View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0726_low_12 (Length: 299)

Name: NF0726_low_12
Description: NF0726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0726_low_12
NF0726_low_12
[»] chr3 (14 HSPs)
chr3 (59-299)||(33270310-33270550)
chr3 (205-291)||(4844495-4844581)
chr3 (205-291)||(4870191-4870277)
chr3 (203-286)||(14186659-14186741)
chr3 (61-148)||(39751605-39751692)
chr3 (203-286)||(11612310-11612393)
chr3 (203-286)||(12761523-12761606)
chr3 (203-254)||(44069801-44069852)
chr3 (205-286)||(5499391-5499472)
chr3 (227-296)||(17554772-17554841)
chr3 (205-254)||(27093345-27093394)
chr3 (205-286)||(47810728-47810809)
chr3 (205-286)||(53412956-53413037)
chr3 (217-277)||(37788461-37788521)
[»] chr5 (7 HSPs)
chr5 (59-148)||(25707148-25707237)
chr5 (203-290)||(16773814-16773901)
chr5 (202-291)||(14495786-14495875)
chr5 (205-291)||(29692370-29692456)
chr5 (205-286)||(16457821-16457902)
chr5 (227-291)||(892480-892544)
chr5 (205-285)||(18973977-18974052)
[»] chr2 (12 HSPs)
chr2 (68-127)||(34662111-34662170)
chr2 (203-277)||(11251107-11251181)
chr2 (203-287)||(12086111-12086195)
chr2 (231-290)||(12994386-12994445)
chr2 (203-286)||(21213780-21213863)
chr2 (205-286)||(19244120-19244201)
chr2 (213-286)||(37480086-37480159)
chr2 (205-286)||(42327379-42327460)
chr2 (205-286)||(42602565-42602646)
chr2 (205-286)||(34041572-34041653)
chr2 (205-286)||(40416374-40416455)
chr2 (227-279)||(39715010-39715062)
[»] chr7 (18 HSPs)
chr7 (205-286)||(22760874-22760955)
chr7 (217-286)||(43215195-43215264)
chr7 (212-282)||(18056766-18056836)
chr7 (205-286)||(26459394-26459475)
chr7 (203-254)||(2882993-2883044)
chr7 (205-280)||(5579218-5579293)
chr7 (227-285)||(7801192-7801250)
chr7 (216-290)||(14058260-14058334)
chr7 (216-290)||(14368288-14368362)
chr7 (205-283)||(33222384-33222462)
chr7 (205-291)||(47824584-47824670)
chr7 (205-286)||(15137564-15137645)
chr7 (217-286)||(17041008-17041077)
chr7 (229-286)||(23595740-23595797)
chr7 (205-286)||(25655212-25655293)
chr7 (202-286)||(4566409-4566493)
chr7 (203-279)||(21558146-21558222)
chr7 (218-286)||(23301599-23301667)
[»] chr8 (7 HSPs)
chr8 (203-290)||(968369-968456)
chr8 (203-277)||(6536540-6536614)
chr8 (203-280)||(23361631-23361708)
chr8 (203-266)||(28787478-28787541)
chr8 (205-286)||(2203503-2203584)
chr8 (214-286)||(3624591-3624663)
chr8 (205-273)||(33017238-33017306)
[»] chr1 (9 HSPs)
chr1 (204-286)||(19940855-19940937)
chr1 (205-290)||(34228881-34228965)
chr1 (205-286)||(37400285-37400366)
chr1 (205-266)||(51281382-51281443)
chr1 (203-281)||(12587286-12587363)
chr1 (213-286)||(19528319-19528392)
chr1 (205-286)||(51814505-51814586)
chr1 (203-290)||(952518-952605)
chr1 (205-286)||(31605832-31605913)
[»] scaffold0517 (1 HSPs)
scaffold0517 (205-286)||(7710-7791)
[»] chr6 (8 HSPs)
chr6 (202-286)||(12234488-12234572)
chr6 (203-286)||(33549115-33549198)
chr6 (212-278)||(6385881-6385947)
chr6 (205-286)||(31622975-31623056)
chr6 (227-286)||(34444814-34444873)
chr6 (205-286)||(14557973-14558053)
chr6 (227-279)||(10338180-10338232)
chr6 (202-254)||(28841457-28841509)
[»] chr4 (5 HSPs)
chr4 (203-275)||(7949436-7949508)
chr4 (205-286)||(5795393-5795474)
chr4 (205-286)||(37109335-37109416)
chr4 (205-254)||(4249220-4249269)
chr4 (205-286)||(46295108-46295189)
[»] scaffold0258 (1 HSPs)
scaffold0258 (203-286)||(15305-15388)
[»] scaffold0006 (1 HSPs)
scaffold0006 (202-291)||(162990-163079)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 59 - 299
Target Start/End: Original strand, 33270310 - 33270550
Alignment:
Q  59 agctgttgcagaccaatcatgatggctgcacctgccatgaatcctacaagtgcagcatgtgacaaaaaatccacaagaaatcccaacctgcagcagatta 158  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33270310 agctgctgcagaccaatcatgatggctgcacctgccatgaatcctacaagtgcagcatgtgacaaaaaatccacaagaaatcccaacctgcagcagatta 33270409  T
Q  159 aattaatcattcaatctatacatttaaaagaaaattaacagtttctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttaga 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33270410 aattaatcattcaatctatacatttaaaagaaaattaacagttttcaaattgccaccggagagaatgaaacctgagacctttaggtggaacacacttaga 33270509  T
Q  259 ggtcccaagtcaataccaccagaccaactcaaaatccacaa 299  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  33270510 ggtcccaagtcaataccaccagaccaacccaaaatccacaa 33270550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 291
Target Start/End: Original strand, 4844495 - 4844581
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaaa 291  Q
