View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0726-Insertion-3 (Length: 339)
Name: NF0726-Insertion-3
Description: NF0726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0726-Insertion-3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 339
Target Start/End: Complemental strand, 30899945 - 30899614
Alignment:
| Q |
8 |
tccttgcccgcacttttccaaaacaagataacgaaatttagtataacaagcaaaatcatgcatcaacaaagaaagcgatcaaaaagataaatattggaac |
107 |
Q |
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| T |
30899945 |
tccttgcccacacttttccaaaacaagataacgaaatttagtataacaagcaaaatcatgcatcaacaaagaaagcgatcaaaaagataaatattggaac |
30899846 |
T |
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| Q |
108 |
agattatcccttgttagagtgaacctcatcttcaacatctacattgcttttggtctctcatattctacttacctacatgttgatccctagagaatggtta |
207 |
Q |
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| T |
30899845 |
agattatcccttgttagagtgaacctcatcttcaacatctacattgcttttggtctctcatattctacttacctacatgttgatccctagagaatggtta |
30899746 |
T |
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| Q |
208 |
aaaattgaaaacaggaagtgttgttgtaaacaaataaaaaacccatgaatgtaggtgccttttgtaaatacacagtgccaaggaagtattagacagcgaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30899745 |
aaaattgaaaacaggaagtgttgttgtaaacaaataaaaaacccatgaatgtaggtgccttttgtaaatacacagtgccaaggaagtattagacagcgaa |
30899646 |
T |
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| Q |
308 |
atcaaaaagatgttggtgacatgcaaattaag |
339 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
30899645 |
atcaaaaagatgttggtgacatgcaaattaag |
30899614 |
T |
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