View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0726_high_11 (Length: 204)

Name: NF0726_high_11
Description: NF0726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0726_high_11
NF0726_high_11
[»] chr5 (6 HSPs)
chr5 (1-159)||(19422524-19422682)
chr5 (1-159)||(20087409-20087567)
chr5 (1-159)||(30824215-30824373)
chr5 (63-159)||(19681465-19681561)
chr5 (70-159)||(30664487-30664576)
chr5 (3-65)||(19681580-19681642)
[»] chr2 (4 HSPs)
chr2 (1-159)||(11747601-11747759)
chr2 (1-159)||(37017452-37017610)
chr2 (3-159)||(44335167-44335344)
chr2 (70-148)||(6003783-6003861)
[»] chr8 (3 HSPs)
chr8 (1-159)||(42610393-42610551)
chr8 (63-148)||(8591749-8591834)
chr8 (3-65)||(8591853-8591915)
[»] chr4 (4 HSPs)
chr4 (7-159)||(10228664-10228837)
chr4 (63-159)||(20171978-20172074)
chr4 (3-148)||(5056969-5057135)
chr4 (3-58)||(20171897-20171952)
[»] chr6 (3 HSPs)
chr6 (63-159)||(13049723-13049819)
chr6 (3-159)||(22025059-22025236)
chr6 (3-65)||(13049838-13049900)
[»] chr3 (1 HSPs)
chr3 (3-159)||(26523968-26524145)
[»] chr7 (1 HSPs)
chr7 (3-159)||(46486867-46487044)
[»] chr1 (1 HSPs)
chr1 (131-159)||(6409436-6409464)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 7e-85; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 19422682 - 19422524
Alignment:
Q  1 aatcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaacctcatccctctcaacccgaaactttgaacgatgaaatcaatatattcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19422682 aatcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaacctcatccctctcaacccgaaactttgaacgatgaaatcaatatattcac 19422583  T
Q  101 ctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19422582 ctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 19422524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 20087567 - 20087409
Alignment:
Q  1 aatcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaacctcatccctctcaacccgaaactttgaacgatgaaatcaatatattcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20087567 aatcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaacctcatccctctcaacccgaaactttgaacgatgaaatcaatatattcac 20087468  T
Q  101 ctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20087467 ctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 20087409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 30824215 - 30824373
Alignment:
Q  1 aatcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaacctcatccctctcaacccgaaactttgaacgatgaaatcaatatattcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30824215 aatcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaacctcatccctctcaacccgaaactttgaacgatgaaatcaatatattcac 30824314  T
Q  101 ctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30824315 ctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 30824373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 63 - 159
Target Start/End: Complemental strand, 19681561 - 19681465
Alignment:
Q  63 caacccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 159  Q
    |||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||  |||||||||    
T  19681561 caacccgaaactttaaacgctgaaatcgatatattcacctcccaattccaagaccaacgaaatgatgaagttcaagatgatgaagatgatgatgatg 19681465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 70 - 159
Target Start/End: Complemental strand, 30664576 - 30664487
Alignment:
Q  70 aaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 159  Q
    ||||||| ||||||||||| |||||||||||||||||| |||| |||||  ||| ||||||||||||||||||||| ||| |||||||||    
T  30664576 aaactttaaacgatgaaataaatatattcacctcccaaatccaggaccactcaaatgatgaagttcaagatgatgatgacgatgatgatg 30664487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 19681642 - 19681580
Alignment:
Q  3 tcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaacctcatccctctcaa 65  Q
    ||||||||| |||||||||||||||||||| |||||  |||||||||||||||||||||||||    
T  19681642 tcacagtgggcacaaaatgtgtacgaaccatcacaaagaataactcaacctcatccctctcaa 19681580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 159; Significance: 7e-85; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 11747759 - 11747601
Alignment:
Q  1 aatcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaacctcatccctctcaacccgaaactttgaacgatgaaatcaatatattcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11747759 aatcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaacctcatccctctcaacccgaaactttgaacgatgaaatcaatatattcac 11747660  T
Q  101 ctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11747659 ctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 11747601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 37017452 - 37017610
Alignment:
Q  1 aatcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaacctcatccctctcaacccgaaactttgaacgatgaaatcaatatattcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37017452 aatcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaacctcatccctctcaacccgaaactttgaacgatgaaatcaatatattcac 37017551  T
Q  101 ctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37017552 ctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 37017610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 44335344 - 44335167
Alignment:
Q  3 tcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaacctcatccctctcaa---------------------cccgaaactttgaacg 81  Q
    |||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||                     ||||||||||| ||||    
T  44335344 tcacagtggtcacaaaatgtgtacgaaccatcacaaagaataactcaacctcatccctctcaaacaccatcccgttcaacacaacccgaaactttaaacg 44335245  T
Q  82 atgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 159  Q
     ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||  |||||||||    
T  44335244 ctgaaatcgatatattcacctcccaattccaagaccaacgaaatgatgaagttcaagatgatgaagatgatgatgatg 44335167  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 148
Target Start/End: Original strand, 6003783 - 6003861
Alignment:
Q  70 aaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaaga 148  Q
    ||||||| ||||||||||| |||||||||||||||||| |||| |||||| ||| ||||||||   | |||||||||||    
T  6003783 aaactttaaacgatgaaataaatatattcacctcccaaatccaggaccaatcaaatgatgaagacgatgatgatgaaga 6003861  T