    |||||| |||||||||||||  | ||||||||||  ||| ||||||||||   || |||||||||||||||||||||||||| ||||    
T  4844495 aaattggcaccggagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaa 4844581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 291
Target Start/End: Original strand, 4870191 - 4870277
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaaa 291  Q
    |||||| |||||||||||||  | ||||||||||  ||| ||||||||||   || |||||||||||||||||||||||||| ||||    
T  4870191 aaattggcaccggagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaa 4870277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 14186741 - 14186659
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||||| |||||||||||||  ||||||||||||| ||| ||||||||| |  |||||||||| ||||||||| || |||||    
T  14186741 ctaaattgacaccggagagaatcgaacctgagaccttgaggaggagcacac-tccaggtcccaagacaataccactaggccaac 14186659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 39751692 - 39751605
Alignment:
Q  61 ctgttgcagaccaatcatgatggctgcacctgccatgaatcctacaagtgcagcatgtgacaaaaaatccacaagaaatcccaacctg 148  Q
    |||||| ||||||||||  ||||| || ||||| |  ||||| |||| |||||||||||||| |||||||||||| || |||||||||    
T  39751692 ctgttgaagaccaatcacaatggcagctcctgctacaaatccaacaattgcagcatgtgacagaaaatccacaaggaaccccaacctg 39751605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 11612393 - 11612310
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||||| |||||| ||| ||  ||||||||||||| ||| ||||||||||   || |||||||| ||||||||||| |||||    
T  11612393 ctaaattggcaccggggagcatcgaacctgagaccttaaggaggagcacactcccagctcccaagtgaataccaccaggccaac 11612310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 12761606 - 12761523
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||||| |||||| || |||  ||||||||| ||  ||| ||| ||||||   |||||||||||||||||||||||||||||    
T  12761606 ctaaattggcaccggggaaaatcgaacctgagagctcaaggaggaacacactcccaggtcccaagtcaataccaccagaccaac 12761523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 44069852 - 44069801
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacact 254  Q
    |||||||| ||||||| ||||| |||||||||||||| ||| ||||||||||    
T  44069852 ctaaattggcaccggaaagaatcaaacctgagaccttgaggaggagcacact 44069801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 5499391 - 5499472
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| |||||| ||||||  ||||| ||||||| ||| ||||||||||   || || ||||||||||||||||| |||||    
T  5499391 aaattggcaccggggagaatagaaccttagaccttaaggaggagcacactctcagatctcaagtcaataccaccaggccaac 5499472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 17554841 - 17554772
Alignment:
Q  227 aacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaaaatcca 296  Q
    |||||||| |||| |||  |||||||||   |||||||||| ||||||||||| |||||| |||||||||    
T  17554841 aacctgagcccttgaggaagagcacactcccaggtcccaagccaataccaccaaaccaacccaaaatcca 17554772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 27093345 - 27093394
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacact 254  Q
    |||||| |||| |||||||| |||||||||||||| ||| ||||||||||    
T  27093345 aaattggcaccagagagaatcaaacctgagaccttgaggaggagcacact 27093394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 47810728 - 47810809
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| ||||||||||||| ||||| ||||||||  || ||||||||||   | | || ||| ||||||||||||||||||    
T  47810728 aaattggcaccggagagaatcaaacccgagaccttgcggaggagcacactcccaagaccaaagccaataccaccagaccaac 47810809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 53413037 - 53412956
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| |||| ||||||||  ||||||||||||| ||| ||||||||||   ||||  |||| ||||||||| ||||||||    
T  53413037 aaattggcaccagagagaattgaacctgagaccttgaggaggagcacactcccaggttacaagccaataccactagaccaac 53412956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 37788461 - 37788521
Alignment:
Q  217 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccac 277  Q
    ||||||||  ||||||||||||| ||| ||||||||||   |||| |||||||||||||||    
T  37788461 gagagaatcgaacctgagaccttgaggaggagcacactcctaggttccaagtcaataccac 37788521  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 25707148 - 25707237
Alignment:
Q  59 agctgttgcagaccaatcatgatggctgcacctgccatgaatcctacaagtgcagcatgtgacaaaaaatccacaagaaatcccaacctg 148  Q
    ||||| || |||||||| ||||| ||||| |||||||||||||| || |||||||||||||| | ||||||||||||||| |||||||||    
