View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0726_high_3 (Length: 446)

Name: NF0726_high_3
Description: NF0726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0726_high_3
NF0726_high_3
[»] chr1 (5 HSPs)
chr1 (222-446)||(6871083-6871306)
chr1 (336-446)||(36472601-36472710)
chr1 (337-442)||(10799199-10799304)
chr1 (339-423)||(44751954-44752038)
chr1 (351-446)||(32423520-32423613)
[»] chr8 (6 HSPs)
chr8 (99-182)||(8486720-8486803)
chr8 (336-446)||(14239220-14239331)
chr8 (330-446)||(18069272-18069388)
chr8 (336-440)||(36665240-36665344)
chr8 (351-442)||(26055464-26055555)
chr8 (351-423)||(12020073-12020145)
[»] chr7 (2 HSPs)
chr7 (336-443)||(33084908-33085015)
chr7 (369-446)||(37829954-37830031)
[»] chr4 (5 HSPs)
chr4 (337-439)||(30979823-30979925)
chr4 (337-401)||(8456805-8456869)
chr4 (340-442)||(38020376-38020478)
chr4 (336-433)||(2097083-2097180)
chr4 (222-258)||(4271807-4271843)
[»] chr5 (3 HSPs)
chr5 (336-443)||(6296852-6296958)
chr5 (336-444)||(29814916-29815023)
chr5 (336-442)||(10635301-10635407)
[»] chr3 (3 HSPs)
chr3 (403-446)||(48308092-48308135)
chr3 (336-442)||(42529434-42529540)
chr3 (410-443)||(54913673-54913706)
[»] chr2 (2 HSPs)
chr2 (336-423)||(26009789-26009876)
chr2 (337-443)||(1652535-1652640)


Alignment Details
Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 222 - 446
Target Start/End: Original strand, 6871083 - 6871306
Alignment:
Q  222 tgtcaagtattatgggacggagggagtatcaaataacaacaacacatttgataacacgaggttcaagttgtaaaattctagttagcatgtggttnnnnnn 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||          
T  6871083 tgtcaagtattatgggacggagggagtatcaaataacaacaacacatttgataacacgaggttcaagttgtaaaactctagttagcatgtggttgggggt 6871182  T
Q  322 nnnnnnattgggacgttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggctcaaacctggacgaataagtaaatactaatct 421  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||||||||    
T  6871183 gggggg-ttgggacgttgggtagcttaattggtttgagttaagggataaggacttggatgtcctgggttcaaacctgaacgaataagtatatactaatct 6871281  T
Q  422 aataactaactactaacatttgtca 446  Q
    |||||||||||||||||||||||||    
T  6871282 aataactaactactaacatttgtca 6871306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 336 - 446
Target Start/End: Complemental strand, 36472710 - 36472601
Alignment:
Q  336 gttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggctcaaacctggacgaataagtaaatactaatctaataactaactact 435  Q
    ||||||||||| || |||| |||| ||||||||||||| |||||  ||||||| ||||||| |||| ||  || ||| |||||||||| |||||| ||||    
T  36472710 gttgggtagctcaactggtctgagctaagggataaggagttggaggtcctgggttcaaacccggacaaaggaggaaaaactaatctaacaactaa-tact 36472612  T
Q  436 aacatttgtca 446  Q
    ||||| |||||    
T  36472611 aacatctgtca 36472601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 442
Target Start/End: Original strand, 10799199 - 10799304
Alignment:
Q  337 ttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggctcaaacctggacgaataagtaaatactaatctaataactaactacta 436  Q
    |||||||||| || | ||||||| ||||||||||| | ||| |  ||||||| ||||||| ||| |||  |||||||| |||||||| |||||| |||||    
T  10799199 ttgggtagctcaactagtttgagctaagggataagtagttgaagttcctgggttcaaaccaggatgaaggagtaaatattaatctaacaactaattacta 10799298  T
Q  437 acattt 442  Q
    ||||||    
T  10799299 acattt 10799304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 423
Target Start/End: Complemental strand, 44752038 - 44751954
Alignment:
Q  339 gggtagcttaattggtttgagttaagggataaggacttggatatcctgggctcaaacctggacgaataagtaaatactaatctaa 423  Q
