View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0726_low_21 (Length: 251)

Name: NF0726_low_21
Description: NF0726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0726_low_21
NF0726_low_21
[»] chr8 (9 HSPs)
chr8 (47-251)||(5921120-5921324)
chr8 (47-220)||(5949043-5949216)
chr8 (47-220)||(5960308-5960481)
chr8 (47-220)||(5984571-5984744)
chr8 (50-219)||(5887180-5887349)
chr8 (57-219)||(5843041-5843203)
chr8 (57-219)||(5849783-5849945)
chr8 (81-134)||(41351226-41351279)
chr8 (83-157)||(39916636-39916710)
[»] chr2 (2 HSPs)
chr2 (78-211)||(42788930-42789063)
chr2 (78-114)||(27172818-27172854)
[»] chr3 (2 HSPs)
chr3 (79-139)||(34626700-34626760)
chr3 (83-134)||(44674038-44674089)
[»] chr7 (1 HSPs)
chr7 (74-139)||(45676080-45676145)
[»] chr4 (2 HSPs)
chr4 (81-136)||(43560551-43560606)
chr4 (79-121)||(24359829-24359871)
[»] chr1 (4 HSPs)
chr1 (83-134)||(16127411-16127462)
chr1 (79-139)||(51044466-51044526)
chr1 (83-134)||(16138921-16138972)
chr1 (74-140)||(37962858-37962924)
[»] chr5 (3 HSPs)
chr5 (84-134)||(1281333-1281383)
chr5 (84-134)||(1319335-1319385)
chr5 (81-134)||(2590843-2590896)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 47 - 251
Target Start/End: Complemental strand, 5921324 - 5921120
Alignment:
Q  47 ttttcatttatatatcatgatgtgtgtaggtctgcaaagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtgga 146  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5921324 ttttcatttgtatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtgga 5921225  T
Q  147 agtttctctcatcaagaagctgcactcattctagaactccacagcattctaggcaataggtatattcattacatagctattatttttctctttttccctc 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5921224 agtttctctcatcaagaagctgcactcattctagaactccacagcattctaggcaataggtatattcattacatagctattatttttctctttttccttc 5921125  T
Q  247 cattt 251  Q
    |||||    
T  5921124 cattt 5921120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 47 - 220
Target Start/End: Complemental strand, 5949216 - 5949043
Alignment:
Q  47 ttttcatttatatatcatgatgtgtgtaggtctgcaaagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtgga 146  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5949216 ttttcatttgtatatcatgatatgtgtaggtctgcagagatgtggaaagagttgaagattaagatggataaattatctaagacctgatttgaaacgtgga 5949117  T
Q  147 agtttctctcatcaagaagctgcactcattctagaactccacagcattctaggcaataggtatattcattacat 220  Q
    |||||||||||||||||||  ||||||||| ||||||| |||| ||||||||||||||||||||||||||||||    
T  5949116 agtttctctcatcaagaagtagcactcattgtagaactacacaacattctaggcaataggtatattcattacat 5949043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 47 - 220
Target Start/End: Complemental strand, 5960481 - 5960308
Alignment:
Q  47 ttttcatttatatatcatgatgtgtgtaggtctgcaaagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtgga 146  Q
    ||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5960481 ttttcatttgtatatcatgatgtgtgtaggtctggagagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtgga 5960382  T
Q  147 agtttctctcatcaagaagctgcactcattctagaactccacagcattctaggcaataggtatattcattacat 220  Q
    ||||||||||| |||||||  ||||||||| |||||||||||| |||| |||||||||||||||||||||||||    
T  5960381 agtttctctcaacaagaagtagcactcattgtagaactccacaacattttaggcaataggtatattcattacat 5960308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 47 - 220
Target Start/End: Complemental strand, 5984744 - 5984571
Alignment:
Q  47 ttttcatttatatatcatgatgtgtgtaggtctgcaaagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtgga 146  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5984744 ttttcatttgtatatcatgatatgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtgga 5984645  T
Q  147 agtttctctcatcaagaagctgcactcattctagaactccacagcattctaggcaataggtatattcattacat 220  Q