T  25707148 agctgctgaagaccaataatgattgctgctcctgccatgaatccaactagtgcagcatgtgaaagaaaatccacaagaaaacccaacctg 25707237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 16773901 - 16773814
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaa 290  Q
    |||||||| || | ||||||||  ||||||||||||  ||| ||||||||||   |||||||||||||||||||||||||||||||||    
T  16773901 ctaaattggcatcagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccagaccaactcaa 16773814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 14495786 - 14495875
Alignment:
Q  202 tctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaaa 291  Q
    ||||||||| || |||||||||| ||| |||||||||  ||| ||||||||||   || |||||||||||||||||||||||||| ||||    
T  14495786 tctaaattggcatcggagagaatcaaatctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaa 14495875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 291
Target Start/End: Original strand, 29692370 - 29692456
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaaa 291  Q
    |||||| || |||||||||| ||||||||||| || ||| ||||||||||   || ||||||  |||||||||||||||||| ||||    
T  29692370 aaattggcatcggagagaattaaacctgagactttgaggaggagcacactcccagatcccaatccaataccaccagaccaacccaaa 29692456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 16457902 - 16457821
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| |||||| ||||||  ||| ||||||||| ||| ||||||||||   |||||||||| |||||||||||| |||||    
T  16457902 aaattggcaccggggagaattgaacatgagaccttgaggaggagcacactccaaggtcccaagccaataccaccaggccaac 16457821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 892480 - 892544
Alignment:
Q  227 aacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaaa 291  Q
    ||||||||||||| ||| |||| |||||  ||||||||||| ||||||||| || ||||| ||||    
T  892480 aacctgagaccttgaggaggagtacactctgaggtcccaagccaataccactaggccaacccaaa 892544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 285
Target Start/End: Complemental strand, 18974052 - 18973977
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaa 285  Q
    |||||| |||| | ||||||  ||||||| ||||| ||| ||||||||     ||||||||||||||||||||||||||||    
T  18974052 aaattggcaccagggagaatcgaacctgacaccttgaggaggagcaca-----aggtcccaagtcaataccaccagaccaa 18973977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 34662111 - 34662170
Alignment:
Q  68 agaccaatcatgatggctgcacctgccatgaatcctacaagtgcagcatgtgacaaaaaa 127  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  34662111 agaccaatcaagatggctgcacctgccataaatcctacaagtgcagcatgtgataaaaaa 34662170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 11251181 - 11251107
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccac 277  Q
    |||||||| |||| |||||||| |||||||||||||| ||| |||||||||||  | |||||||| |||||||||    
T  11251181 ctaaattgacaccagagagaatcaaacctgagaccttgaggaggagcacacttccaagtcccaagccaataccac 11251107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 287
Target Start/End: Original strand, 12086111 - 12086195
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaact 287  Q
    |||||||  |||||||| ||||  |||| |||||||| ||| |||||||||||  |||||||||| |||||||||||| ||||||    
T  12086111 ctaaattagcaccggagggaatcgaacccgagaccttgaggaggagcacacttccaggtcccaagccaataccaccaggccaact 12086195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 12994386 - 12994445
Alignment:
Q  231 tgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaa 290  Q
    ||||||||| ||| ||||||||||   |||||||||||||||||||| ||||||||||||    
T  12994386 tgagaccttaaggaggagcacactcccaggtcccaagtcaataccactagaccaactcaa 12994445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 21213863 - 21213780
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||||| |||||| ||||||  ||||||||||||  ||| ||| ||||||   |||||||||| ||||||||||||||||||    
T  21213863 ctaaattggcaccggggagaatcgaacctgagacctcaaggaggaacacactcccaggtcccaagccaataccaccagaccaac 21213780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 19244201 - 19244120
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| |||| ||||||||  |||||||||||||  || ||||||||||   |||||||||||||||||||  ||||||||    
T  19244201 aaattggcaccagagagaatcgaacctgagaccttggggaggagcacactctcaggtcccaagtcaataccagtagaccaac 19244120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 37480159 - 37480086
Alignment:
Q  213 accggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    ||||| ||||||  ||||||||||||| ||| ||||||||||   |||||||||| |||||||||||| |||||    
T  37480159 accggggagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccaccaggccaac 37480086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 42327379 - 42327460
