View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0726-Insertion-2 (Length: 616)
Name: NF0726-Insertion-2
Description: NF0726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0726-Insertion-2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 8 - 616
Target Start/End: Original strand, 3186670 - 3187278
Alignment:
| Q |
8 |
gataaatcagtcatgctaccatccacatgtaaatagtttctataccaatggtgaactaatcccttcatttatgcattacttccttctggcaatgtaatca |
107 |
Q |
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| T |
3186670 |
gataaatcagtcatgctatcttccacatgtaaatagtttctataccaatggtgaactaatcccttcatttatgcattacttccttctggcaatgtaatca |
3186769 |
T |
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| Q |
108 |
atcttgtagttgaatcatacagcattgcagttccacagctgaggcataaatttggattgttatatttgtatctaccatatatcatattaatttgataaaa |
207 |
Q |
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| T |
3186770 |
atcttgtagttgaatcatacagcatcgcagttccacagctgaggcataaatttggattgttatatttgtatctaccatatatcatattaatttgataaaa |
3186869 |
T |
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| Q |
208 |
gaaaatgaatatggaagtaatgacatgacttaataatgcacaaaaggtttcatacttacttctcacatttgactttgttggtggaatctccacttgaaat |
307 |
Q |
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| T |
3186870 |
gaaaatgaatatggaagtaatgacatgacttaataatgcacaaaaggtttcatacttacttctcacatttgactttgttggtggaatctccacttgaaat |
3186969 |
T |
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| Q |
308 |
tgacaatatagtcccaaagaaggaggtgttttcagtaccacaattaggacatggaccctttaattaaaaataaactatcttagtatatgtaatggttcag |
407 |
Q |
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| T |
3186970 |
tgacaatatagtcccaaagaaggaggtgttttcagtaccacaattaggacatggaccctttaattaaaaataaactatcttagtatatgtaatggttcag |
3187069 |
T |
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| Q |
408 |
tataataactcaacagagataaattacaaaaactataccttcaaaatcaagaaatcttttataattgcatttgtaattgactgagcaaaccacagaatga |
507 |
Q |
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| T |
3187070 |
tataataactcaacagagataaattacaaaaactataccttcaaaatcaagaaatcttttataattgcatttgtaattgactgagcaaaccacagaatga |
3187169 |
T |
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| Q |
508 |
agggaactgctgcaaaccaagttaaaatgaaactgaaaggttctggaatctgcagttaacaattcacacaacctttatcaatcattagatgaatcaaaga |
607 |
Q |
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| T |
3187170 |
agggaactgctgcaaaccaagttaaaatgaaactgaaaggttctggaatctgcagttaacaattcacacaacctttatcaatcattagatgaatcaaaga |
3187269 |
T |
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| Q |
608 |
aatttgtaa |
616 |
Q |
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| T |
3187270 |
aatttgtaa |
3187278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 42464074 - 42464002
Alignment:
| Q |
77 |
tatgcattacttccttctggcaatgtaatcaatcttgtagttgaatcatacagcattgcagttccacagctga |
149 |
Q |
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| T |
42464074 |
tatgcattacttcattctggcaatgtaatcaatcttgtaccggaatcatacaccatttcagttccacagctga |
42464002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 273 - 370
Target Start/End: Complemental strand, 42463885 - 42463788
Alignment:
| Q |
273 |
catttgactttgttggtggaatctccacttgaaattgacaatatagtcccaaagaaggaggtgttttcagtaccacaattaggacatggaccctttaa |
370 |
Q |
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| T |
42463885 |
catttgactttgttgttggaaccaccgcttgaaatcgacagtattgttccaaagaaggaggtattttcagttccgcagtttggacagggaccctttaa |
42463788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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