View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0726_high_6 (Length: 258)

Name: NF0726_high_6
Description: NF0726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0726_high_6
NF0726_high_6
[»] chr5 (1 HSPs)
chr5 (30-258)||(5038614-5038850)


Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 5038850 - 5038614
Alignment:
Q  30 ttgagtattgcaaaatgtgcgggggagagtattacaggacttcctttcttcattttaggagtttgaaatgatagaagagaacagttttctttatcatcac 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5038850 ttgagtattgcaaaatgtgcgggggagagtattacaggacttcctttcttcattttaggagtttgaaatgatagaagagaacagttttctttatcatcac 5038751  T
Q  130 ttcactcatcatagacttcttcaattcctttctcacatgaaatgaaaagaaaagaaaattgtt--------tcacaaagttggtatatgatcaaatcatt 221  Q
    || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||        |||||||| ||||||||||||||||||||    
T  5038750 tttactcatcatagacttcttgaattcctttctcacatgaaatgaaaagaaaagaaaattgtttgacaaagtcacaaagctggtatatgatcaaatcatt 5038651  T
Q  222 aatcattaattatgagatgtatgtatggttttaaatt 258  Q
    |||||||||||||||||||||||||||||||||||||    
T  5038650 aatcattaattatgagatgtatgtatggttttaaatt 5038614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University