View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0726_low_17 (Length: 258)
Name: NF0726_low_17
Description: NF0726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0726_low_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 5038850 - 5038614
Alignment:
| Q |
30 |
ttgagtattgcaaaatgtgcgggggagagtattacaggacttcctttcttcattttaggagtttgaaatgatagaagagaacagttttctttatcatcac |
129 |
Q |
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| T |
5038850 |
ttgagtattgcaaaatgtgcgggggagagtattacaggacttcctttcttcattttaggagtttgaaatgatagaagagaacagttttctttatcatcac |
5038751 |
T |
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| Q |
130 |
ttcactcatcatagacttcttcaattcctttctcacatgaaatgaaaagaaaagaaaattgtt--------tcacaaagttggtatatgatcaaatcatt |
221 |
Q |
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| T |
5038750 |
tttactcatcatagacttcttgaattcctttctcacatgaaatgaaaagaaaagaaaattgtttgacaaagtcacaaagctggtatatgatcaaatcatt |
5038651 |
T |
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| Q |
222 |
aatcattaattatgagatgtatgtatggttttaaatt |
258 |
Q |
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| T |
5038650 |
aatcattaattatgagatgtatgtatggttttaaatt |
5038614 |
T |
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