View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0726_low_11 (Length: 318)
Name: NF0726_low_11
Description: NF0726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0726_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 1769383 - 1769693
Alignment:
| Q |
1 |
aatggtgaagttgttgctactgaatttttagcgtcggaagaagaagaatttgggacggttatcgatctgcgttggtggtgacgaggggggtgtggtattg |
100 |
Q |
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| T |
1769383 |
aatggtgaagttgttgctactgaatttttagcgtcggaagaagaagaatttgggacggttatcgatctgcgttggtggtgacgaggggggtgtggtattg |
1769482 |
T |
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| Q |
101 |
atagggagggtgtaaacccgattagggatgcggatattgcagacatgttttcgattc----------tatgttctgttctattgaatttatgttttgaat |
190 |
Q |
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| T |
1769483 |
atagggagggtgtaaacccgattagggatgcggatattgcagacatgttttcgattctatgctatgttatgttctgttctattgaatttatgttttgaat |
1769582 |
T |
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| Q |
191 |
atgatgatgatgatatttttacgtaactcgtggtggttgtttagtttgttattaattcagttatactttaacctcaatccttgtctatttattatcccta |
290 |
Q |
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| T |
1769583 |
acgatgatgatgatatttttacgtaactcgtggtggttgtttagtttgttattaattcagttatactttaaactcaatccttgtctatttattatcccta |
1769682 |
T |
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| Q |
291 |
tcccctccacg |
301 |
Q |
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| T |
1769683 |
tcccctccacg |
1769693 |
T |
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