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| ||||| |||||||  ||||||||||||| ||| ||||||||||   |||||||||| ||||||||| || |||||    
T  42327379 aaattggcaccgaagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaac 42327460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 42602646 - 42602565
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| ||||||||||||| |||||| ||||||| ||  ||||||||||   |||||||||| ||||||||| || |||||    
T  42602646 aaattggcaccggagagaatcaaacctaagaccttgagaaggagcacactcccaggtcccaagccaataccactaggccaac 42602565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 34041572 - 34041653
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| |||| ||| |||| |||||||||||||| ||| ||||||||||   || ||| ||||||||||||| || |||||    
T  34041572 aaattggcaccagagggaatcaaacctgagaccttgaggaggagcacactctcagatcctaagtcaataccactaggccaac 34041653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 40416374 - 40416455
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| |||| ||||||||  ||||||||||||| ||| |||||| |||   |||| ||||||||||||||| || |||||    
T  40416374 aaattggcaccagagagaatcgaacctgagaccttaaggaggagcatactcccaggttccaagtcaataccactaggccaac 40416455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 39715062 - 39715010
Alignment:
Q  227 aacctgagacctttaggtggagcacacttagaggtcccaagtcaataccacca 279  Q
    ||||||||||||  ||| ||||||||||   ||||||||||||||||||||||    
T  39715062 aacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccacca 39715010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 22760955 - 22760874
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| || ||| ||||||  ||||||||||||| ||| ||||||||||   |||||||||||||||||||||||||||||    
T  22760955 aaattggcatcggggagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaac 22760874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 43215264 - 43215195
Alignment:
Q  217 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    ||||||||  ||||||||||||| ||| ||||||||||  ||||||||||| ||||||||| ||||||||    
T  43215264 gagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccactagaccaac 43215195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 282
Target Start/End: Original strand, 18056766 - 18056836
Alignment:
Q  212 caccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagac 282  Q
    |||||| ||||||  ||||||||||||| ||| ||||||||||  || | |||||||||||||||||||||    
T  18056766 caccggggagaatcgaacctgagaccttcaggaggagcacactccgaagacccaagtcaataccaccagac 18056836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 26459394 - 26459475
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| |||| ||||||||  ||||||||||||| ||| ||||||||||   |||||||||| ||||||||| || |||||    
T  26459394 aaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaac 26459475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 2883044 - 2882993
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacact 254  Q
    ||||||||||||| ||||||||  ||||||||||||| ||| ||||||||||    
T  2883044 ctaaattgccaccagagagaattgaacctgagaccttgaggaggagcacact 2882993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 5579218 - 5579293
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccag 280  Q
    |||||| |||||| |||| | |||||||||||||| ||| ||||||||||   |||||||||| ||| ||||||||    
T  5579218 aaattggcaccggggagagtcaaacctgagaccttgaggaggagcacactccaaggtcccaagccaacaccaccag 5579293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 7801250 - 7801192
Alignment:
Q  227 aacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaa 285  Q
    ||||||||||||| | | ||||||||||   ||||||||||||||||||||||| ||||    
T  7801250 aacctgagaccttgaagaggagcacactcccaggtcccaagtcaataccaccaggccaa 7801192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 14058334 - 14058260
Alignment:
Q  216 ggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaa 290  Q
    |||||||||  ||||||||||||| |||  |||||||||   |||| ||||| |||||||||||| |||||||||    
T  14058334 ggagagaatcgaacctgagaccttgaggatgagcacactctcaggttccaagacaataccaccaggccaactcaa 14058260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 14368362 - 14368288
Alignment:
Q  216 ggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaa 290  Q
    |||||||||  ||||||||||||| |||  |||||||||   |||| ||||| |||||||||||| |||||||||    
T  14368362 ggagagaatcgaacctgagaccttgaggatgagcacactctcaggttccaagacaataccaccaggccaactcaa 14368288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 33222462 - 33222384