    |||||||| || ||||||||| ||||||||||||  |||||  | ||||| ||||||| |||| ||| |||||||| ||||||||    
T  44752038 gggtagctcaactggtttgagctaagggataaggggttggaggttctgggttcaaacccggacaaatgagtaaatattaatctaa 44751954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 446
Target Start/End: Complemental strand, 32423613 - 32423520
Alignment:
Q  351 tggtttgagttaagggataaggacttggatatcctgggctcaaacctggacgaataagtaaatactaatctaataactaactactaacatttgtca 446  Q
    ||||||||  ||||||||||| | |||||  || |||| ||||||| |||| ||  |||||||| |||||||||  ||||||| ||||||||||||    
T  32423613 tggtttgaactaagggataagaagttggagttcttgggttcaaacccggacaaaggagtaaatattaatctaat--ctaactattaacatttgtca 32423520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 8486720 - 8486803
Alignment:
Q  99 attgcttaattgcatacggtgctagtatgttgatttttgagtgactcatgttatcccgtgattcttatgaagtccaggtaaaaa 182  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||  ||||| |||||||||| ||||||||||    
T  8486720 attgcttaattgcatatggtgctagtatgttgatttttgagcgactcatgttatctagtgatccttatgaagttcaggtaaaaa 8486803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 336 - 446
Target Start/End: Complemental strand, 14239331 - 14239220
Alignment:
Q  336 gttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggctcaaacctggacgaataagt-aaatactaatctaataactaactac 434  Q
    ||||||||||| || |||| |||| || |||||||||| |||||  ||||||| | |||||||||||||| ||| ||||| ||||||||||||||||| |    
T  14239331 gttgggtagctcaactggtctgagctaggggataaggagttggaggtcctgggtttaaacctggacgaatgagtaaaatattaatctaataactaacttc 14239232  T
Q  435 taacatttgtca 446  Q
    || |||||||||    
T  14239231 taccatttgtca 14239220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 446
Target Start/End: Original strand, 18069272 - 18069388
Alignment:
Q  330 tgggacgttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggctcaaacctggacgaataagtaaatactaatctaataacta 429  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||| ||| |  || | || ||||||  |||| ||  |||||||| || || || |||||    
T  18069272 tgggaagttgggtagctcaattgatttgagttaagggataaggagttgaaggtcataggttcaaactcggacaaagtagtaaatattattccaacaacta 18069371  T
Q  430 actactaacatttgtca 446  Q
    | |||||||||||||||    
T  18069372 attactaacatttgtca 18069388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 440
Target Start/End: Complemental strand, 36665344 - 36665240
Alignment:
Q  336 gttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggctcaaacctggacgaataagtaaatactaatctaataactaactact 435  Q
    |||||||||||||| ||||||||| |||||| |||| |  |||  || ||||| ||||||| |||| ||  | |||||| |||||||| |||||||||||    
T  36665344 gttgggtagcttaactggtttgagctaagggttaagtagatggggatactgggttcaaacccggacaaaggaataaatattaatctaacaactaactact 36665245  T
Q  436 aacat 440  Q
    |||||    
T  36665244 aacat 36665240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 442
Target Start/End: Original strand, 26055464 - 26055555
Alignment:
Q  351 tggtttgagttaagggataaggacttggatatcctgggctcaaacctggacgaataagtaaatactaatctaataactaactactaacattt 442  Q
    ||||||| | ||||||||||||| |||||  || |||| |||||| || | |||  |||||||| ||||||||||||||| |||||||||||    
T  26055464 tggtttgtgataagggataaggagttggaggtcatgggttcaaacttgaatgaaagagtaaatattaatctaataactaattactaacattt 26055555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 423
Target Start/End: Original strand, 12020073 - 12020145
Alignment:
Q  351 tggtttgagttaagggataaggacttggatatcctgggctcaaacctggacgaataagtaaatactaatctaa 423  Q
    ||||||||||||||||||||||| |||||  ||||||| |||||||   | |||| |||||||| ||||||||    
