View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0726_high_10 (Length: 231)

Name: NF0726_high_10
Description: NF0726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0726_high_10
NF0726_high_10
[»] chr7 (2 HSPs)
chr7 (144-231)||(11098758-11098845)
chr7 (1-81)||(11098616-11098696)
[»] chr6 (2 HSPs)
chr6 (144-231)||(17998484-17998571)
chr6 (1-81)||(17998633-17998713)
[»] chr8 (2 HSPs)
chr8 (144-227)||(36283480-36283563)
chr8 (1-81)||(36283625-36283705)
[»] chr1 (1 HSPs)
chr1 (155-222)||(19913150-19913217)
[»] chr5 (1 HSPs)
chr5 (155-227)||(40571639-40571711)
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-70)||(128644-128713)
[»] chr4 (3 HSPs)
chr4 (12-68)||(723323-723379)
chr4 (12-69)||(10755810-10755867)
chr4 (12-69)||(10969579-10969636)


Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 11098758 - 11098845
Alignment:
Q  144 gagacaatatatttccacttgttgggtaagtaatgctaggaaagaattaagaaattgtatatttaagaactgacataaccgtagctaa 231  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11098758 gagacaatatatttccacttgttgggtaaataatgctaggaaagaattaagaaattgtatatttaagaactgacataactgtagctaa 11098845  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 11098616 - 11098696
Alignment:
Q  1 tcatcatcatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaacatggaagaatgg 81  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11098616 tcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaacatggaagaatgg 11098696  T

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Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 144 - 231
Target Start/End: Complemental strand, 17998571 - 17998484
Alignment:
Q  144 gagacaatatatttccacttgttgggtaagtaatgctaggaaagaattaagaaattgtatatttaagaactgacataaccgtagctaa 231  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17998571 gagacaatatatttccacttgttgggtaaataatgctaggaaagaattaagaaattgtatatttaagaactgacataactgtagctaa 17998484  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 17998713 - 17998633
Alignment:
Q  1 tcatcatcatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaacatggaagaatgg 81  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17998713 tcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaacatggaagaatgg 17998633  T

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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 36283563 - 36283480
Alignment:
Q  144 gagacaatatatttccacttgttgggtaagtaatgctaggaaagaattaagaaattgtatatttaagaactgacataaccgtag 227  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36283563 gagacaatatatttccacttgttggataagtaatgctaggaaagaattaagaaattgtatatttaagaactgacataactgtag 36283480  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 36283705 - 36283625
Alignment:
Q  1 tcatcatcatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaacatggaagaatgg 81  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36283705 tcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaacttggaagaatgg 36283625  T

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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 19913217 - 19913150
Alignment:
Q  155 tttccacttgttgggtaagtaatgctaggaaagaattaagaaattgtatatttaagaactgacataac 222  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19913217 tttccacttgttgggtaagtaatgctaggcaagaattaagaaattgtatatttaagaactgacataac 19913150  T

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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 40571711 - 40571639
Alignment:
Q  155 tttccacttgttgggtaagtaatgctaggaaagaattaagaaattgtatatttaagaactgacataaccgtag 227  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||    
T  40571711 tttccgcttgttgggtaagtaatgctaggcaagaattaagaaattgtatatttaagaaccgacataactgtag 40571639  T

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Target: scaffold0010 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 128713 - 128644
Alignment:
Q  1 tcatcatcatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaaca 70  Q
    |||||| |||||||||||| |||||||||| || ||||| ||| |||||||| ||| || ||||||||||    
T  128713 tcatcaccatcatagtcatccttatgaacatgcagagatgaatacattatggtttctcttgatgccaaca 128644  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 723323 - 723379
Alignment:
Q  12 atagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaa 68  Q
    ||||||||||| |||| ||||||||||| |||||||||||| | | |||||||||||    
T  723323 atagtcattctcatgagcaggcggagatgaattcattatggttcctctcgatgccaa 723379  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 10755810 - 10755867
Alignment:
Q  12 atagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaac 69  Q
    |||||||| || |||| ||||||||||| |||||||| ||| ||| ||||||||||||    
T  10755810 atagtcatcctcatgagcaggcggagatgaattcattgtggtttctctcgatgccaac 10755867  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 10969579 - 10969636
Alignment:
Q  12 atagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaac 69  Q
    |||||||| || |||| ||||||||||| |||||||| ||| ||| ||||||||||||    
T  10969579 atagtcatcctcatgagcaggcggagatgaattcattgtggtttctctcgatgccaac 10969636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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