View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0726_high_9 (Length: 251)
Name: NF0726_high_9
Description: NF0726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0726_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 60 - 241
Target Start/End: Original strand, 11098940 - 11099121
Alignment:
| Q |
60 |
actccttcaagaatgaaaaagagttgaatcagaagtttctcatagtacagaaaactagcatatgaaactaattgtttgttctatatttaaagatatttaa |
159 |
Q |
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| T |
11098940 |
actccttcaagaatgaaaaagagttgagtcagaagtttctcatagtacagaaaactagcatatgaaactaattgtttgttctatatttaaagatatttaa |
11099039 |
T |
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| Q |
160 |
acacagaattgatgttcatttgttttttgaagtgaagaaacgtaatattctactggagtgtttacaacatacttgccctatg |
241 |
Q |
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| T |
11099040 |
acacaaaattgatgctcatttgtttcttgaagtgaagaaacgtaatattctcctggagtgtttacaacatacttgccctatg |
11099121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 60 - 241
Target Start/End: Complemental strand, 17998389 - 17998208
Alignment:
| Q |
60 |
actccttcaagaatgaaaaagagttgaatcagaagtttctcatagtacagaaaactagcatatgaaactaattgtttgttctatatttaaagatatttaa |
159 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17998389 |
actccttcaagaatgaaaaagagttgagtcagaagtttctcatagtacagaaaactagcatatgaaactaattgtttgttctatatttaaagatatttaa |
17998290 |
T |
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| Q |
160 |
acacagaattgatgttcatttgttttttgaagtgaagaaacgtaatattctactggagtgtttacaacatacttgccctatg |
241 |
Q |
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||||| |||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17998289 |
acacaaaattgatgctcatttgtttcttgaagtgaagaaacgtaatattctcctggagtgtttacaacatacttgccctatg |
17998208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 173
Target Start/End: Complemental strand, 6560591 - 6560484
Alignment:
| Q |
68 |
aagaatgaaaaagagttgaatcagaagtttctcatagtacagaaaactagca-tatgaaactaattgtttgttctatat--ttaaagatatttaaacaca |
164 |
Q |
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|||||||||||||| |||||| ||||||||||||||||| ||||||||| || |||||||||||||||| |||||| ||||||| ||||||| | |
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| T |
6560591 |
aagaatgaaaaagacttgaatgt-aagtttctcatagtacaacaaactagcattacgaaactaattgtttgtactatatacaaaaagataattaaacaga |
6560493 |
T |
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| Q |
165 |
gaattgatg |
173 |
Q |
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||||||||| |
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| T |
6560492 |
gaattgatg |
6560484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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