T  12020073 tggtttgagttaagggataaggagttggaggtcctgggttcaaacccaaatgaatgagtaaatattaatctaa 12020145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 336 - 443
Target Start/End: Complemental strand, 33085015 - 33084908
Alignment:
Q  336 gttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggctcaaacctggacgaataagtaaatactaatctaataactaactact 435  Q
    ||||||||||| || ||||||||| ||||||||| ||| |||||  ||||||| | |||||||||||||  || ||| |||||||||| |||||| ||||    
T  33085015 gttgggtagctcaactggtttgagctaagggatatggagttggaggtcctgggttaaaacctggacgaaggagaaaaaactaatctaacaactaattact 33084916  T
Q  436 aacatttg 443  Q
    ||||||||    
T  33084915 aacatttg 33084908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 446
Target Start/End: Original strand, 37829954 - 37830031
Alignment:
Q  369 aaggacttggatatcctgggctcaaacctggacgaataagtaaatactaatctaataactaactactaacatttgtca 446  Q
    ||||| |||||  ||||||  ||||||| |||||||  |||| ||| |||||||| |||||| |||||||||||||||    
T  37829954 aaggagttggaagtcctggcttcaaacccggacgaaggagtagatattaatctaacaactaattactaacatttgtca 37830031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 439
Target Start/End: Original strand, 30979823 - 30979925
Alignment:
Q  337 ttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggctcaaacctggacgaataagtaaatactaatctaataactaactacta 436  Q
    |||||||||| || ||||||||| ||||||||||||| |||||  || |||||||||||| |||||||  || ||| |||||||||| ||||||  ||||    
T  30979823 ttgggtagctcaactggtttgagctaagggataaggagttggaggtcttgggctcaaacccggacgaaggagaaaaaactaatctaacaactaatcacta 30979922  T
Q  437 aca 439  Q
    |||    
T  30979923 aca 30979925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 401
Target Start/End: Original strand, 8456805 - 8456869
Alignment:
Q  337 ttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggctcaaacctggac 401  Q
    |||||||||| || ||||||||| ||||||||||||| |||||| ||||||| ||||||| ||||    
T  8456805 ttgggtagctcaactggtttgagctaagggataaggagttggatgtcctgggttcaaacccggac 8456869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 442
Target Start/End: Original strand, 38020376 - 38020478
Alignment:
Q  340 ggtagcttaattggtttgagttaagggataaggacttggatatcctgggctcaaacctggacgaataagtaaatactaatctaataactaactactaaca 439  Q
    ||||||| || ||||||||| |||||| |||||| |||||  |||  || ||||||| |||||||  |||||||| |||||||| |||| | ||||||||    
T  38020376 ggtagctcaactggtttgagctaagggttaaggagttggaggtccaaggttcaaacccggacgaaggagtaaatattaatctaacaactgattactaaca 38020475  T
Q  440 ttt 442  Q
    |||    
T  38020476 ttt 38020478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 433
Target Start/End: Original strand, 2097083 - 2097180
Alignment:
Q  336 gttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggctcaaacctggacgaataagtaaatactaatctaataactaacta 433  Q
    ||||||||||| || | ||||||| |||||| |||||| |||||  ||||||| ||||||| |||| |   |||||||| |||||||| |||||||||    
T  2097083 gttgggtagctcaactagtttgagctaagggttaaggagttggaggtcctgggttcaaacccggacaagggagtaaatattaatctaacaactaacta 2097180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 4271843 - 4271807
Alignment:
Q  222 tgtcaagtattatgggacggagggagtatcaaataac 258  Q
    ||||||||||||||||||||||||||||| |||||||    
T  4271843 tgtcaagtattatgggacggagggagtattaaataac 4271807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 443
Target Start/End: Original strand, 6296852 - 6296958
Alignment:
Q  336 gttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggctcaaacctggacgaataagtaaatactaatctaataactaactact 435  Q
    ||||||||||| |||||||||||| ||||||||||||| |||||  | ||||| |||||||  ||| ||  || ||| |||||||||| |||||| ||||    
