattggagaaaattgggact 22160  T

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