View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0726_low_1 (Length: 556)
Name: NF0726_low_1
Description: NF0726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0726_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 4 - 548
Target Start/End: Complemental strand, 402290 - 401746
Alignment:
| Q |
4 |
tgtaggtccgcaattatcattcagtctaaaacataactagtaacaataagtcaatacaaaataaaaagtggatgagaaataatgatactgagacagaaaa |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
402290 |
tgtaggtccgcaattatcattcagtctaaaacataactagtaacaataagtcaatacaaaacaaaaagtggatgagaaataatgatactgagacagaaaa |
402191 |
T |
|
| Q |
104 |
tggagaggccaaactcagcaagaagctgcgcaaagcaggtttgagctgctggaaatttgatgaaactggggtgggctactgagatgaagcggatgcaaga |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
402190 |
tggagaggccaaactcagcaagaagctgcgcaaagcaggtttgagctgcgggaaatttgatgaaactggggtgggctactgagatgaagctgatgcaaga |
402091 |
T |
|
| Q |
204 |
tggggacttnnnnnnnnnnnnatggtgtgctgggaggctgctaacccaaacaattggtttctgtgtttgaagggtgttggaagaccnnnnnnnnctctct |
303 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
402090 |
tgggaactttgtgtgtgtgtgatggtgtgctgggaggctgctaacccaaacaattggtttctgtgtttgaagggtgttggaagaccaaaaaaaactctct |
401991 |
T |
|
| Q |
304 |
caattgcttgaagccggctggtttaactgggaataaaatcgagattgtatttatgagatgccagaataaatatttgctggttttcggagatttcattcaa |
403 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
401990 |
caattgcttgaagccggctggtttaactgtggataaaatcgagattgtatttatgagatgccagaataaatatttgctggttttcggagatttcattcaa |
401891 |
T |
|
| Q |
404 |
cgaaacattataggtctcaatcttcgaaccctttcaggtggaacaaacctctgaagtcttgccaatatagcgcctatggctatgggatgtggctgttgtg |
503 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
401890 |
cgaaacattataggtctcaatcttcgaaccctttcagatggaacaaacctctgaagtcttgccaatatagcgcctatggctatgggatgtggctgttgtg |
401791 |
T |
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| Q |
504 |
ctggaatgggagagggctgtgatgtcctatattcagtttcatatc |
548 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
401790 |
ctggaatgggagagggctgtgatgtcctatattcagtttcatatc |
401746 |
T |
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