View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0725_low_8 (Length: 307)
Name: NF0725_low_8
Description: NF0725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0725_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 30 - 292
Target Start/End: Complemental strand, 1050451 - 1050189
Alignment:
| Q |
30 |
atttcatcaaacaatttacatctcatcaatattctcttttcaaatcaatcttcctatttgtcacacctcatgaagttgtgttagcttttcacgaacaaaa |
129 |
Q |
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| T |
1050451 |
atttcattaaacaatttacatcttatcaacattctcttttcaaatcaatcttcatatttgtcacacctcatgaagttgtgttagcttttcacgaacaaaa |
1050352 |
T |
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| Q |
130 |
tccgtcactagagatgcctatttctttccgtccggatatgcttatcaaaggaagtgtatgcggttgttccaacggtttattcttgtgttgtaacaaccga |
229 |
Q |
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| T |
1050351 |
tccgtcactagagaggcctatctcttttggtctggatatgcttatcaaaggaagcgtatgcggttgttccaacggtttattcttgtgttgtaagaatcga |
1050252 |
T |
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| Q |
230 |
tacacgtatggtatcgactattatgtttacgatccacttatgaaaaaatgtgtccctatacct |
292 |
Q |
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| T |
1050251 |
tacacctatggtatcgactattatatttacgatccacttatgaaaaaatgtgtccctatacct |
1050189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 30 - 274
Target Start/End: Complemental strand, 42875969 - 42875707
Alignment:
| Q |
30 |
atttcatcaaacaatttacatctcatcaatattctcttttcaaatcaatcttcctatttgtcacacctcatgaagttgtgttagcttttcacgaacaa-- |
127 |
Q |
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| T |
42875969 |
atttcataaaacaattcacatctcatcaacattctcttttcaaatcaatgttgatattcgtcacaccccgtgaacttatgttagctttttgggatcaatc |
42875870 |
T |
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| Q |
128 |
-------aatccgtcactagagatgcctatttctttccgtccggatatgcttatcaaaggaagtg---------tatgcggttgttccaacggtttattc |
211 |
Q |
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| T |
42875869 |
tcaacataatcagtctctagagattcctatctctttccctccggatatgctcatcaaaggtaaaggcagcagcatatgcggttgttccaacggcttattc |
42875770 |
T |
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| Q |
212 |
ttgtgttgtaacaaccgatacacgtatggtatcgactattatgtttacgatccacttatgaaa |
274 |
Q |
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| T |
42875769 |
ttgtgttgtaacaaccggtacacatatggtagcggctattatgtttatgatccgcttgtgaaa |
42875707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 42750950 - 42751036
Alignment:
| Q |
29 |
aatttcatcaaacaatttacatctcatcaatattctcttttcaaatcaatcttcctatttgtcacacctcatgaagttgtgttagct |
115 |
Q |
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| T |
42750950 |
aatttcctaaaacaattcacgtctcatcaatactctcttttcaaatcaatcttgatatttgtcacacctcatgaacttatgttagct |
42751036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 267
Target Start/End: Original strand, 42751055 - 42751229
Alignment:
| Q |
99 |
atgaagttgtgttagcttttcacgaacaaaatccgtcactagagatgcctatttctttccgtccggatatgcttatcaaaggaagtg------tatgcgg |
192 |
Q |
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| T |
42751055 |
atgaacttatgttagcttttggggaacaaaatcagcctctagagattcctattcctttccctctggatatgatcatcaaagttactggtagcatatgtgg |
42751154 |
T |
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| Q |
193 |
ttgttccaacggtttattcttgtgttgtaacaaccgatacacgtatggtatcgactattatgtttacgatccact |
267 |
Q |
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| T |
42751155 |
ttgttccaatggtttattcttgtgttctaagaatcgggacacatgtgctaccgtctattatgtttatgatccact |
42751229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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