View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0726-Insertion-1 (Length: 722)

Name: NF0726-Insertion-1
Description: NF0726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0726-Insertion-1
NF0726-Insertion-1
[»] chr2 (1 HSPs)
chr2 (8-722)||(14173466-14174169)


Alignment Details
Target: chr2 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 8 - 722
Target Start/End: Original strand, 14173466 - 14174169
Alignment:
Q  8 taatcaatttccagtggatacataaaattgtagtagccaacgctaaagatggatgtctgtaaaaatttgggcaccatctgaaattgaaatgcagtgtttg 107  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  14173466 taatcaatttccagtggatacataaaattgtagtagccaactctaaagatggatgtctgtaaaaatttgggcaacatctgaaattgaaatgcagtgtttt 14173565  T
Q  108 gacaaaataacacatttcctttttgcctttgttgtgagtttgtaaaagtcacacgaaaacaagttgactgacgtattttattcatcgagtacctttcggt 207  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||    
T  14173566 gacaaaataacacagttcctttttgcctttgttgtgagtttgtaaaagtcacacgaaaacaagttgactgacatgttttattcatcgagtacatttcggt 14173665  T
Q  208 agaaggtatatgattttgcaatgctttgtcgagttactaattaattggaaaagagaaaaaccattaccattgggaagtggtgagagttgagtttctcttt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  14173666 agaaggtatatgattttgcaatgctttgtcgagttactaattaattggaaaagagaaaaaccattaccattgggaagtggtgagagttgagtttctc--- 14173762  T
Q  308 aaggaaggtcttagcctcttaggtttaataagttttgtaaattgaaaacacgaatagagctgtttccttcaaatgagtctatttagttcaactcaaatta 407  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14173763 -------gtcttagcctcttaggtttaataagttttgtaaattgaaaacacgaatagagctgtttccttcaaatgagtctatttagttcaactcacatta 14173855  T
Q  408 ttgtattaataacttctggacacttagttttaaattaaaaaatgcaaagagggatgtccccctcaaatcacttgcttgtcaggagaagtgaatgagaaga 507  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14173856 ttgtattaataacttctggacacttagttttagattaaaaaatgcaaagagggatgtccccctcaaatcacttgcttgtcaggagaagtgaatgagaaga 14173955  T
Q  508 tgatcaatcctacttaggtttagtttggtttgnnnnnnnnggatctgcaagttggcatttgtttgaaaagaatgaaaaatttgaaaggtaatataaaaat 607  Q
    ||||||||||||||| ||||||||||||||||        |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14173956 tgatcaatcctacttgggtttagtttggtttg-tttttttggatctacaagttggcgtttgtttgaaaagaatgaaaaatttgaaaggtaatataaaaat 14174054  T
Q  608 tgagaaagatggaaagacctgtattgacattgcataaagtaattaagaaaatgagtttatcattaactttattttggaactaaagtgtaaaagcatcact 707  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  14174055 tgagaaagatggaacgacctgtattgacattgcataaagtaattaagaaaatgagtttatcatcaagtttattttggaactaaagtgtaaaagcatcact 14174154  T
Q  708 ataagtagcgagatc 722  Q
    |||||| ||||||||    
T  14174155 ataagttgcgagatc 14174169  T

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