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Target: chr8 (Bit Score: 151; Significance: 4e-80; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 42610551 - 42610393
Alignment:
Q  1 aatcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaacctcatccctctcaacccgaaactttgaacgatgaaatcaatatattcac 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42610551 aatcacagtggtcacaaaatgtgtacgaaccaccgcaactaataactcaacctcatccctctcaacccgaaactttgaacgatgaaatcaatatattcac 42610452  T
Q  101 ctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42610451 ctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgacgatg 42610393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 8591834 - 8591749
Alignment:
Q  63 caacccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaaga 148  Q
    |||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||  || ||||||||||||||||||||||||    
T  8591834 caactcgaaactttaaacgctgaaatcgatatattcacctcccaattccaagaccaagaaaatgatgaagttcaagatgatgaaga 8591749  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 8591915 - 8591853
Alignment:
Q  3 tcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaacctcatccctctcaa 65  Q
    ||||||||||||||||||||||| |||||  |||||  ||||||||||||| || ||||||||    
T  8591915 tcacagtggtcacaaaatgtgtatgaaccttcacaaagaataactcaaccttattcctctcaa 8591853  T

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Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 7 - 159
Target Start/End: Original strand, 10228664 - 10228837
Alignment:
Q  7 agtggtcacaaaatgtgtacgaaccaccacaactaataactcaacctcatccctctcaa---------------------cccgaaactttgaacgatga 85  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||                     ||| |||| || ||||||||    
T  10228664 agtggtcacaaaatgtgtacgaaccatcacaaataataactcaacctcatccctctcaaacaccatctcgttcaacacaacccaaaaccttaaacgatga 10228763  T
Q  86 aatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 159  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  10228764 aatcaatatattcacctcccaatttcaagaccaaccaaatgatgaagttcaagatgatgaagacgatgatgatg 10228837  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 63 - 159
Target Start/End: Original strand, 20171978 - 20172074
Alignment:
Q  63 caacccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 159  Q
    |||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||  |||||||||    
T  20171978 caacccgaaactttaaacgctgaaatcgatatattcacctcccaattccaagaccaacgaaatgatgaagttcaagatgatgaagatgatgatgatg 20172074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 5056969 - 5057135
Alignment:
Q  3 tcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaacctcatccctctcaa---------------------cccgaaactttgaacg 81  Q
    |||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||                     ||||||| ||| ||||    
T  5056969 tcacagtggtcacaaaatgtgtacgaaccatcacaaagaataactcaacctcatccctctcaaacaccatcccgttcaacacaacccgaaattttaaacg 5057068  T
Q  82 atgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaaga 148  Q
    |||||||| ||||||| |||||||||||||| ||||||| || ||||||||||||||||||||||||    
T  5057069 atgaaatcgatatatttacctcccaattccatgaccaacgaaatgatgaagttcaagatgatgaaga 5057135  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 20171897 - 20171952
Alignment:
Q  3 tcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaacctcatcc 58  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||||||||||||    
T  20171897 tcacagtggtcacaaaatgtgtacgaaccatcacaaagaataactcaacctcatcc 20171952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 1e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 63 - 159
Target Start/End: Complemental strand, 13049819 - 13049723
Alignment:
Q  63 caacccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 159  Q
    |||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||    
T  13049819 caaccccaaactttaaacgatgaaatcactatattcacctcccaattccaagaccaaccaaatgatgaagttgaagatgatgaagacgatgatgatg 13049723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 22025236 - 22025059
Alignment:
Q  3 tcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaacctcatccctctcaa---------------------cccgaaactttgaacg 81  Q
    |||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||                     ||||||||||| ||||    
T  22025236 tcacagtggtcacaaaatgtgtacgaaccatcacaaagaataactcaacctcatccctctcaaacaccatcccgttcaacacaacccgaaactttaaacg 22025137  T
Q  82 atgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 159  Q
     ||||||| ||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||  |||||||||    
T  22025136 ctgaaatcgatatattcacctcccaattacaagaccaacgaaatgatgaagttcaagatgatgaagatgatgatgatg 22025059  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 13049900 - 13049838
Alignment:
Q  3 tcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaacctcatccctctcaa 65  Q
    ||||| |||||||||||||||||||||||| |||||  || ||||||||||||||||||||||    
T  13049900 tcacaatggtcacaaaatgtgtacgaaccatcacaaagaacaactcaacctcatccctctcaa 13049838  T

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Target: chr3 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 26524145 - 26523968
Alignment:
Q  3 tcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaacctcatccctctcaa---------------------cccgaaactttgaacg 81  Q
    |||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||                     ||||||||||| ||||    
T  26524145 tcacagtggtcacaaaatgtgtacgaaccatcacaaagaataactcaacctcatccctctcaaacaccatcccgttcaacacaacccgaaactttaaacg 26524046  T
Q  82 atgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 159  Q
     ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||  |||||||||    
T  26524045 ctgaaatcgatatattcacctcccaattccaagaccaacgaaatgatgaagttcaagatgatgaagatgatgatgatg 26523968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 46487044 - 46486867
Alignment:
Q  3 tcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaacctcatccctctcaa---------------------cccgaaactttgaacg 81  Q
    |||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||                     ||||||||||| ||||    
T  46487044 tcacagtggtcacaaaatgtgtacgaaccatcacaaagaataactcaacctcatccctctcaaacaccatcccgttcaacacaacccgaaactttaaacg 46486945  T
Q  82 atgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 159  Q
     ||||||| ||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||  |||||||||    
T  46486944 ctgaaatcgatatattcacctcccaatttcaagaccaacgaaatgatgaagttcaagatgatgaagatgatgatgatg 46486867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 159
Target Start/End: Original strand, 6409436 - 6409464
Alignment:
Q  131 agttcaagatgatgaagacaatgatgatg 159  Q
    |||||||||||||||||||||||||||||    
T  6409436 agttcaagatgatgaagacaatgatgatg 6409464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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