    |||||||||||||||||||  ||||||||| ||||||| |||| ||||||||||||||||||||||||||||||    
T  5984644 agtttctctcatcaagaagtagcactcattgtagaactacacaacattctaggcaataggtatattcattacat 5984571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 50 - 219
Target Start/End: Complemental strand, 5887349 - 5887180
Alignment:
Q  50 tcatttatatatcatgatgtgtgtaggtctgcaaagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagt 149  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5887349 tcatttatatatcatgatgtgtgtaggtctgcagagatgcggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagt 5887250  T
Q  150 ttctctcatcaagaagctgcactcattctagaactccacagcattctaggcaataggtatattcattaca 219  Q
    ||||||||||||||||  ||||||||| ||||||| |||| ||||||||||||||||||||| |||||||    
T  5887249 ttctctcatcaagaagtagcactcattgtagaactacacaacattctaggcaataggtatatccattaca 5887180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 57 - 219
Target Start/End: Complemental strand, 5843203 - 5843041
Alignment:
Q  57 tatatcatgatgtgtgtaggtctgcaaagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctc 156  Q
    ||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  5843203 tatatcatgatgtgtctaggtctgcagagatgtggaaaaagttgtagattaagatggataaattatctaagacctgatttaaaacgtggaagtttctctt 5843104  T
Q  157 atcaagaagctgcactcattctagaactccacagcattctaggcaataggtatattcattaca 219  Q
    || ||||||  ||| ||||| ||||||| |||||||||||||||||||||||||| |||||||    
T  5843103 atgaagaagtagcaatcattatagaactacacagcattctaggcaataggtatatccattaca 5843041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 57 - 219
Target Start/End: Complemental strand, 5849945 - 5849783
Alignment:
Q  57 tatatcatgatgtgtgtaggtctgcaaagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctc 156  Q
    ||||||||||| ||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5849945 tatatcatgatatgtctaggtctgcagagatgtggaaaaagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctt 5849846  T
Q  157 atcaagaagctgcactcattctagaactccacagcattctaggcaataggtatattcattaca 219  Q
    || ||||||  ||| ||||| ||||||| |||||||||||||||||||||||||| |||||||    
T  5849845 atgaagaagtagcaatcattatagaactacacagcattctaggcaataggtatatccattaca 5849783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 41351279 - 41351226
Alignment:
Q  81 caaagatgtggaaagagttgtagattaagatggataaattatctaagacctgat 134  Q
    ||||| ||||| ||||||||| |||||||||||||||||||| | |||||||||    
T  41351279 caaaggtgtggtaagagttgtcgattaagatggataaattatttgagacctgat 41351226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 39916636 - 39916710
Alignment:
Q  83 aagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctca 157  Q
    |||||||||||| || || ||||| |||||||| |||||||| ||||||||| | || ||||||| |||| ||||    
T  39916636 aagatgtggaaaaagctgcagattgagatggatcaattatctcagacctgatcttaagcgtggaaatttcactca 39916710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 42789063 - 42788930
Alignment:
Q  78 ctgcaaagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagctgcactcattc 177  Q
    ||||| ||||||||||| ||||| || || ||||||||||||||| |||||||||||||||||||||||||||| ||||  ||||||||||| || |||     
T  42789063 ctgcagagatgtggaaaaagttgcaggttgagatggataaattatttaagacctgatttgaaacgtggaagtttttctccacaagaagctgctcttatta 42788964  T
Q  178 tagaactccacagcattctaggcaataggtatat 211  Q
    | ||||| || | ||||||||| || ||||||||    
T  42788963 ttgaacttcataccattctaggaaacaggtatat 42788930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 27172854 - 27172818
Alignment:
Q  78 ctgcaaagatgtggaaagagttgtagattaagatgga 114  Q
    ||||||||||||||||||||||| |||||||||||||    
T  27172854 ctgcaaagatgtggaaagagttgcagattaagatgga 27172818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 34626760 - 34626700