T  6296852 gttgggtagctcaattggtttgagctaagggataaggagttggaggttctgggttcaaacccagacaaaggag-aaaaactaatctaacaactaattact 6296950  T
Q  436 aacatttg 443  Q
    ||||||||    
T  6296951 aacatttg 6296958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 444
Target Start/End: Complemental strand, 29815023 - 29814916
Alignment:
Q  336 gttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggctcaaacctggacgaataagtaaatactaatctaataactaactact 435  Q
    ||||||||||| |||||||||||| ||||||||||||| |||||  |||| || ||||||||| || ||  || ||| |||||| ||| || ||| ||||    
T  29815023 gttgggtagctcaattggtttgagctaagggataaggagttggaggtcctaggttcaaacctgaacaaaggag-aaaaactaatgtaacaaataattact 29814925  T
Q  436 aacatttgt 444  Q
    |||||||||    
T  29814924 aacatttgt 29814916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 442
Target Start/End: Complemental strand, 10635407 - 10635301
Alignment:
Q  336 gttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggctcaaacctggacgaataagtaaatactaatctaataactaactact 435  Q
    ||||||||||| || ||||||||| ||||||||||||| |||||  ||||||  ||||||| || ||||  || ||| | | |||||| |||||| ||||    
T  10635407 gttgggtagctcaactggtttgagctaagggataaggagttggaggtcctggcttcaaacccgggcgaaggagaaaaaaatgatctaagaactaattact 10635308  T
Q  436 aacattt 442  Q
    |||||||    
T  10635307 aacattt 10635301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 446
Target Start/End: Complemental strand, 48308135 - 48308092
Alignment:
Q  403 aataagtaaatactaatctaataactaactactaacatttgtca 446  Q
    ||||| |||||| |||||||| ||||||||||||||||||||||    
T  48308135 aataattaaatattaatctaacaactaactactaacatttgtca 48308092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 442
Target Start/End: Original strand, 42529434 - 42529540
Alignment:
Q  336 gttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggctcaaacctggacgaataagtaaatactaatctaataactaactact 435  Q
    ||||||||||| |  ||||||||| ||||||||||||| |||||  || || | |||||| |  |||||  |||||||| |||||||| || | ||||||    
T  42529434 gttgggtagctcagctggtttgagctaagggataaggagttggaggtcatgagttcaaacttaaacgaaagagtaaatattaatctaacaattgactact 42529533  T
Q  436 aacattt 442  Q
    |||||||    
T  42529534 aacattt 42529540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 443
Target Start/End: Complemental strand, 54913706 - 54913673
Alignment:
Q  410 aaatactaatctaataactaactactaacatttg 443  Q
    |||||||||||||| |||||||||||||||||||    
T  54913706 aaatactaatctaacaactaactactaacatttg 54913673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 423
Target Start/End: Original strand, 26009789 - 26009876
Alignment:
Q  336 gttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggctcaaacctggacgaataagtaaatactaatctaa 423  Q
    ||||||||||| || |||||||||  ||||||||| || |||||  ||||||| ||||||| |||||||  || ||| ||||||||||    
T  26009789 gttgggtagctcaactggtttgagccaagggataaagagttggaggtcctgggttcaaacccggacgaaggagaaaaaactaatctaa 26009876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 443
Target Start/End: Original strand, 1652535 - 1652640
Alignment:
Q  337 ttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggctcaaacctggacgaataagtaaatactaatctaataactaactacta 436  Q
    |||||||||| || ||||||||| ||||||||||| | |||||  |||| || ||||||| ||| |||  || ||| |||||||||| |||||| ||| |    
T  1652535 ttgggtagctcaactggtttgagctaagggataagaaattggaggtcctaggttcaaacccggatgaaggag-aaaaactaatctaacaactaattacca 1652633  T
Q  437 acatttg 443  Q
    |||||||    
T  1652634 acatttg 1652640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3540 times since January 2019
Visitors: 4814