View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0725_low_9 (Length: 273)

Name: NF0725_low_9
Description: NF0725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0725_low_9
NF0725_low_9
[»] chr3 (9 HSPs)
chr3 (40-242)||(5677814-5678016)
chr3 (40-241)||(5668320-5668521)
chr3 (42-242)||(5743432-5743629)
chr3 (42-242)||(5780391-5780588)
chr3 (105-241)||(5692106-5692242)
chr3 (116-241)||(5791647-5791772)
chr3 (42-241)||(5751114-5751313)
chr3 (42-241)||(5788073-5788272)
chr3 (42-82)||(5692070-5692110)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 40 - 242
Target Start/End: Original strand, 5677814 - 5678016
Alignment:
Q  40 gacatcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaannnnnnnatcaagtgtaacatctttgattaaaacatcaagtccc 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||| ||||||||||||||||||||||||    
T  5677814 gacatcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaatttttttatcaagtgtaacttctttgattaaaacatcaagtccc 5677913  T
Q  140 acacttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtct 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5677914 acacttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcatttgtgagtttgcatctcaatctctattgtct 5678013  T
Q  240 gtg 242  Q
    |||    
T  5678014 gtg 5678016  T

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Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 40 - 241
Target Start/End: Original strand, 5668320 - 5668521
Alignment:
Q  40 gacatcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaannnnnnnatcaagtgtaacatctttgattaaaacatcaagtccc 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||| ||||||||||||||||||||||||    
T  5668320 gacatcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaattattttatcaagtgtaacttctttgattaaaacatcaagtccc 5668419  T
Q  140 acacttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtct 239  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5668420 acacttttcaagtcacgagagatgcagatatgttattctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtct 5668519  T
Q  240 gt 241  Q
    ||    
T  5668520 gt 5668521  T

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Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 5743432 - 5743629
Alignment:
Q  42 catcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaannnnnnnatcaagtgtaacatctttgattaaaacatcaagtcccac 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |        |||||||| |  ||||||||||||||||||||||||||    
T  5743432 catcatcagctaccatatgttctatttggtctttcacaagttatattttttctattatt---tcaagtgtgatttctttgattaaaacatcaagtcccac 5743528  T
Q  142 acttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtctgt 241  Q
     |||||||||||| || | |||||||||||| |||||   | ||||||||| |||| ||||||||||||||||||||||||||||||||| |||| ||||    
T  5743529 tcttttcaagtcaagaaatatgcagatatgtgtttctggtggtgaaaaacaagaagttgtgtggcgtttgtgagtttgcatctcaatctccattggctgt 5743628  T

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Target: chr3; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 5780391 - 5780588
Alignment:
Q  42 catcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaannnnnnnatcaagtgtaacatctttgattaaaacatcaagtcccac 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |        |||||||| |  ||||||||||||||||||||||||||    
T  5780391 catcatcagctaccatatgttctatttggtctttcacaagttatattttttctattatt---tcaagtgtgatttctttgattaaaacatcaagtcccac 5780487  T
Q  142 acttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtctgt 241  Q
     |||||||||||| || | |||||||||||| |||||   | ||||||||| |||| ||||||||||||||||||||||||||||||||| |||| ||||    
T  5780488 tcttttcaagtcaagaaatatgcagatatgtgtttctggtggtgaaaaacaagaagttgtgtggcgtttgtgagtttgcatctcaatctccattggctgt 5780587  T

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Target: chr3; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 105 - 241
Target Start/End: Original strand, 5692106 - 5692242
Alignment:
Q  105 caagtgtaacatctttgattaaaacatcaagtcccacacttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtg 204  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||| |||||| |||||| ||||||| ||     
T  5692106 caagtgtaacttctttgattaaaacatcaagtcccacccttttcaagtcaggagatatgcagatatgtttttctgacgatggaaaacaagaagctgcgtc 5692205  T
Q  205 gcgtttgtgagtttgcatctcaatctctattgtctgt 241  Q
    || |||||||||||||||||||||||| |||||||||    
T  5692206 gcctttgtgagtttgcatctcaatctccattgtctgt 5692242  T

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Target: chr3; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 116 - 241
Target Start/End: Original strand, 5791647 - 5791772
Alignment:
Q  116 tctttgattaaaacatcaagtcccacacttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgag 215  Q
    ||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||| ||||| ||| ||||||||| |||  |||||||||||||||||    
T  5791647 tctttgattaaaacatcaagtcccacactcttcaagtcaagagatatgcagatatgtgtttctgacggtgaaaaacaagaaattgtgtggcgtttgtgag 5791746  T
Q  216 tttgcatctcaatctctattgtctgt 241  Q
    |||||||||||||||| |||||||||    
T  5791747 tttgcatctcaatctccattgtctgt 5791772  T

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Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 42 - 241
Target Start/End: Original strand, 5751114 - 5751313
Alignment:
Q  42 catcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaannnnnnnatcaagtgtaacatctttgattaaaacatcaagtcccac 141  Q
    ||||||||||||| || ||||||||||||||| ||||||||||||||||||| |       | | ||||| |  |||||||||||||||||||||||||     
T  5751114 catcatcagctactatgtgttctatttggtctgtcacaagttatatcttttctattagtttaacgagtgtgatttctttgattaaaacatcaagtcccaa 5751213  T
Q  142 acttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtctgt 241  Q
     ||||| |||||  |||  ||| |||||||| ||| | ||| |||| | || |||| ||||||||||||||||||||||||||||||||| |||||||||    
T  5751214 ccttttgaagtcctgaggtatgaagatatgtgtttatgacggtgaacatcaagaagttgtgtggcgtttgtgagtttgcatctcaatctccattgtctgt 5751313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 42 - 241
Target Start/End: Original strand, 5788073 - 5788272
Alignment:
Q  42 catcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaannnnnnnatcaagtgtaacatctttgattaaaacatcaagtcccac 141  Q
    ||||||||||||| || ||||||||||||||| ||||||||||||||||||| |       | | ||||| |  |||||||||||||||||||||||||     
T  5788073 catcatcagctactatgtgttctatttggtctgtcacaagttatatcttttctattagtttaacgagtgtgatttctttgattaaaacatcaagtcccaa 5788172  T
Q  142 acttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtctgt 241  Q
     ||||| |||||  |||  ||| |||||||| ||| | ||| |||| | || |||| ||||||||||||||||||||||||||||||||| |||||||||    
T  5788173 ccttttgaagtcctgaggtatgaagatatgtgtttatgacggtgaacatcaagaagttgtgtggcgtttgtgagtttgcatctcaatctccattgtctgt 5788272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 5692070 - 5692110
Alignment:
Q  42 catcatcagctaccatatgttctatttggtctttcacaagt 82  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5692070 catcatcagctaccatatgttctatttggtctttcacaagt 5692110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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