Alignment:
Q  79 tgcaaagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaa 139  Q
    |||||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||||    
T  34626760 tgcaaagatgtggaaagagttgtagattgagatggatcaactatctgagacctgatttgaa 34626700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 44674038 - 44674089
Alignment:
Q  83 aagatgtggaaagagttgtagattaagatggataaattatctaagacctgat 134  Q
    ||||||||| |||||||| ||||| |||||||||||||| ||||||||||||    
T  44674038 aagatgtggcaagagttgcagattgagatggataaattacctaagacctgat 44674089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 139
Target Start/End: Complemental strand, 45676145 - 45676080
Alignment:
Q  74 aggtctgcaaagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaa 139  Q
    |||| |||| || ||||| |||||||||||||| |||||||||||||||||||| |||||||||||    
T  45676145 aggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaa 45676080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 43560606 - 43560551
Alignment:
Q  81 caaagatgtggaaagagttgtagattaagatggataaattatctaagacctgattt 136  Q
    |||||||||||||||||||||||||| ||||||||||| ||| | || ||||||||    
T  43560606 caaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgattt 43560551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 24359871 - 24359829
Alignment:
Q  79 tgcaaagatgtggaaagagttgtagattaagatggataaatta 121  Q
    |||||||||||||||| |||||||| ||||||||||| |||||    
T  24359871 tgcaaagatgtggaaaaagttgtaggttaagatggatcaatta 24359829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 16127462 - 16127411
Alignment:
Q  83 aagatgtggaaagagttgtagattaagatggataaattatctaagacctgat 134  Q
    |||||||||||||||||||||||| |||||||| |||||| ||||| |||||    
T  16127462 aagatgtggaaagagttgtagattgagatggattaattatttaagaactgat 16127411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 51044466 - 51044526
Alignment:
Q  79 tgcaaagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaa 139  Q
    ||||||| ||||||||||| |||||||| ||||||||||| ||| | || |||||||||||    
T  51044466 tgcaaaggtgtggaaagagctgtagattgagatggataaactatttgaggcctgatttgaa 51044526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 16138972 - 16138921
Alignment:
Q  83 aagatgtggaaagagttgtagattaagatggataaattatctaagacctgat 134  Q
    |||||||||||||||||||||||| |||||||| || ||| ||| |||||||    
T  16138972 aagatgtggaaagagttgtagattgagatggattaactatttaaaacctgat 16138921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 37962858 - 37962924
Alignment:
Q  74 aggtctgcaaagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaa 140  Q
    |||| ||||||| ||||| |||||||| || |||||||||||||||||  | || ||||||||||||    
T  37962858 aggtttgcaaaggtgtgggaagagttgcaggttaagatggataaattacttgaggcctgatttgaaa 37962924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 134
Target Start/End: Original strand, 1281333 - 1281383
Alignment:
Q  84 agatgtggaaagagttgtagattaagatggataaattatctaagacctgat 134  Q
    |||||||||||||||||||| |||||||||| ||||||| |||| ||||||    
T  1281333 agatgtggaaagagttgtaggttaagatggacaaattatttaagtcctgat 1281383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 1319385 - 1319335
Alignment:
Q  84 agatgtggaaagagttgtagattaagatggataaattatctaagacctgat 134  Q
    ||||||||||||||||||||| | |||||||  ||||||||||| ||||||    
T  1319385 agatgtggaaagagttgtagacttagatggaataattatctaaggcctgat 1319335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 2590843 - 2590896
Alignment:
Q  81 caaagatgtggaaagagttgtagattaagatggataaattatctaagacctgat 134  Q
    ||||| ||||| ||||||||||| || ||||||||||||||| |||| ||||||    
T  2590843 caaaggtgtggtaagagttgtaggttgagatggataaattatttaaggcctgat 2590896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5060 times since January 2019
Visitors: 4845