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagacc 283  Q
    |||||| |||| ||||||||  ||||||||||||| |||  ||| ||||||  |||||||||| ||||||||| |||||    
T  33222462 aaattgacaccagagagaatcgaacctgagaccttgaggatgagtacacttccaggtcccaagccaataccactagacc 33222384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 291
Target Start/End: Original strand, 47824584 - 47824670
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaaa 291  Q
    |||||| ||||||||| |||  ||| |||||| || ||| |||||||||||   |||| ||||||||||||||||  ||||||||||    
T  47824584 aaattgacaccggagacaatcgaacatgagactttgaggaggagcacacttcatggtctcaagtcaataccaccacgccaactcaaa 47824670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 15137645 - 15137564
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| |||| ||||||||  ||||||||||||| ||| ||||||||||   |  |||||||||| ||||||||| |||||    
T  15137645 aaattgacaccagagagaatctaacctgagaccttgaggaggagcacactcctaaatcccaagtcagtaccaccaggccaac 15137564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 17041008 - 17041077
Alignment:
Q  217 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    ||||||||  ||||||||||||| ||| |||||||||||  || ||||||| |||| |||| ||||||||    
T  17041008 gagagaatcgaacctgagaccttgaggaggagcacacttccagatcccaagccaatgccactagaccaac 17041077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 23595797 - 23595740
Alignment:
Q  229 cctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    ||||| ||||| ||| ||||||||||  ||| || |||||||||||||||||||||||    
T  23595797 cctgataccttgaggaggagcacactccgagatctcaagtcaataccaccagaccaac 23595740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 25655212 - 25655293
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| |||| ||||||||  ||||||| ||||| ||| ||| |||||| | || ||||||||||||||||| | ||||||    
T  25655212 aaattggcaccagagagaatcgaacctgaaaccttgaggaggatcacactcacagatcccaagtcaataccactaaaccaac 25655293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 4566409 - 4566493
Alignment:
Q  202 tctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    ||||||||| |||| |||||||| |||||||||||||| ||  |||  |||||   |||||| ||||||||||||| || |||||    
T  4566409 tctaaattggcaccagagagaatcaaacctgagaccttgagaaggaatacactccaaggtccgaagtcaataccactaggccaac 4566493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 279
Target Start/End: Complemental strand, 21558222 - 21558146
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccacca 279  Q
    |||||||| |||| ||||||||  ||||||||||||| ||| |||||||| |   |||| |||||||||||| ||||    
T  21558222 ctaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacattcttaggttccaagtcaatactacca 21558146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 23301599 - 23301667
Alignment:
Q  218 agagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    ||||||| |||| ||||||||  ||| ||||||||||   | ||||||||||||||||||||| |||||    
T  23301599 agagaatcaaacttgagacctcaaggaggagcacactcccaagtcccaagtcaataccaccaggccaac 23301667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 968456 - 968369
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaa 290  Q
    |||||||| || ||||||||||  ||||||||||||  ||| ||||||||||   |||||||||| |||||||||||| |||||||||    
T  968456 ctaaattggcatcggagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccaggccaactcaa 968369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 6536614 - 6536540
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccac 277  Q
    |||||||| |||| ||||||||  ||||||||||||| ||| ||||||||||   |||||||||| |||||||||    
T  6536614 ctaaattggcaccagagagaattgaacctgagaccttgaggaggagcacactcctaggtcccaagccaataccac 6536540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 23361631 - 23361708
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccag 280  Q
    |||||||| |||| ||||||||  ||||||||||||| ||| ||||||||||   |  ||||||||||||||||||||    
T  23361631 ctaaattgacaccagagagaattgaacctgagaccttgaggaggagcacactcccatatcccaagtcaataccaccag 23361708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 28787478 - 28787541
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaa 266  Q
    |||||||| ||| || |||||| |||||||||||||| ||| |||||||||||  |||||||||    
T  28787478 ctaaattggcactggggagaatcaaacctgagaccttgaggaggagcacacttgaaggtcccaa 28787541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 2203584 - 2203503
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| |||||| ||||||  | ||||||||||| ||| ||||||||||   |||||||||| ||||||||| || |||||    
