View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0726_low_2 (Length: 466)
Name: NF0726_low_2
Description: NF0726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0726_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 28 - 326
Target Start/End: Complemental strand, 35901102 - 35900799
Alignment:
| Q |
28 |
caaaaggtaccacaacatatagccttaaatcatgaaagttacctctttgagcaatagattcatcaaaccatttcattgtcacaatattaatatggcccca |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
35901102 |
caaaaggtaccacaacatatagccttaaatcatgaaagttacctctttgagcaatagattcatcaaaccatttcactgtcacaatattaatatggctcca |
35901003 |
T |
|
| Q |
128 |
atcttttgcctgtcaccttcgggagcgtaagaacagtcaagaacacaaa-----tattcaccacattcaaacctcaataacagatctttgaattgaaata |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35901002 |
atcttttgcctgtcaccttcgggagcgtaagaacagtcaagaacacaaatacagtattcaccacattcaaacctcaataacagatctttgaattgaaata |
35900903 |
T |
|
| Q |
223 |
ctgaattattcagacaaagaggatcagacgcacnnnnnnntaagaacaaaatgttcatactttttcactgatcccaacaatttgggatataaaccaagca |
322 |
Q |
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||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35900902 |
ctgaattattcagtcaaagaggatcagacgcacaaaaaaataagaacaaaatgttcatactttttcactgatcccaacaatttgggatataaaccaagca |
35900803 |
T |
|
| Q |
323 |
aaaa |
326 |
Q |
| |
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|||| |
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| T |
35900802 |
aaaa |
35900799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 28 - 294
Target Start/End: Complemental strand, 35884892 - 35884617
Alignment:
| Q |
28 |
caaaaggtaccacaacatatagccttaaatcatgaaagttacctctttgagcaatagattcatcaaaccatttcattgtcacaatattaatatggcccca |
127 |
Q |
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||||||||||||||||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35884892 |
caaaaggtaccacaacatacagcattaaagcatgagagttacctctttgagcaatagattcatcaaaccatttcattgtcacaatattaatatgtcccca |
35884793 |
T |
|
| Q |
128 |
atcttttgcc----------tgtcaccttcgggagcgtaagaacagtcaagaacacaaatattcaccacattcaaacctcaataacagatctttgaattg |
217 |
Q |
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| ||||||| | |||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| |
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| T |
35884792 |
aagttttgccatcttatgcttatcaccttcaggagcgtaagaacagtcaagaacacaaatatttaccacgttcaaacctcaataacaaatctttgaattg |
35884693 |
T |
|
| Q |
218 |
aaatactgaattattcagacaaagaggatcagacgcacnnnnnnntaagaacaaaatgttcatactttttcactgat |
294 |
Q |
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||||||| |||||||||| || |||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
35884692 |
aaatacttaattattcagtcagagaggatcagacgcac-agaaaataagaacaaaacattcatactttttcactgat |
35884617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 35900734 - 35900694
Alignment:
| Q |
378 |
attttgctacttgtactgcattatttaccaccacctatgat |
418 |
Q |
| |
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||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
35900734 |
attttgccacttgtactgcattatttaccaccacttatgat |
35900694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 10209537 - 10209646
Alignment:
| Q |
28 |
caaaaggtaccacaacatatagccttaaatcatgaaagttacctctttgagcaatagattcatcaaaccatttcattgtcacaatattaatatggcccca |
127 |
Q |
| |
|
||||||||||||||||||| ||| |||| ||| ||||||||||||| |||||| ||||| |||||||||||||||||| ||||||| ||| |||||||| |
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| T |
10209537 |
caaaaggtaccacaacatacagcactaaagcataaaagttacctcttcgagcaacagattgatcaaaccatttcattgtgacaatatgaatgtggcccca |
10209636 |
T |
|
| Q |
128 |
atcttttgcc |
137 |
Q |
| |
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| ||||||| |
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|
| T |
10209637 |
acgttttgcc |
10209646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 10209712 - 10209763
Alignment:
| Q |
204 |
agatctttgaattgaaatactgaattattcagacaaagaggatcagacgcac |
255 |
Q |
| |
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|||||||||||||||||||||||||||||||| || ||||||||||| |||| |
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|
| T |
10209712 |
agatctttgaattgaaatactgaattattcagtcagagaggatcagatgcac |
10209763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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