T  2203584 aaattggcaccggggagaattgaccctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaac 2203503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 3624663 - 3624591
Alignment:
Q  214 ccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||||||||  ||||||||||||| | | ||||||||||   |||||||||| ||||||||| || |||||    
T  3624663 ccggagagaatcgaacctgagaccttgaagaggagcacactcccaggtcccaagccaataccactaggccaac 3624591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 273
Target Start/End: Complemental strand, 33017306 - 33017238
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaata 273  Q
    |||||| |||| ||||||||  ||||||||||||| ||| |||||||||||  |||| ||||| |||||    
T  33017306 aaattggcaccagagagaatcgaacctgagaccttgaggaggagcacacttccaggttccaagccaata 33017238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 286
Target Start/End: Original strand, 19940855 - 19940937
Alignment:
Q  204 taaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    ||||||| ||||||||||||| |||||||||||||| ||| ||||||||||   ||| ||||||  || ||||||||||||||    
T  19940855 taaattggcaccggagagaatcaaacctgagaccttaaggaggagcacactccaaggacccaagctaacaccaccagaccaac 19940937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 290
Target Start/End: Complemental strand, 34228965 - 34228881
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaa 290  Q
    |||||| |||||||||||||  ||||||||||||| ||  ||| ||||||  ||||||||||| ||| ||||||||||||||||||    
T  34228965 aaattggcaccggagagaatccaacctgagaccttgaga-ggaacacactccgaggtcccaagccaacaccaccagaccaactcaa 34228881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 37400366 - 37400285
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| ||||||| |||||  ||| ||||||||| ||| |||||||||||  ||||| |||| ||||||||||||||||||    
T  37400366 aaattggcaccggatagaatcgaacttgagaccttaaggaggagcacactttcaggtctcaagccaataccaccagaccaac 37400285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 51281443 - 51281382
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaa 266  Q
    |||||| | ||||||||||| |||||||||||||| ||| ||||||||||| ||||||||||    
T  51281443 aaattggcgccggagagaatcaaacctgagaccttgaggaggagcacactttgaggtcccaa 51281382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 12587363 - 12587286
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccaga 281  Q
    ||||||||| ||||||||||||  ||||||||||||  ||| |||||||||| | || ||||||||||||| |||||||    
T  12587363 ctaaattgc-accggagagaatcgaacctgagacctcgaggaggagcacactcacagatcccaagtcaatatcaccaga 12587286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 19528319 - 19528392
Alignment:
Q  213 accggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    ||||| ||||||  ||||||||||||| ||| |||||||||| | || ||||||| |||||||||||| |||||    
T  19528319 accggggagaatcgaacctgagaccttgaggaggagcacactcatagatcccaagccaataccaccaggccaac 19528392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 51814586 - 51814505
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| |||||||||||||  ||||||||||||| ||| ||||||||||   || || ||||||||||||| ||| |||||    
T  51814586 aaattggcaccggagagaatcgaacctgagaccttgaggaggagcacactctcagatctcaagtcaataccatcaggccaac 51814505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 952605 - 952518
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaa 290  Q
    |||||||| || ||| ||||||  |||||||||| || |||  |||||||||   |||||||||| ||| ||||||||||||||||||    
T  952605 ctaaattgacatcggggagaatctaacctgagactttgaggatgagcacactcccaggtcccaagccaacaccaccagaccaactcaa 952518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 31605832 - 31605913
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| |||||| ||||||  ||| ||||||||| ||| |||||||||||  |||||||||| ||| |||| ||| |||||    
T  31605832 aaattggcaccggggagaatcgaacttgagaccttgaggaggagcacacttcaaggtcccaagccaacaccatcaggccaac 31605913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 7710 - 7791
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| ||||||| |||||  ||| ||||||||| ||| |||||||||||  ||||| |||| ||||||||||||||||||    
T  7710 aaattggcaccggatagaatcgaacttgagaccttaaggaggagcacactttcaggtctcaagccaataccaccagaccaac 7791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 12234488 - 12234572
Alignment:
Q  202 tctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    ||||||||| ||| |||||||||  ||||||||||||  ||  ||||||||||   ||||||||||||||||||||||| |||||    
T  12234488 tctaaattgacactggagagaatcgaacctgagacctcgagagggagcacactcccaggtcccaagtcaataccaccaggccaac 12234572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 33549198 - 33549115
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||||| || | ||||||||  ||||||||||||  ||| ||||||||||   |||||||||| ||||||||||||||||||    
T  33549198 ctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaac 33549115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 6385947 - 6385881
Alignment:
Q  212 caccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccacc 278  Q
    |||||||||||||  ||||||||||||| ||| |||||||| |   |||||||||||||||||||||    
T  6385947 caccggagagaatcgaacctgagaccttaaggaggagcacagtcccaggtcccaagtcaataccacc 6385881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 31622975 - 31623056
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| |||||||| || | |||||||||||||  ||| ||||||||||   |||||||||| |||||||||| |||||||    
T  31622975 aaattgacaccggagtgattcaaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccggaccaac 31623056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 34444873 - 34444814
Alignment:
Q  227 aacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||||||||||  || ||||||||||   ||||||||||||||||||||||| |||||    
T  34444873 aacctgagaccttggggaggagcacactctaaggtcccaagtcaataccaccaggccaac 34444814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 14558053 - 14557973
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| |||||| ||||||  |||||||||||   ||| |||||||||||  |||||||||| ||| ||||||||||||||    
T  14558053 aaattgacaccgg-gagaatcgaacctgagacccggaggaggagcacacttccaggtcccaagccaacaccaccagaccaac 14557973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 10338180 - 10338232
Alignment:
Q  227 aacctgagacctttaggtggagcacacttagaggtcccaagtcaataccacca 279  Q
    ||||||||||||| ||| ||||||||||   |||||||||| |||||||||||    
T  10338180 aacctgagaccttgaggaggagcacactcctaggtcccaagccaataccacca 10338232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 28841509 - 28841457
Alignment:
Q  202 tctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacact 254  Q
    ||||||||| |||||||||||||  ||| ||||||||| ||| ||||||||||    
T  28841509 tctaaattgacaccggagagaatcgaacttgagaccttgaggaggagcacact 28841457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 7949436 - 7949508
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaatacc 275  Q
    |||||||| |||| ||||||||  ||||||||||||| ||| ||||||||||  ||||||||||| |||||||    
T  7949436 ctaaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaatacc 7949508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 5795393 - 5795474
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| ||| || |||||| |||||||||||||| ||| |||||| |||   |||| ||||||||| ||||||||||||||    
T  5795393 aaattggcactggggagaatcaaacctgagaccttgaggaggagcatactccaaggtgccaagtcaacaccaccagaccaac 5795474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 37109335 - 37109416
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| |||| ||||||||  ||||||||||||| ||| ||||||||||   |||||||||| ||||||||| || |||||    
T  37109335 aaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaac 37109416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 4249269 - 4249220
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacact 254  Q
    |||||| |||| |||||||| |||||||||||||| ||| ||||||||||    
T  4249269 aaattggcaccagagagaatcaaacctgagaccttgaggaggagcacact 4249220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 46295189 - 46295108
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||| |||||| ||||||  ||||||||||||| ||| ||||||||||   | |||||||| ||| || |||||||||||    
T  46295189 aaattggcaccggggagaatcgaacctgagaccttgaggaggagcacactccaatgtcccaagccaacactaccagaccaac 46295108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 15305 - 15388
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 286  Q
    |||||||| || | ||||||||  ||||||||||||  ||| ||||||||||   |||||||||| ||||||||||||||||||    
T  15305 ctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaac 15388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 162990 - 163079
Alignment:
Q  202 tctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaaa 291  Q
    ||||||||| |||||||||||||  ||||| |||||||  || ||||||||||   |||||  ||||||| ||||| |||||||| ||||    
T  162990 tctaaattgacaccggagagaatcgaacctcagaccttatggaggagcacactctcaggtcataagtcaaaaccactagaccaacccaaa 163079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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